| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 654882 | 52 (0.840) | 4 (0.070) | 3/256 | NT | 7.2% | intergenic (‑140/+105) | ctpL/PP_0563 | methyl‑accepting chemotaxis protein CtpL/two‑component system response regulator |
| ? | NC_002947 | = 654958 | 53 (0.890) | intergenic (‑216/+29) | ctpL/PP_0563 | methyl‑accepting chemotaxis protein CtpL/two‑component system response regulator | |||||
CAGGGGCTTGGTGTCAGAAAAAAAGTGGCACAGTGCCTCCATTGGTGTGGCCGGCACTGGCCTCTTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/654816‑654882‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcttcACAGGCTCGCCCGCTTCCCCAGGCATTTCACATACCTCAAGTCTGGAGGTAAACCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCAGTGCCGGCCACACCAATGGAGGCACTGTGCCACTTTTTTTCTGACACCAAGCCCCTGGCGT < NC_002947/654958‑654812 CAGGGGCTTGGTGTCAGAAAAAACGTGGCACAGTGCCTCCATTGGTGTGGCCGGCACTGGCCTCTTCACAGGCTCGCCCGCTTCCCCAGGCATTTCACATACCTCAAGTCTGGAGGTAAACCTGTGGGAGCGGGCAAGCCCGCGAAGAG < 5:302035/149‑1CAGGGGCTTGGTGTCAGAAAAAAAGTGGCACAGTGCCTCCATTGGTGTGGCCGGCACTGGCCTCTTCACAGGCTCGCCCGCTTCCCCAGGCATTTCACATACCTCAAGTCTGGAGGTAAACCTGTGGGAGCGGGCAAGCCCGCGAAGAG < 5:41925/149‑1 AGAAAAAAAGTGGCACAGTGCCTCCATTGGTGTGGCCGGCACTGGCCTCTTCACAGGCTCGCCCGCTTCCCCAGGCATTTCACATACCTCAAGTCTGGAGGTAAACCTGTGGGAGCGGGCAAGCCCGC < 4:319986/128‑1 AGAAAAAAAGTGGCACAGTGCCTCCATTGGTGTGGCCGGCACTGGCCTCTTCACAGGCTCGCCCGCTTCCCCAGGCATTTCACATACCTCAAGGCTGGAGGTAAACCTGTGGGAGCGGGCAAGCCCGC > 3:319986/1‑128 CACAGGCTCGCCCGCTTCCCCAGGCATTTCACATACCTCAAGTCTGGAGGTAAACCTGTGGGAGCGGGCAAGCCCGCGAAGATGCCAGTGCCGGCCACACCAATGGAGGCACTGTGCCACTTTTTTTCTGACACCAAGCCCCTGGC < 2:334820/146‑1 CACAGGCTCGCCCGCTTCCCCAGGCATTTCACATACCTCAAGTCTGGAGGTAAACCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCAGTGCCGGCCACACCAATGGAGGCACTGTGCCACTTTTTTTCTGACACCAAGCCCCTGGCGT < 8:310898/148‑1 CAGGGGCTTGGTGTCAGAAAAAAAGTGGCACAGTGCCTCCATTGGTGTGGCCGGCACTGGCCTCTTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/654816‑654882‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcttcACAGGCTCGCCCGCTTCCCCAGGCATTTCACATACCTCAAGTCTGGAGGTAAACCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCAGTGCCGGCCACACCAATGGAGGCACTGTGCCACTTTTTTTCTGACACCAAGCCCCTGGCGT < NC_002947/654958‑654812 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |