New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 888827	55 (0.890)	4 (0.070)	4/254	NT	6.9%	coding (257/693 nt)	PP_0769	sensor histidine kinase
	?	NC_002947	= 888842	56 (0.950)					coding (272/693 nt)	PP_0769	sensor histidine kinase

CTGCGCGGCGGTGCCGAACAGGGGATCATGGAGCATGAGTTTCGTCACCTCAACGGCATGCTGGTGCAGTTGCTGGGCTTGTACAAACTGGGTGTGAACCAGTTGCCGGTATGCCCGGACTACCATGAGCTG‑GATGATTTCATCGAAGCTCAGCTGGCGGCGCACGAGGAAGTACTCAAGCACAACGACATTCTCGCCACTTGGCGCATCGACACCGACAACCCGCTGGGTTTCTTCGACCGCGAACTGGTGGCCTCGGTGATCGCCAACGTCATCACCAACGCCACCCGCT  >  NC_002947/888697‑888988                                                                                                                                                   |                                                                                                                                                   cTGCGCGGCGGTGCCGAACAGGGGATCATGGAGCATGAGTTTCGTCACCTCAACGGCATGCTGGTGCAGTTGCTGGGCTTGTACAAACTGGGTGTGAACCAGTTGCCGGTATGCCCGGACTACCATGAGCTG‑GATGATTTCATCGAagc                                                                                                                                                 <  7:328498‑M2/149‑4 (MQ=255)  tGCGCGGCGGTGCCGAACAGGGGATCATGGAGCATGAGTTTTGTCACCTCAACGGCATGCTGGTGCAGTTGCTGGGCTTGTACAAACTGGGTGTGAACCAGTTGCCGGTATGCCCGGACTACCATGAGCTG‑GATGATTTCATCGAagct                                                                                                                                                <  5:87000‑M2/149‑5 (MQ=255)  tGCGCGGCGGTGCCGAACAGGGGAGAATGGAGCATGAGTTTCGTCACCTCACCGGCATGCTGGTGCAGTTGCTGGGCTTGTACAAACTGGGTGTGAACCAGTTGCCGGTATGCCCGGACTACCATGAGCTG‑GATGATTTCATCGAagct                                                                                                                                                <  7:171724‑M2/149‑5 (MQ=255)    cgcgGCGGTGCCGAACAGGGGATCATGGAGCATGAGTTTCGTCACCTCAACGGCATGCTGGTGCAGTTGCTGGGCTTGTACAAACTGGGTGTGAACCAGTTGCCGGTATGCCCGGACTACCATGAGCTG‑GATGATTTCATCGAagctca                                                                                                                                              >  6:311554‑M2/1‑143 (MQ=255)      cggcggTGCCGAACAGGGGATCATGGAGCATGAGTTTCGTCACCTCAACGGCATGCTGGTGCAGTTGCTGGGCTTGTACAAACTGGGTGTGAACCAGTTGCCGGTATGCCCGGACTACCATGAGCTG‑GATGATTTCATCGAAGCTCAGc                                                                                                                                            <  1:15899/149‑1 (MQ=255)              ccGAACAGGGGATCATGGAGCATGAGTTTCGTCACCTCAACGGCATGCTGGTGCAGTTGCTGGGCTTGTACAAACTGGGTGTGAACCAGTTGCCGGTATGCCCGGACTACCATGAGCTG‑GATGATTTCATCGAAGCTCAGCTggcggtc                                                                                                                                    <  6:60654/149‑3 (MQ=255)                gAACAGGGGATCATGGAGCATGAGTTTCGTCACCTCAACGGCATGCTGGTGCAGTTGCTGGGCTTGTACAAACTGGGTGTGAACCAGTTGCCGGTATGCCCGGACTACCATGAGCTTCGATGAAATCATCCAgctcatggtagtccggg                                                                                                                                   >  2:183690‑M2/1‑132 (MQ=255)                       ggATCATGGAGCATGAGTTTCGTCACCTCAACGGCATGCTGGTGCAGTTGCTGGGCTTGTACAAACTGGGTGTGAACCAGTTGCCGGTATGCCCGGACTACCATGAGCTG‑GATGATTTCATCGAAGCTCAGCTGGCGGCGCACGAGGaa                                                                                                                           <  5:149942/149‑1 (MQ=255)                       ggATCATGGAGCATGAGTTTCGTCACCTCAACGGCATGCTGGTGCAGTTGCTGGGCTTGTACAAACTGGGTGTGAACCAGTTGCCGGTATGCCCGGACTACCATGAGCTG‑GATGATTTCATCGAAGCTCAGCTGGCGGCGCACGAGGaa                                                                                                                           <  3:173844/149‑1 (MQ=255)                            aTGGAGCATGAGTTTCGTCACCTCAACGGCATGCTGGTGCAGTTGCTGGGCTTGTACAAACTGGGTGTGAACCAGTTGCCGGTATGCCCGGACTACCATGAGCTG‑GATGATTTCATCGAAGCTCAGCTGGCGGCGCACGAGGaa                                                                                                                           >  8:134122/1‑144 (MQ=255)                            aTGGAGCATGAGTTTCGTCACCTCAACGGCATGCTGGTGCAGTTGCTGGGCTTGTACAAACTGGGTGTGAACCAGTTGCCGGTATGCCCGGACTACCATGAGCTG‑GATGATTTCATCGAAGCTCAGCTGGCGGCGCACGAGGaa                                                                                                                           <  7:134122/144‑1 (MQ=255)                             tGGAGCATGAGTTTCGTCACCTCAACGGCATGCTGGTGCAGTTGCTGGGCTTGTACAAACTGGGTGTGAACCAGTTGCCGGTATGCCCGGACTACCATGAGCTG‑GATGATTTCATCGAAGCTCAGCTGGCGGCGCACGAGGAAGTACTc                                                                                                                     <  2:372476/149‑1 (MQ=255)                               gAGCATGAGTTTCGTCACCTCAACGGCATGCTGGTGCAGTTGCTGGGCTTGTACAAACTGGGTGTGAACCAGTTGCCGGTATGCCCGGACTACCATGAGCTG‑GATGATTTCATCGAAGCTCAGCTGGCGGCGCACGAGGAAGTACTCaa                                                                                                                   <  5:185616/149‑1 (MQ=255)                                aGCATGAGTTTCGTCACCTCAACGGCATGCTGGTGCAGTTGCTGGGCTTGTACAAACTGGGTGTGAACCAGTTGCCGGTATGCCCGGACTACCATGAGCTG‑GATGATTTCATCGAAGCTCAGCTGGCGGCGCACGAGGAAGTACTCAAg                                                                                                                  >  5:347553/1‑149 (MQ=255)                                aGCATGAGTTTCGTCACCTCAACGGCATGCTGGTGCAGTTGCTGGGCTTGTACAAACTGGGTGTGAACCAGTTGCCGGTATGCCCGGACTACCATGAGCTG‑GATGATTTCATCGAAGCTCAGCTGGCGGCGCACGAGGAAGTACTCAAg                                                                                                                  <  2:19/149‑1 (MQ=255)                                 gCATGAGTTTCGTCACCTCATCGGCATGCTGGTGCAGTTGCTGGGCTTGTACAAACTGCGTGTGAACCAGTTGCCGGTATGCCCGGACTACCATGAGCTG‑GATGATTTCATCGAAGCTCAGCTGGCGGCGCACGAGGAAGTACTCAAGc                                                                                                                 <  8:237828/149‑1 (MQ=255)                                    tGAGTTTCGTCACCTCAACGGCATGCTGGTGCAGTTGCTGGGCTTGTACAAACTGGGTGTGAACCAGTTGCCGGTATGCCCGGACTACCATGAGCTG‑GATGATTTCATTGAAGCTCAGCTGGCGGCGCACGAGGAAGTACTCAAGcac                                                                                                               >  4:95923/1‑148 (MQ=255)                                    tGAGTTTCGTCACCTCAACGGCATGCTGGTGCAGTTGCTGGGCTTGTACAAACTGGGTGTGAACCAGTTGCCGGTATGCCCGGACTACCATGAGCTG‑GATGATTTCATCGAAGCTCAGCTGGCGGCGCACGAGGAAGTACTCAAGcac                                                                                                               >  2:311514/1‑148 (MQ=255)                                        tttCGTCACCTCAACGGCATGCTGGTGCAGTTGCTGGGCTTGTACAAACTGGGTGTGAACCAGTTGCCGGTATGCCCGGACTACCATGAGCTG‑GATGATTTCATCGAAGCTCAGCTGGCGGCGCACGAGGAAGTACTCAAGCACAACg                                                                                                           >  3:235772/1‑148 (MQ=255)                                                 cTCAACGGCATGCTGGTGCAGTTGCTGGGCTTGTACAAACTGGGTGTGAACCAGTTGCCGGTATGCCCGGACTACCATGAGCTG‑GATGATTTCATTGAAGCTCAGCTGGCGGCGCACGAGGAAGTACTCAAGCACAACGACATTCTCGc                                                                                                 <  3:95923/149‑1 (MQ=255)                                                 cTCAACGGCATGCTGGTGCAGTTGCTGGGCTTGTACAAACTGGGTGTGAACCAGTTGCCGGTATGCCCGGACTACCATGAGCTG‑GATGATTTCATCGAAGCTCAGCTGGCGGCGCACGAGGAAGTACTCAAGCACAACGACATTCTCGc                                                                                                 >  1:229078/1‑149 (MQ=255)                                                 cTCAACGGCATGCTGGTGCAGTTGCTGGGCTTGTACAAACTGGGTGTGAACCAGTTGCCGGTATGCCCGGACTACCATGAGCTG‑GATGATTTCATCGAAGCTCAGCTGGCGGCGCACGAGGAAGTACTCAAGCACAACGACATTCTCGc                                                                                                 <  3:48660/149‑1 (MQ=255)                                                 cTCAACGGCATGCTGGTGCAGTTGCTGGGCTTGAACAAACTGGGTGTGAACCAGTTGCCGGTATGCCCGGACTACCATGAGCTG‑GATGATTTCATCGAAGCTCAGCTGGCGGCGCACGAGGAAGTACTCAAGCACAACGACATTCTCGc                                                                                                 >  1:243515/1‑149 (MQ=255)                                                  tCAACGGCATGCTGGTGCAGTTGCTGGGCTTGTACAAACTGGGTGTGAACCAGTTGCCGGTATGCCCGGACTACCATGAGCTG‑GATGATTTCATCGAAGCTCAGCTGGCGGCGCACGAGGAAGTACTCAAGCACAACGACATTCTCGc                                                                                                 >  5:130680/1‑148 (MQ=255)                                                  tCAACGGCATGCTGGTGCAGTTGCTGGGCTTGTACAAACTGGGTGTGAACCAGTTGCCGGTATGCCCGGACTACCATGAGCTG‑GATGATTTCATCGAAGCACAGCTGGCGGCGCACGAGGAAGTACTCAAGCACAACGACATTCTCGc                                                                                                 >  5:372264/1‑148 (MQ=255)                                                   cAACGGCATGCTGGTGCAGTTGCTGGGCTTGTACAAACTGGGTGTGAACCAGTTGCCGGTATGCCCGGACTACCATGAGCTG‑GATGATTTCATCGAAGCTCAGCTGGCGGCGCACGAGGAAGTACTCAAGCACAACGACATTCTCGCCa                                                                                               >  6:107449/1‑149 (MQ=255)                                                    aaCGGCATGCTGGTGCAGTTCCTGGGCTTGTACAAACTCGCTGTGAACCAGTTGCCGCTATGCCCGGACTACCATGAGCTC‑GATCATTTCATCGAAGCTCACCTGGCGGCGCACCAGGAAGTACTCAAGCACAACGACATTCTCGCCAc                                                                                              >  3:203150/1‑149 (MQ=255)                                                     aCGGCATGCTGGTGCAGTTGCTGGGCTTGTACAAACTGGGTGTGAACCAGTTGCCGGTATGCCCGGACTACCATGAGCTG‑GATGATTTCATCGAAGCTCAGCTGGCGGCGCACGAGGAAGTACTCAAGCACAACGACATTCTCGCCACt                                                                                             <  8:171724/149‑1 (MQ=255)                                                         cATGCTGGTGCAGTTGCTGGGCTTGTACAAACTGGGTGTGAACCAGTTGCCGGTATGCCCGGACTACCATGAGCTG‑GATGATTTCATCGAAGCTCAGCTGGCGGCGCACGAGGAAGTACTCAAGCACAACGACATtctc                                                                                                   <  1:63601/139‑1 (MQ=255)                                                         cATGCTGGTGCAGTTGCTGGGCTTGTACAAACTGGGTGTGAACCAGTTGCCGGTATGCCCGGACTACCATGAGCTG‑GATGATTTCATCGAAGCTCAGCTGGCGGCGCACGAGGAAGTACTCAAGCACAACGACATtctc                                                                                                   >  2:63601/1‑139 (MQ=255)                                                                    aGTTGCTGGGCTTGTACAAACTGGGTGTGAACCAGTTGCCGGTATGCCCGGACTACCATGAGCTG‑GATGATTTCATCGAAGCTCAGCTGGCGGCGCACGAGGAAGTACTCAAGCACAACGACATTCTCGCCACTTGGCGCATCGACAcc                                                                              <  7:363305/149‑1 (MQ=255)                                                                            ggCTTGTACAAACTGGGTGTGAACCAGTTGCCGGTATGCCCGGACTACCATGAGCTG‑GATGATTTCATCGAAGCTCAGCTGGCGGCGCACGAGGAAGTACTCAAGCACAACGACATTCTCGCCACTTGGCGCATCGACACCGACAAc                                                                        <  8:328498/147‑1 (MQ=255)                                                                             gCTTGTACAAACTGGGTGTGAACCAGTTGCCGGTATGCCCGGACTACCATGAGCTG‑GATGATTTCATCGAAGCTCAGCTGGCGGCGCACGAGGAAGTACTCAAGCACAACGCCATTCTCGCCACTTGGCGCATCGACACCGACAACCCg                                                                     >  8:107869/1‑149 (MQ=255)                                                                             gCTTGTACAAACTGGGTGTGAACCAGTTGCCGGTATGCCCGGACTACCATGAGCTG‑GATGATTTCATCGAAGCTCAGCTGGCGGCGCACGAGGAAGTACTCAAGCACAACGACATTCTCGCCACTTGGCGCATCGACACCGACAACCCg                                                                     >  2:343239/1‑149 (MQ=255)                                                                                 gTACAAACTGGGTGTGAACCAGTTGCCGGTATGCCCGGACTACCATGAGCTG‑GATGATTTCATCGAAGCTCAGCTGGCGGCGCACGAGGAAGTACTCAAGCACAACGACATTCTCGCCACTTGGCGCATCGACACCGACAACCCGCTg                                                                  <  5:117735/148‑1 (MQ=255)                                                                                 gTACAAACTGGGTGTGAACCAGTTGCCGGAATGCCCGGACTACCATGAGCTG‑GATGATTTCATCGAAGCTCAGCTGGCGGCGCACGAGGAAGTACTCAAGCACAACGACATTCTCGCCACTTGGCGCATCGACACCGACAACCCGCTg                                                                  <  7:23100/148‑1 (MQ=255)                                                                                  tACAAACTGGGTGTGAACCAGTTGCCGGTATGCCCGGACTACCATGAGCTG‑GATGATTTCATCGAAGCTCAGCTGGCGGCGCACGAGGAAGTACTCAAGCACAACGACATTCTCGCCACTTGGCGCATCGACACCGACAACCCGCTggg                                                                >  6:186234/1‑149 (MQ=255)                                                                                    cAAACTGGGTGTGAACCAGTTGCCGGTATGCCCGGACTACCATGAGCTG‑GATGATTTCATCGAAGCTCAGCTGGAGGCGCACGAGGAAGTACTCAAGCACAACGACATTCTCGCCACTTGGCGCATCGACACCGACAACCCGCTGGGt                                                               <  3:156899/148‑1 (MQ=255)                                                                                      aaCTGGGTGTGAACCAGTTGCCGGTATGCCCGGACTACCATGAGCTG‑GATGATTTCATCGAAGCTCAGCTGGCGGCGCACGAGGAAGTACTCAAGCACAACGACATTCTCGCCACTTGGCGCATCGACACCGACAACCCGCTGGGTttc                                                            >  2:100638/1‑149 (MQ=255)                                                                                                 aaCCAGTTGCCGGTATGCCCGGACTACCATGAGCTG‑GATGATTTCATCGAAGCTCAGCTGGCGGCGCACGAGGAAGTACTCAAGCACAACGACATTCTCGCCACTTGGCGCATCGACACCGACAACCCGCTGGGTTTCTTCGACcgcg                                                  >  7:160000/1‑148 (MQ=255)                                                                                                  aCCAGTTGCCGGTATGCCCGGACTACCATGAGCTG‑GATGATTTCATCGAAGCTCAGCTGGCGGCGCACGAGGAAGTACTCAAGCACAACGACATTCTCGCCACTTGGCGCATCGACACCGACAACCCGATGGGTTTAGTCGACcgcgca                                                >  6:270244/1‑147 (MQ=255)                                                                                                   ccAGTTGCCGGTATGCCCGGACTACCATGAGCTG‑GATGATTTCATCGAAGCTCAGCTGGCGGCGCACGAGGAAGTACTCAAGCACAACGACATTCTCGCCACTTGGCGCATCGACACCGACaa                                                                         >  2:56360/1‑123 (MQ=255)                                                                                                      gTTGCCGGTATGCCCGGACTACCATGAGCTG‑GATGATTTCATCGAAGCTCAGCTGGCGGCGCACGAGGAAGTACTCAAGCACAACGACATTCTCGCCACTTGGCGCATCGACACCGACAACCCGCTGGGTTTCTTCGACCGCGAACtgg                                            >  6:179835/1‑149 (MQ=255)                                                                                                         gCCGGTATGCCCGGACTACCATGAGCTG‑GATGATTTCATCGAAGCTCAGCTGGCGGCGCACGAGGAAGTACTCAAGCACAACGACATTCTCGCCACTTGGCGCATCGACACCGACAACCCGCTGGGTTTCTTCGACCGCGAACtggtg                                          <  5:107449/148‑1 (MQ=255)                                                                                                         gCCGGTATGCCCGGACTACCATGAGCTG‑GATGATTTCATCGAAGCTCAGCTGGCGGCGCACGAGGAAGTACTCAAGCACAACGACATTCTCGCCACTTGGCGCATCGACACCGACAACCCGCTGGGTTTCTTCGACCGCGAACtggtg                                          <  8:160000/148‑1 (MQ=255)                                                                                                          ccGGTATGCCCGGACTACCATGAGCTG‑GATGATTTCATCGAAGCTCAGCTGGCGGCGCACGAGGAAGTACTCAAGCACAACGACATTCTCGCCACTTGGCGCATCGACACCGACAACCCGCTGGGTTTCTTCGACCGCGAACTGGTGGc                                        >  3:370627/1‑149 (MQ=255)                                                                                                             gTATGCCCGGACTACCATGAGCTG‑GATGATTTCATCGAAGCTCAGCTGGCGGCGCACGAGGAAGTACTCAAGCACAACGACATTCTCGCCACTTGGCGCATCGACACCGACAACCCGCTGGGTTTCTTCGACCGCGAACTGGTGGCCTc                                     >  2:19330/1‑149 (MQ=255)                                                                                                                tGCCCGGACTACCATGAGCTG‑GATGATTTCATCGAAGCTCAGCTGGCGGCGCACGAGGAAGTACTCAAGCACAACGACATTCTCGCCACTTGGCGCATCGACACCGACAACCCGCTGGGTTTCTTCGACCGCGAACTGGTGGCCTCgg                                   <  1:343239/148‑1 (MQ=255)                                                                                                                  cccGGACTACCATGAGCTG‑GATGATTTCATCGAAGCTCAGCTGGCGGCGCACGAGGAAGTACTCAAGCACAACGACATTCTCGTCACTTGGCGCATCGACACCGACAACCCGCTGGGTTTCTTCGACCGCGAACTGGTGGCCTCGGTGa                                <  1:311514/149‑1 (MQ=255)                                                                                                                  cccGGACTACCATGAGCTG‑GATGATTTCATCGAAGCTCAGCTGGCGGCGCACGAGGAAGTACTCAAGCACAACGACATTCTCGACACTTGGCGCATCGACACCGACAACCCGCTGGGTTTCTTCGACCGCGAACTGGTGGCCTCGGTg                                 >  7:248824/1‑148 (MQ=255)                                                                                                                      gACTACCATGAGCTG‑GATGATTTCATCGAAGCTCAGCTGGCGGCGCACGAGGAAGTACTCAAGCACAACGACATTCTCGCCACTTGGCGCATCGACACCGACAACCCGCTGGGTTTCTTCGACCGCGAACTGGTGGCCTCGGTGATCGc                            >  6:210491/1‑149 (MQ=255)                                                                                                                        cTACCATGAGCTG‑GATGATTTCATCGAagctcatggtagtccgggcataccggcaactggttcacacccagtttgtacaagaccagcaactgcacaagcatgccgttgaggtgacgaaactcatgatccatgatcccctgttcgtca                            <  7:305892‑M2/147‑121 (MQ=255)                                                                                                                             aTGAGCTG‑GATGATTTCATCGAagctcatggtagtccgggcataccggcaactggttcacacccagtttgtacaagcccagcaactgcaccagcatgccgttgaggtgac                                                            >  7:69165‑M2/1‑22 (MQ=255)                                                                                                                             aTGAGCTG‑GATGATTTCATCGAagctcatggtagtccgggcataccggcaactggttcacacccagtttgtacaagcccagcaactgcaccagcatgccgttgaggtgac                                                            <  8:69165‑M2/110‑89 (MQ=255)                                                                                                                             aTGAGCTG‑GATGATTTCATCGAAGCTCAGCTGGCGGCGCACGAGGAAGTACTCAAGCACAAAGACATTCTCGCCACTTGGCGCATCGACACCGACAACCCGCTGGGTTTCTTCGACCGCGAACTGGTGGCCTCGGTGATCGCCAACGt                      >  1:133414/1‑148 (MQ=255)                                                                                                                              tGAGCTG‑GATGATTTCATCGAAGCTCAGCTGGCGGCGCACGAGGAAGTACTCAAGCACAACGACATTCTCGCCACTTGGCGCATCGACACCGACAACCCGCTGGGTTTCTTCGACCGCGAACTGGTGGCCTCGGTGATCGCCAACGtca                    >  5:297238/1‑149 (MQ=255)                                                                                                                              tGAGCTG‑GATGATTTCATCGAAGCTCAGCTGGCGGCGCACGAGGAAGTACTCAAGCACAACGACATTCTCGCCACTTGGCGCATCGACACCGACAACCCGCTGGGTTTCTTCGACCGCGAACTGGTGGCCTCGGTGATCGCCAACGtca                    >  8:207962/1‑149 (MQ=255)                                                                                                                              tGAGCTG‑GATGATTTCATCGAAGCTCAGCTGGCGGCGCACGAGGAAGTACTCAAGCACAACGACATTCTCGCCACTTGGCGCATCGACACCGACAACCCGCTGGGTTTCTTCGACCGCGAACTGGTGGCCTCGGTGATCGCCAACGtca                    >  8:277874/1‑149 (MQ=255)                                                                                                                                aGCTG‑GATGATTTCATCGAAGCTCAGCTGGCGGCGCACGAGGAAGTACTCAAGCACAACGACATTCTCGCCACTTGGCGCATCGACACCGACAACCCGCTGGGTTTCTTCGACCGCGAACTGGTGGCCTCGGTGATCGCCAACGtcat                   <  5:179835/148‑1 (MQ=255)                                                                                                                                 gCTG‑GATGATTTCATCGAAGCTCAGCTGGCGGCGCACGAGGAAGTACTCAAGCACAACGACATTCTCGCCACTTGGCGCATCGa                                                                                  >  6:343554/1‑84 (MQ=255)                                                                                                                                 gCTG‑GATGATTTCATCGAAGCTCAGCTGGCGGCGCACGAGGAAGTACTCAAGCACAACGACATTCTCGCCACTTGGCGCATCGACACCGACAACCCGCTGGGTTTCTTCGACCGCGAACTGGTGGCCTCGGTGATCGCCAACGtcatca                 >  3:28440/1‑149 (MQ=255)                                                                                                                                  cTG‑GATGATTTCATCGAAGCTCAGCTGGCGGCGCACGAGGAAGTACTCAAGCACAACGACATTCTCGCCACTTGGCGCATCGACACCGACAACCCGCTGGGTTTCTTCGACCGCGAACTGGTGGCCTCGGTGATCGCCAACGTCATCAc                <  4:178869/149‑1 (MQ=255)                                                                                                                                          atTTCATCGAAGCGCAGCTGGCGGCGCACGAGGAAGTACTCAAGCACAACGACATTCTCGCCACTTGGCGCATCGACACCGACAACCCGCTGGGTTTCTTCGACCGCGAACTGGTGGCCTCGGTGATCGCCAACGTCATCACCAACGc          <  6:87000/148‑1 (MQ=255)                                                                                                                                           tttCATCGAAGCTCAGCTGGCGGCGCACGAGGAAGTACTCAAGCACAACGACATTCTCGCCACTTGGCGCATCGACACCGACAACCCGCTGGGTTTCTTCGACCGCGAACTGGTGGCCTCGGTGATCGCCAACGTCATCACCAACGCCa        <  2:243515/149‑1 (MQ=255)                                                                                                                                            ttCATCGAAGCTCAGCTGGCGGCGCACGAGGAAGTACTCAAGCACAACGACATTCTCGCCACTTGGCGCATCGACACCGACAACCCGCTGGGTTTCTTCGACCGCGAACTGGTGGCCTCGGTGATCGCCAACGTCATCACCAACGCCAc       >  6:369575/1‑149 (MQ=255)                                                                                                                                               aTCGAAGCTCAGCTGGCGGCGCACGAGGAAGTACTCAATCACAACGACATTCTCGCCACTTGGCGCATCGACACCGACAACCCGCTGGGTTTCTTCGACCGCGAACTGGTGGCCTCGGTGATCGCCAACGTCATCACCAACGCCACCCg    >  2:252086/1‑149 (MQ=255)                                                                                                                                               aTCGAAGCTCAGCTGGCGGCGCACGAGGAAGTACTCAAGCACAACGACATTCTCGCCACTTGGCGCATCGACACCGACAACCCGCTGGGTTTCTTCGACCGCGAACTGGTGGCCTCGGTGATCGCCAACGTCATCACCAACGCCACCCg    <  7:207962/149‑1 (MQ=255)                                                                                                                                                tCGAAGCTCAGCTGGCGGCGCACGAGGAAGTACTCAAGCACAACGACATTCTCGCCACTTGGCGCATCGACACCGACAACCCGCTGGGTTTCTTCGACCGCGAACTGGTGGCCTCGGTGATCGCCAACGtc                     >  7:342539/1‑131 (MQ=255)                                                                                                                                                tCGAAGCTCAGCTGGCGGCGCACGAGGAAGTACTCAAGCACAACGACATTCTCGCCACTTGGCGCATCGACACCGACAACCCGCTGGGTTTCTTCGACCGCGAACTGGTGGCCTCGGTGATCGCCAACGtc                     <  8:342539/131‑1 (MQ=255)                                                                                                                                                  gAAGCTCAGCTGGCGGCGCACGAGGAAGTACTCAAGCACAACGACATTCTCGCCACTTGGCGCATCGACACCGACAACCCGCTGGGTTTCTTCGACCGCGAACTGGTGGCCTCGGTGATCGCCAACGTCATCACCAACGCCACCCGCt  <  2:229078/148‑1 (MQ=255)                                                                                                                                                   |                                                                                                                                                   CTGCGCGGCGGTGCCGAACAGGGGATCATGGAGCATGAGTTTCGTCACCTCAACGGCATGCTGGTGCAGTTGCTGGGCTTGTACAAACTGGGTGTGAACCAGTTGCCGGTATGCCCGGACTACCATGAGCTG‑GATGATTTCATCGAAGCTCAGCTGGCGGCGCACGAGGAAGTACTCAAGCACAACGACATTCTCGCCACTTGGCGCATCGACACCGACAACCCGCTGGGTTTCTTCGACCGCGAACTGGTGGCCTCGGTGATCGCCAACGTCATCACCAACGCCACCCGCT  >  NC_002947/888697‑888988

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.