New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	792963 =	62 (1.000)	4 (0.070)	4/252	NT	6.6%	coding (86/1854 nt)	PP_0678	hypothetical protein
	?	NC_002947	792988 =	54 (0.920)					coding (61/1854 nt)	PP_0678	hypothetical protein

CAGCTGCTCCCGCCCCACCCGGGGCGGGTTTCGCCTTTTTCGGCATCGTCAAGAAGTAGTTGCCCGATATGCTCAAACGCCTCGCTGCCCTGGCGCTGTGTGCCTGCGCCCCTGTTCATGCCGCCCCCATGCTGGATCCAGGCCGTCTCCAGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/793116‑792963 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tccagcaTGGGGGCGGCATGAACAGGGGCGCAGGCACACAGCGCCAGGGCAGCGAGGCGTTTGAGCATATCGGGCAACTACTTCTTGACGATGCCGAAAAAGGCGAAACCCGCCCCGGGTGGGGCGGGAGCAGCTGTGCTTAGGCCTCGGTAGC  >  NC_002947/792988‑793134                                                                                                                                                                                                                                                                                                               CAGCTGCTCCCGCCCCACCCGGGGCGGGTTTCGCCTTTTTCGGCATCGTCAAGAAGTAGTTGCCCGATATGCTCAAACGCCTCGCTGCCCTGGCGCTGTGTGCCTGCGCCCCTGTTCATGCCGCCCCCATGCTGGATCCAGGCCGTCTC                                                                                                                                                          <  2:311092/149‑1          CCGCCCCACCCGGGGCGGGTTTCGCCTTTTTCGGCATCGTCAAGAAGTAGTTGCCCGATATGCTCAAACGCCTCGCTGCCCTGGCGCTGTGTGCCTGCGCCCCGGTTCATGCCGCCCCCATGCTGGATCCCGGCCGGCTCCAGCActtg                                                                                                                                                 >  5:64876/1‑145                       GGCGGGTTTCGCCTTTTTCGGCATCGTCAAGAAGTAGTTGCCCGATATGCTCAAACGCCTCGCTGCCCTGGCGCTGTGTGCCTGCGCCCCTGTTCATGCCGCCCCCATGCTGGAGACGGCCTGGATCCAGCATGGGGGCGGCATGAACA                                                                                                                                    <  3:351682/149‑1                                                                                                                              CCCATGCTGGATCCAGGCCGTCTCCAGCATGGGGGCGGCATGAACAGGGGCGCAGGCACACAGCGCCAGGGCAGCGAGGCGTTTGAGCATATCGGGCAACTACTTCTTGA                                                                    >  3:142898/1‑110                                                                                                                              CCCATGCTGGATCCAGGCCGTCTCCAGCATGGGGGCGGCATGAACAGGGGCGCAGGCACACAGCGCCAGGGCAGCGAGGCGTTTGAGCATATCGGGCAACTACTTCTTGA                                                                    <  4:142898/110‑1                                                                                                                                CATGCTGGATCCAGGCCGTCTCCAGCATGGGGGCGGCATGAACAGGGGCGCAGGCACACAGCGCCAGGGCAGCGAGGCGTTTGAGCATATCGGGCAACTACTTCTTGACGATGCCGAAAAAGGCGAAACCCGCCCCGGGTGGGGCGG                             >  4:77172/1‑147                                                                                                                                                     CCAGCATGGGGGCGGCATGAACAGGGGCGCAGGCACACAGCGCCAGGGCAGCGAGGCGTTTGAGCATATCGGGCAACTACTTCTTGACGATGCCGAAAAAGGCGAAACCCGCCCCGGGTGGGGCGGGAGCAGCTGTGCTTAGGCCTCG       <  4:238546/148‑1                                                                                                                                                       AGCATGGGGGCGGCATGAACAGGGGCGCAGGCACACAGCGCCAGGGCAGCGAGGCGTTTGAGCATATCGGGCAACTACTTCTTGACGATGCCGAAAAAGGCGAAACCCGCCCCGGGTGGGGCGGGAGCAGCTGTGCTTAGGCagcgg      >  3:350/1‑142                                                                                                                                                       AGCATGGGGGCGGCATGAACAGGGGCGCAGGCACACAGCGCCAGGGCAGCGAGGCGTTTGAGCATATCGGGCAACTACTTCTTGACGATGCCGAAAAAGGCGAAACCCGCCCCGGGTGGGGCGGGAGCAGCTGTGCTTAGGCCTCGG      >  2:232253/1‑147                                                                                                                                                       AGCATGGGGGCGGCATGAACAGGGGCGCAGGCACACAGCGCCAGGGCAGCGAGGCGTTTGAGCATATCGGGCAACTACTTCTTGACGATGCCGAAAAAGGCGAAACCCGCCCCGGGTGGGGCGGGAGCAGCTGTGCTTAGGCCTCGG      >  2:339837/1‑147                                                                                                                                                         CATGGGGGCGGCATGAACAGGGGCGCAGGCACACAGCGCCAGGGCAGCGAGGCGTTTGAGCATATCGGGCAACTACTTCTTGACGATGCCGAAAAAGGCGAAACCCGCCCCGGGTGGGGCGGGAGCAGCTGTGCTTAGGCCTCGGTAGC  <  7:188219/149‑1                                                                                                                                                         CATGGGGGCGGCATGAACAGGGGCGCAGGCACACAGCGCCAGGGCAGCGAGGCGTTTGAGCATATCGGGCAACTACTTCTTGACGATGCCGAAAAAGGCGAAACCCGCCCCGGGTGGGGCGGGAGCAGCTGTGCTTAGGCCTCGGTAGC  >  8:188219/1‑149                                                                                                                                                                                                                                                                                                               CAGCTGCTCCCGCCCCACCCGGGGCGGGTTTCGCCTTTTTCGGCATCGTCAAGAAGTAGTTGCCCGATATGCTCAAACGCCTCGCTGCCCTGGCGCTGTGTGCCTGCGCCCCTGTTCATGCCGCCCCCATGCTGGATCCAGGCCGTCTCCAGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/793116‑792963 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tccagcaTGGGGGCGGCATGAACAGGGGCGCAGGCACACAGCGCCAGGGCAGCGAGGCGTTTGAGCATATCGGGCAACTACTTCTTGACGATGCCGAAAAAGGCGAAACCCGCCCCGGGTGGGGCGGGAGCAGCTGTGCTTAGGCCTCGGTAGC  >  NC_002947/792988‑793134

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.