| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 888827 | 55 (0.890) | 4 (0.070) | 4/254 | NT | 6.9% | coding (257/693 nt) | PP_0769 | sensor histidine kinase |
| ? | NC_002947 | = 888842 | 56 (0.950) | coding (272/693 nt) | PP_0769 | sensor histidine kinase | |||||
GAGCGGTTGCCCGAGGAACTGCGCGGCGGTGCCGAACAGGGGATCATGGAGCATGAGTTTCGTCACCTCAACGGCATGCTGGTGCAGTTGCTGGGCTTGTACAAACTGGGTGTGAACCAGTTGCCGGTATGCCCGGACTACCATGAGCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/888679‑888827‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgagctTCGATGAAATCATC‑CAGCTCATGGTAGTCCGGGCATACCGGCAACTGGTTCACACCCAGTTTGTACAAGCCCAGCAACTGCACCAGCATGCCGTTGAGGTGACGAAACTCATGCTCCATGATCCCCTGTTCGGCACCGCCGCGCAG < NC_002947/888842‑888697 GAGCGGTTGCCCGAGGGACTGCGCGGCGGTGCCGAACAGGGGATCATGGAGCATGAGTTTCGTCACCTCAACGGCATGCTGGTGCAGTTGCTGGGCTTGTACAAACTGGGTGTGAACCAGTTGCCGGTATGACCGGACTACAATGAGCT > 6:307006/1‑149GAGCGGTTGCCCGAGGAACTGCGCGGCGGTGCCGAACAGGGGATCATGGAGCATGAGTTTCGTCACCTCAACGGCAAGCTGGTGCAGTTGCTGGGCTTGTACAAACTGGGTGTGAACCAGTTGCCGGTATGCCCGGACTACCATGAGCT < 6:361291/149‑1 tgaCGAACAGGGGATCATGGATCATGAGTTTCGTCACCTCAACGGCATGCTTGTGCAGTTGCTGGTCTTGTACAAACTGGGTGTGAACCAGTTGCCGGTATGCCCGGACTACCATGAGCTTCGATGAAATCATC‑CAGCTCATGGTAG < 7:305892/144‑1 GTCACCTCAACGGCATGCTGGTGCAGTTGCTGGGCTTGTACAAACTGGGTGTGAACCAGTTGCCGGTATGCCCGGACTACCATGAGCTTCGATGAAATCATC‑CAGCTCAT > 7:69165/1‑110 GTCACCTCAACGGCATGCTGGTGCAGTTGCTGGGCTTGTACAAACTGGGTGTGAACCAGTTGCCGGTATGCCCGGACTACCATGAGCTTCGATGAAATCATC‑CAGCTCAT < 8:69165/110‑1 CCCGGACTACCATGAGC‑TGGATGATTTCATCGAAGCTCATGGTAGTCCGGGCATACCGGCAACTGGTTCACACCCAGTTTGTACAAGCCCAGCAACTGCACCAGCATGCCGTTGAGGTGACGAAACTCATGCTCCATGATCCCCTGTTC > 2:183690/1‑149 TGAGCTTCGATGAAATCATC‑CAGCTCATGGTAGTCCGGGCATACCGGCAACTGGTTCACACCCAGTTTGTACAAGCCCAGCAACTGCACCAGCATGCCGTTGAGGTGACGAAACTCATGCTCCATGATCCCCTGTTCGGCACCGCCGCG > 6:311554/1‑149 AGCTTCGATGAAATCATC‑CAGCTCATGGTAGTCCGGGCATACCGGCAACTGGTTCACACCCAGTTTGTACAAGCCCAGCAACTGCACCAGCATGCCGTTGAGGTGACAAAACTCATGCTCCATGATCCCCTGTTCGGCACCGCCGCGCA < 5:87000/149‑1 AGCTTCGATGAAATCATC‑CAGCTCATGGTAGTCCGGGCATACCGGCAACTGGTTCACACCCAGTTTGTACAAGCCCAGCAACTGCACCAGCATGCCGGTGAGGTGACGAAACTCATGCTCCATTCTCCCCTGTTCGGCACCGCCGCGCA < 7:171724/149‑1 GCTTCGATGAAATCATC‑CAGCTCATGGTAGTCCGGGCATACCGGCAACTGGTTCACACCCAGTTTGTACAAGCCCAGCAACTGCACCAGCATGCCGTTGAGGTGACGAAACTCATGCTCCATGATCCCCTGTTCGGCACCGCCGCGCAG < 7:328498/149‑1 GAGCGGTTGCCCGAGGAACTGCGCGGCGGTGCCGAACAGGGGATCATGGAGCATGAGTTTCGTCACCTCAACGGCATGCTGGTGCAGTTGCTGGGCTTGTACAAACTGGGTGTGAACCAGTTGCCGGTATGCCCGGACTACCATGAGCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/888679‑888827‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgagctTCGATGAAATCATC‑CAGCTCATGGTAGTCCGGGCATACCGGCAACTGGTTCACACCCAGTTTGTACAAGCCCAGCAACTGCACCAGCATGCCGTTGAGGTGACGAAACTCATGCTCCATGATCCCCTGTTCGGCACCGCCGCGCAG < NC_002947/888842‑888697 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |