| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 1393928 | 62 (1.000) | 3 (0.050) | 3/254 | NT | 5.6% | coding (279/618 nt) | ruvA | Holliday junction ATP‑dependent DNA helicase RuvA |
| ? | NC_002947 | = 1393971 | 42 (0.710) | coding (322/618 nt) | ruvA | Holliday junction ATP‑dependent DNA helicase RuvA | |||||
AAACCGTCACGGTGCATACCCACCTGGTCGTGCGCGAAGATGCCCACTTGCTCTACGGCTTTGCCGAAAAGCGCGAGCGCGAGCTGTTCCGCGAGCTGATCCGCCTGAACGGCGTAGGGCCGAAGCTGGCCCTGGCGCTGATGTCCGGGCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/1393777‑1393928‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gggctgAGGTGTCCTGGGCCTGCACGCAGCGCACCAGTTCATCCACTTCCAGCCCGGACATCAGCGCCAGGGCCAGCTTCGGCCCTACGCCGTTCAGGCGGATCAGCTCGCGGAACAGCTCGCGCTCGCGCTTTTCGGCAAAGCCGTAGAGC < NC_002947/1393971‑1393826 AAACCGTCACGGTGCATACCCACCTGGTCGTGCGCGAAGATGCCCACTTGCTCTACGGCTTTGCCGAAAAGCGCGAGCGCGAGCTGTTCCGCGAGCTGATCCGCCTGAACGGCGTAGGGCCGAAGCTGGCCCTGGCGCTGATGTCCGGG > 4:311038/1‑149 ACCGTCACGGTGCATACCCACCTGGTCGTGCGCGAAGATGCCCACTTGCTCTACGGCTTTGCCGAAAAGCGCGAGCGCGAGCTGTTCCGCGAGCTGATCCGCCTGAACGGCGTAGGGCCGAAGCTGGCCCTGGCGCTGATGTCCGGGCT > 3:188014/1‑149 ACCGTCACGGTGCATACCCACCTGGTCGTGCGCGAAGATGCCCACTTGCTCTACGGCTTTGCCGAAAAGCGCGAGCGCGAGCTGTTCCGCGAGCTGATCCGCCTGAACGGCGTAGGGCCGAAGCTGGCCCTGGCGCTGATGTCCGGGCT > 5:203821/1‑149 GGCTTTGCCGAAAAGCGCGAGCGCGAGCTGTTCCGCGAGCTTATCCGCCTGAACGGCGTAGGGCCGAAGCTGGCCCTGGCGCTGATGTCCGGGCTGAGGTGTCCTGGGCCTGCACGCAGCGCACCAGTTCATCCACTTCCAGCCCGGAC < 5:393504/149‑1 CGAGCGCGAGCTGTTCCGCGAGCTGATCCGCCTGAACGGCGTAGGGCCGAAGCTGGCCCTGGCGCTGATGTCCGGGCTGAGGTGTCCTGGGCCTGCACGCAGCGCAC > 5:173852/1‑107 CGAGCGCGAGCTGTTCCGCGAGCTGATCCGCCTGAACGGCGTAGGGCCGAAGCTGGCCCTGGCGCTGATGTCCGGGCTGAGGTGTCCTGGGCCTGCACGCAGCGCAC < 6:173852/107‑1 TGAGGTGTCCTGGGCCTGCACGCAGCGCACCAGTTCATCCACTTCCAGCCCGGACATCAGCGCCAGGGCCAGCTTCGGCCCTACGCCGTTCAGGCGGATCAGCTCGCGGAACAGCTCGCGCTCGCGCTTTTCGGCAAAGCCGTAGAGC > 6:47338/1‑148 AAACCGTCACGGTGCATACCCACCTGGTCGTGCGCGAAGATGCCCACTTGCTCTACGGCTTTGCCGAAAAGCGCGAGCGCGAGCTGTTCCGCGAGCTGATCCGCCTGAACGGCGTAGGGCCGAAGCTGGCCCTGGCGCTGATGTCCGGGCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/1393777‑1393928‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gggctgAGGTGTCCTGGGCCTGCACGCAGCGCACCAGTTCATCCACTTCCAGCCCGGACATCAGCGCCAGGGCCAGCTTCGGCCCTACGCCGTTCAGGCGGATCAGCTCGCGGAACAGCTCGCGCTCGCGCTTTTCGGCAAAGCCGTAGAGC < NC_002947/1393971‑1393826 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |