New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1210993 =	76 (1.230)	4 (0.070)	4/258	NT	5.0%	coding (1474/1620 nt)	PP_1060	glutamate synthase large subunit
	?	NC_002947	1211074 =	77 (1.280)					coding (1393/1620 nt)	PP_1060	glutamate synthase large subunit

CAGCGCGCGCTGGTGGTGCCCGACAAAGCCCAGCGGGTGCTGAACTTCCATCACAACACGTTGCGTGCCTTGGCAGAAATGCTGGCGGCGGCAGGCCTGGAGCATCCGGCACAACTGGAGGCCAAGCACCTGGTGCGGCGCATTTCGGCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/1211143‑1210993 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccaAGGCACGCAACGTGTTGTGATGGAAGTTCAGCACCCGCTGGGCTTTGTCGGGCACCACCAGCGCGCGCTGGCGCAGCGGATCTTGCGTGGCCACGCCGGTCGGGCATTTGTTGGTGTGGCAGCTTTGCGACTGGATGCAGCCGATGGC  >  NC_002947/1211074‑1211221                                                                                                                                                                                                                                                                                                             CAGCGCGCGCTGGTGGTGCCCGACAAAGCCCAGCGGGTGCTGAACTTCCATCACAACACGTTGCGTGCCTTGGCAGAAATGCTGGCGGCGGCAGGCCTGGAGCATCCGGCACAACTGGAGGCCAAGCACCTGGTGCGGCGCATTTCGGC                                                                                                                                                        >  7:126218/1‑149                                                                   GCCTTGGCAGAAATGCTGGCGGCGGCAGGCCTGGAGCATCCGGCACAACTGGAGGCCAAGCACCTGGTGCGGCGCATTTCGGCCAAGGCACGCAACGTGTTGTGATGGAAGTTCAGCACCCGCTGGGCTTTGTCGGGCACCACCAGCGC                                                                                      >  8:198800/1‑149                                                                        GGCAGAAATGCTGGCGGCGGCAGGCCTGGAGCATCCGGCACAACTGGAGGCCAAGCACCTGGTGCGGCGCATTTCGGCCAAGGCACGCAACGTGTTGTGATGGAAGTTCAGCACCCGCTGGGCTTTGTCGGGCACCACCAGCGCGCGCT                                                                                 >  6:94327/1‑149                                                                         GCAGAAATGCTGGCGGCGGCAGGCCTGGAGCATCCGGCACAACTGGAGGCCAAGCACCTGGTGCGGCGCATTTCGGCCAAGGCACGCAACGTGTTGTGATGGAAGTTCAGCACCCGCTGGGCTTTGTCGGGCACCACCAGCGCGCGCTG                                                                                >  6:316136/1‑149                                                                                                    GAGCATCCGGCACAACTGGAGGCCAAGCACCTGGTGCGGCGCATTTCGGCCAAGGCACGCAACGTGTTGTGATGGAAGTTCAGCACCCGCTGGGCTTTGTCGGGCACCACCAGCGCGCGCTGGCGCAGCGGATCTTGCGTGGCCACGC                                                      <  5:316136/148‑1                                                                                                                                                    GCCAAGGCACGCAACGTGTTGTGATGGAAGTTCAGCACCCGCTGGGCTTTGTCGGGCACCACCAGCGCGCGCTGGCGCAGCGGATCTTGCGTGGCCACGCCGGTCGGGCATTTGTTGGTGTGGCAGCTTTGCGACTG                 >  3:259511/1‑137                                                                                                                                                    GCCAAGGCACGCAACGTGTTGTGATGGAAGTTCAGCACCCGCTGGGCTTTGTCGGGCACCACCAGCGCGCGCTGGCGCAGCGGATCTTGCGTGGCCACGCCGGTCGGGCATTTGTTGGTGTGGCAGCTTTGCGACTG                 <  4:259511/137‑1                                                                                                                                                     CCAAGGCACGCAACGTGTTGTGATGGAAGTTCAGCACCCGCTGGGCTTTGTCGGGCACCACCAGCGCGCGCTGGCGCAGCGGATCTTGCGTGGCCACGCCGGTCGGGCATTTGTTGGTGTGGCAGCTTTGCGACTGGATGCAGCCGAT     <  1:219461/148‑1                                                                                                                                                     CCAAGGCACGCAACGTGTTGTGATGGAAGTTCAGCACCCGCTGGGCTTTGTCGGGCACCACCAGCGCGCGCTGGCGCAGCGGATCTTGCGTGGCCACGCCGGTCGGGCATTTGTTGGTGTGGCAGCTTTGCGACTGGATGCAGCCGA      <  8:284790/147‑1                                                                                                                                                       AAGGCACGCAACGTGTTGTGATGGAAGTTCAGCACCCGCTGGGCTTTGTCGGGCACCACCAGCGCGCGCTGGCGCAGCGGATCTTGCGTGGCCACGCCGGTCGGGCATTTGTTGGTGTGGCAGCTTTGCGACTGGATGCAGCCGATGGC  >  5:2935/1‑149                                                                                                                                                                                                                                                                                                             CAGCGCGCGCTGGTGGTGCCCGACAAAGCCCAGCGGGTGCTGAACTTCCATCACAACACGTTGCGTGCCTTGGCAGAAATGCTGGCGGCGGCAGGCCTGGAGCATCCGGCACAACTGGAGGCCAAGCACCTGGTGCGGCGCATTTCGGCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/1211143‑1210993 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccaAGGCACGCAACGTGTTGTGATGGAAGTTCAGCACCCGCTGGGCTTTGTCGGGCACCACCAGCGCGCGCTGGCGCAGCGGATCTTGCGTGGCCACGCCGGTCGGGCATTTGTTGGTGTGGCAGCTTTGCGACTGGATGCAGCCGATGGC  >  NC_002947/1211074‑1211221

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.