New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1393928	62 (1.000)	3 (0.050)	3/254	NT	5.6%	coding (279/618 nt)	ruvA	Holliday junction ATP‑dependent DNA helicase RuvA
	?	NC_002947	= 1393971	42 (0.710)					coding (322/618 nt)	ruvA	Holliday junction ATP‑dependent DNA helicase RuvA

CGTCACGGTGCATACCCACCTGGTCGTGCGCGAAGATGCCCACTTGCTCTACGGCTTTGCCGAAAAGCGCGAGCGCGAGCTGTTCCGCGAGCTGATCCGCCTGAACGGCGTAGGGCCGAAGCTGGCCCTGGCGCTGATGTCCGGGCTGGAAGTGGATGAACTGGTGCGCTGCGTGCAGGCCCAGGACACCTCAGCCCTGGTGCGCGTGCCGGGCGTCGGCAAGAAAACCGCCGAGCGCTTGCTGGTCGAGCTCAAGGACCGTTTCAAGGCCTGGGAAACCTCGCCGGCCATGTT  >  NC_002947/1393781‑1394074                                                                                                                                                    |                                                                                                                                                   cGTCACGGTGCATACCCACCTGGTCGTGCGCGAAGATGCCCACTTGCTCTACGGCTTTGCCGAAAAGCGCGAGCGCGAGCTGTTCCGCGAGCTGATCCGCCTGAACGGCGTAGGGCCGAAGCTGGCCCTGGCGCTGATGTCCGGGCTgg                                                                                                                                                   <  6:216281/149‑1 (MQ=255)   tCACGGTGCATACCCACCTGGTCGTGCTCGAAGATGCCCACTTGCTCTACGGCTTTGCCGAAAAGCGCGAGCGCGAGCTGTTCCGCGAGCTGATCCGCCTGAACGGCGTAGGGCCGAAGCTGGCCCTGGCGCTGATGTCCGGGCTGGaa                                                                                                                                                 <  4:340275/149‑1 (MQ=255)   tCACGGTGCATACCCACCTGGTCGTGCGCGAAGATGCCCACTTGCTCTACGGCTTTGCCGAAAAGCGCGAGCGCGAGCTGTTCCGCGAGCTGATCCGCCTGAACGGCGTAGGGCCGAAGCTGGCCCTGGCGCTGATGTCCGGGCTgg                                                                                                                                                   >  3:70453/1‑147 (MQ=255)     aCGGTGCATACCCACCTGGTCGTGCGCGAAGATGCCCACTTGCTCTACGGCTTTGCCGAAAAGCGCGAGCGCGAGCTGTTCCGCGAGCTGATCCGCCTGAACGGCGTAGGGCCGAAGCTGGCCCTGGCGCTGATGTCCGGGCTGGAAGt                                                                                                                                               <  1:380593/149‑1 (MQ=255)       ggTACATACCCACCTGGTCGTGCGCGAAGATGCCCACTTGCTCTACGGCTTTGCCGAAAAGCGCGAGCGCGAGCTGTTCCGCGAGCTGATCCGCCTGAACGGCGTAGGGCCGAAGCTGGCCCTGGCGCTGATGTCCGGGCTGGAAGTgg                                                                                                                                             <  2:211060/149‑1 (MQ=255)        gTGCATACCCACCTGGTCGTGCGCGAAGATGCCCACTTGCTCTACGGCTTTGCCGAAAAGCGCGAGCGCGAGCTGTTCCGCGAGCTTATCCGCCTGAACGGCGTAGGGCCGAAGCTGGCCCTGGCGCTGATGTCCGGGCTGGAAGTGGa                                                                                                                                            <  1:113477/149‑1 (MQ=255)         tGCATACCCACCTGGTCGTGCGCGAAGATGCCCACTTGCTCTACGGCTTTGCCGAAAAGCGCGAGCGCGAGCTGTTCCGCGAGCTGATCCGCCTGAACGGCGTAGGGCCGAAGCTGGCCCTGGCGCTGATGTCCGGGCTGGAAGTGGAt                                                                                                                                           <  7:79441/149‑1 (MQ=255)            aTACCCACCTGGTCGTGCGCGAAGATGCCCACTTGCTCTACGGCTTTGCCGAAAAGCGCGAGCGCGAGCTGTTCCGCGAGCTGATCCGCCTGAACGGCGTAGGGCCGAAGCTGGCCCTGGCGCTGATGTCCGGGCTGGAAGTGGATGa                                                                                                                                         >  7:308445/1‑148 (MQ=255)                ccACCTGGTCGTGCGCGAAGATGCCCACTTGCTCTACGGCTTTGCCGAAAAGCGCGAGCGCGAGCTGTTCCGCGAGCTGATCCGCCTGAACGGCGTAGGGCCGAAGCTGGCCCTGGCGCTGATGTCCGGGCTGGAAGTGGATGAACTgg                                                                                                                                    >  7:327640/1‑149 (MQ=255)                 cACCTGGTCGTGCGCGAAGATGCCCACTTGCTCTACGGCTTTGCCGAAAAGCGCGAGCGCGAGCTGTTCCGCGAGCTGATCCGCCTGAACGGCGTAGGGCCGAAGCTGGCCCTGGCGCTGATGTCCGGGCTGGAAGTGGATGAACTGGt                                                                                                                                   >  8:151657/1‑149 (MQ=255)                  aCCTGGTCGTGCGCGAAGATGCCCACTTGCTCTACGGCTTTGCCGAAAAGCGCGAGCGCGAGCTGTTCCGCGAGCTGATCCGCCTGAACGGCGTAGGGCCGAAGCTGGCCCTGGCGCTGATGTCCGGGCTGGAAGTGGATGAACTGGTg                                                                                                                                  <  5:316763/149‑1 (MQ=255)                   ccTGGTCGTGCGCGAAGATGCCCACTTGCTCTACGGCTTTGCCGAAAAGCGCGAGCGCGAGCTGTTCCGCGAGCTGATCCGCCTGAACGGCGTAGGGCCGAAGCTGGCCCTGGCGCTGATGTCCGGGCTGGAAGTGGATGAACTGGTgc                                                                                                                                 >  3:218560/1‑149 (MQ=255)                       gTCGTGCGCGAAGATGCCCACTTGCTCTACGGCTTTGCCGAAAAGCGCGAGCGCGAGCTGTTCCGCGAGCTGATCCGCCTGAACGGCGTAGGGCCGAAGCTGGCCCTGGCGCTGATGTCCGGGCTGGAAGTGGATGAACTGGTGCGCt                                                                                                                              <  5:152605/148‑1 (MQ=255)                       gTCGTGCGCGAAGATGCCCACTTGCTCTACGGCTTTGCCGAAAAGCGCGAGCGCGAGCTGTTCCGCGAGCTGATCCGCCTGAACGGCGTAGGGCCGAAGCTGGCCCTGGCGCTGATGTCCGGGCTGGAAGTGGATGAACTGGTGCGCTg                                                                                                                             >  5:113530/1‑149 (MQ=255)                          gTGCGCGAAGATGCCCACTTGCTCTACGGCTTTGCCGAAAAGCGCGAGCGCGAGCTGTTCCGCGAGCTGATCCGCCTGAACGGCGTAGGGCCGAAGCTGGCCCTGGCGCTGATGTCCGGGCTGGAAGTGGATGAACTGGTGCGCTGCGt                                                                                                                          <  2:229606/149‑1 (MQ=255)                             cgcgAAGATGCCCACTTGCTCTACGGCTTTGCCGAAAAGCGCGAGCGCGAGCTGTTCCGCGAGCTGATCCGCCTGAACGGCGTAGGGCCGAAGCTGGCCCTGGCGCTGATGTCCGGGCTGGAAGTGGATGAACTGGTGCGCTGCGTg                                                                                                                         >  2:320974/1‑147 (MQ=255)                              gcgAAGATGCCCACTTGCTCTACGGCTTTGCCGAAAAGCGCGAGCGCGAGCTGTTCCGCGAGCTGATCCGCCTGAACGGCGTAGGGCCGAAGCTGGCCCTGGCGCTGATGTCCGGGCTGGAAGTGGATGAACTGGTGCGCTGCGTGCAg                                                                                                                      >  4:312951/1‑149 (MQ=255)                               cgAAGATGCCCACTTGCTCTACGGCTTTGCCGAAAAGCGCGAGCGCGAGCTGTTCCGCGAGCTGATCCGCCTGAACGGCGTAGGGCCGAAGCTGGCCCTGGCGCTGATGTCCGGGCTGGAAGTGGATGAACTGGTGCGCTGCGTGCAgg                                                                                                                     <  6:113530/149‑1 (MQ=255)                                  aGATGCCCACTTGCTCTACGGCTTTGCCGAAAAGCGCGAGCGCGAGCTGTTCCGCGAGCTGATCCGCCTGAACGGCGTAGGGCCGAAGCTGGCCCTGGCGCTGATGTCCGGGCTGGAAGTGGATGAACTGGTGCGCTGCGTGCAGGccc                                                                                                                  <  8:64985/149‑1 (MQ=255)                                   gATGCCCACTTGCTCTACGGCTTTGCCGAAAAGCGCGAGCGCGAGCTGTTCCGCGAGCTGATCCGCCTGAACGGCGTAGGGCCGAAGCTGGCCCTGGCGCTGATGTCCGGGCTGGAAGTGGATGAACTGGTGCGCTGCGTGCAGGCCCa                                                                                                                 <  4:188014/149‑1 (MQ=255)                                    aTGCCCACTTGCTCTACGGCTTTGCCGAAAAGCGCGAGCGCGAGCTGTTCCGCGAGCTGATCCGCCTGAACGGCGTAGGGCCGAAGCTGGCCCTGGCGCTGATGTCCGGGCTGGAAGTGGATGAACTGGTGCGCTGCGTGCAGGCCCAg                                                                                                                <  7:115022/149‑1 (MQ=255)                                      gcacACTTGCTCTACGGCTTTGCCGAAAAGCGCGCGCTCGAGCTGTTCCGCGAGCTGATCCGCCTGACCGGCGTAGGGCCGAAGCTGGCCCTGGCGCTGATGGCCGTGCTgg                                                                                                                                                   <  4:76222/109‑1 (MQ=255)                                      gCCCACTTGCTCTACGGCTTTGCCGAAAAGCGCGAGCGCGAGCTGTTCCGCGAGCTGATCCGCCTGAACGGCGTAGGGCCGAAGCTGGACCTGGCGATGATGTCCGGGCTgg                                                                                                                                                   >  3:76222/1‑112 (MQ=255)                                       cccACTTGCTCTACGGCTTTGCCGAAAAGCGCGAGCGCGAGCTGTTCCGCGAGCTGATCCGCCTGAACGGCGTAGGGCCGAAGCTGGCCCTGGCGCTGATGTCCGGGCTGGAAGTGGATGAACTGGTGCGCTGCGTGCAGGCCCAGGac                                                                                                             <  4:70453/149‑1 (MQ=255)                                       cccACTTGCTCTACGGCTTTGCCGAAAAGCGCGAGCGCGAGCTGTTCCGCGAGCTGATCCGCCTGAACGGCGTAGGGCCGAAGCTGGCCCTGGCGCTGATGTCCGGGCTGGAAGTGGATGAACTGGTGCGCTGCGTGCAGGCCCAGGa                                                                                                              <  3:245266/148‑1 (MQ=255)                                       cccACTTGCTCTACGGCTTTGCCGAAAAGCGCGAGCGCGAGCTGTTCCGCGAGCTGATCCGCCTGAACGGCGTAGGGCCGAAGCTGGCCCTGGCGCTGATGTCCGGGCTGGAAGTGGATGAACTGGTGCGCTGCGTGCAGGCCCAGGa                                                                                                              <  8:308445/148‑1 (MQ=255)                                        ccACTTGCTCTACGGCTTTGCCGAAAAGCGCGAGCGCGAGCTGTTCCGCGAGCTGATCCGCCTGAACGGCGTAGGGCCGAAGCTGGCCCTGGCGCTGATGTCCGGGCTGGAAGTGGATGAACTGGTGCGCTGCGTGCAGGCCCAGGaca                                                                                                            >  8:80981/1‑149 (MQ=255)                                        ccACTTGCTCTACGGCTTTGCCGAAAAGCGCGAGCGCGAGCTGTTCCGCGAGCTGATCCGCCTGAACGGCGTAGGGCCGAAGCTGGCCCTGGCGCTGATGTCCGGGCTGGAAGTGGATGAACTGGTGCGCTGCGTGCAGGCCCAGGaca                                                                                                            >  5:47338/1‑149 (MQ=255)                                         cACTTGCTCTACGGCTTTGCCGAAAAGCGCGAGCGCGAGCTGTTCCGCGAGCTGATCCGCCTGAACGGCGTAGGGCCGAAGCTGGCCCTGGCGCTGATGTCCGGGCTGGAAGTGGATGAACTGGTGCGCTGCGTGCAGGCCCAGGacac                                                                                                           >  2:52851/1‑149 (MQ=255)                                              gCTCTACGGCTTTGCCGAAAAGCGCGAGCGCGAGCTGTTCCGCGAGCTGATCCGCCTGAACGGCGTAGGGCCGAAGCTGGCCCTGGCGCTGATGTCCGGGCTGGAAGTGGATGAACTGGTGCGCTGCGTGCAGGCCCAGGACACCTca                                                                                                       >  6:47338‑M2/1‑146 (MQ=255)                                                  tACGGCTTTGCCGAAAAGCGCGAGCGCGAGCTGTTCCGCGAGCTGATCCGCCTGAACGGCGTAGGGCCGAAGCTGGCCCTGGCGCTGATGTCCGGGCTGGAAGTGGATGAACTGGTGCGCTGCGTGCAGGCCCAGGACACCTCAGCCCt                                                                                                  >  6:191566/1‑149 (MQ=255)                                                    cGGCTTTGCCGAAAAGCGCGAGCGCGAGCTGTTCCGCGAGCTGATCCGCCTGAACGGCGTAGGGCCGAAGCTGGCCCTGGCGCTGATGTCCGGGCTGGAAGTGGATGAACTGGTGCGCTGCGTGCAGGCCCAGGACACCTCAGCCCt                                                                                                  <  1:320974/147‑1 (MQ=255)                                                     ggCTTTGCCGAAAAGCGCGAGCGCGAGCTGTTCCGCGAGCTTATCCGCCTGAACGGCGTAGGGCCGAAGCTGGCCCTGGCGCTGATGTCCGGGCTGaggtgtcctgggcctgcacgcagcgcaccagttcatccacttccagcccggac                                                                                               <  5:393504‑M1/149‑54 (MQ=255)                                                      gCTTTGCCGAAAAGCGCGAGCGCGAGCTGTTCCGCGAGCTGATCCGCCTGAACGGCGTAGGGCCGAAGCTGGCCCTGGCGCTGATGTCCGGGCTGGAAGTGGATGAACTGGTGCGCTGCGTGCAGGCCCAGGACACCTCAGCCCTGGTg                                                                                              >  5:215412/1‑149 (MQ=255)                                                            ccGAAAAGCGCGAGCGCGAGCTGTTCCGCGAGCTGATCCGCCTGAACGGCGTAGGGCCGAAGCTGGCCCTGGCGCTGATGTCCGGGCTGGAAGTGGATGAACTGGTGCGCTGCGTGCAGGCCCAGGACACCTCAGCCCTGGTGCGCGt                                                                                         <  7:151657/148‑1 (MQ=255)                                                             cGAAAAGCGCGAGCGCGAGCTGTTCCGCGAGCTGATCCGCCTGAACGGCGTAGGGCCGAAGCTGGCCCTGGCGCTGATGTCCGGGCTGGAAGTGGATGAACTGGTGCGCTGCGTGCAg                                                                                                                      <  6:48431/118‑1 (MQ=255)                                                             cGAAAAGCGCGAGCGCGAGCTGTTCCGCGAGCTGATCCGCCTGAACGGCGTAGGGCCGAAGCTGGCCCTGGCGCTGATGTCCGGGCTGGAAGTGGATGAACTGGTGCGCTGCGTGCAg                                                                                                                      >  5:48431/1‑118 (MQ=255)                                                             cGAAAAGCGCGAGCGCGAGCTGTTCCGCGAGCTGATCCGCCTGAACGGCGTAGGGCCGAAGCTGGCCCTGGCGCTGATGTCCGGGCTGGAAGTGGATGAACTGGTGCGCTGCGTGCAGGCCCAGGACACCTCAGCCCTGGTGCGCGTGc                                                                                       >  7:50286/1‑149 (MQ=255)                                                              gAAAAGCGCGAGCGCGAGCTGTTCCGCGAGCTGATCCGCCTGAACGGCGTAGGGCCGAAGCTGGCCCTGGCGCTGATGTCCGGGCTGGAAGTg                                                                                                                                              <  5:116912/93‑1 (MQ=255)                                                              gAAAAGCGCGAGCGCGAGCTGTTCCGCGAGCTGATCCGCCTGAACGGCGTAGGGCCGAAGCTGGCCCTGGCGCTGATGTCCGGGCTGGAAGTg                                                                                                                                              >  6:116912/1‑93 (MQ=255)                                                                aaaGCGCGAGCGCGAGCTGTTCCGCGAGCTGATCCGCCTGAACGGCGTAGGGCCGAAGCTGGCCCTGGCGCTGATGTCCGGGCTGGAAGTGGATGAACTGGTGCGCTGCGTGCAGGCCCAGGACACCTCAGCCCTGGTGCGCGTGCCgg                                                                                    <  5:191353/149‑1 (MQ=255)                                                                  agcgcgagcgcgAGCTGTTCCGCGAGCTGATCCGCCTGAACGGCGTAGGGCCGAAGCTGGCCCTGGCGCTGATGTCCGGGCTGGAAGTGGATGAACTGGTGCGCTGCGTGCAGGCCCAGGACACCTCAGCCCTGGTGCGCGTGCCGGGc                                                                                  <  5:68648/149‑1 (MQ=255)                                                                     gcgagcgcgagcTGTTCCGCGAGCTGATCCGCCTGAACGGCGTAGGGCCGAAGCTGGCCCTGGCGCTGATGTCCGGGCTGGAAGTGGATGAACTGGTGCGCTGCGTGCAGGCCCAGGACACCTCAGCCCTGGTGCGCGTGCCGGGCGTc                                                                               <  3:233734/149‑1 (MQ=255)                                                                      cgagcgcgagcTGTTCCGCGAGCTGATCCGCCTGAACGGCGTAGGGCCGAAGCTGGCCCTGGCGCTGATGTCCGGGCTGaggtgtcctgggcctgcacgcagcgcac                                                                                                                        >  5:173852‑M1/1‑79 (MQ=255)                                                                      cgagcgcgagcTGTTCCGCGAGCTGATCCGCCTGAACGGCGTAGGGCCGAAGCTGGCCCTGGCGCTGATGTCCGGGCTGaggtgtcctgggcctgcacgcagcgcac                                                                                                                        <  6:173852‑M1/107‑29 (MQ=255)                                                                       gagcgcgagcTGTTCCGCGAGCTGATCCGCCTGAACGGCGTAGGGCCGAAGCTGGCCCTGGCGCTGATGTCCGGGCTGGAAGTGGATGAACTGGTGCGCTGCGTGCAGGCCCAGGACACCTCAGCCCTGGt                                                                                               <  5:387385/131‑1 (MQ=255)                                                                       gagcgcgagcTGTTCCGCGAGCTGATCCGCCTGAACGGCGTAGGGCCGAAGCTGGCCCTGGCGCTGATGTCCGGGCTGGAAGTGGATGAACTGGTGCGCTGCGTGCAGGCCCAGGACACCTCAGCCCTGGt                                                                                               >  6:387385/1‑131 (MQ=255)                                                                         gcgcgagcTGTTCCGCGAGCTGATCCGCCTGAACGGCGTAGGGCCGAAGCTGGCCCTGGCGCTGATGTCCGGGCTGGAAGTGGATGAACTGGTGCGCTGCGTGCAGGCCCAGGACACCTCAGCCCTGGTGCGCGTGCCGGGCGTCGGCa                                                                           <  6:203821/149‑1 (MQ=255)                                                                             gagcTGTTCCGCGAGCTGATCCGCCTGAACGGCGTAGGGCCGAAGCTGGCCCTGGCGCTGATGTCCGGGCTGGAAGTGGATGAACTGGTGCGCTGCGTGCAGGCCCAGGACACCTCAGCCCTGGTGCGCGTGCCGGGCGTCGGCAAGa                                                                        >  3:278330/1‑148 (MQ=255)                                                                                 tGTTCCGCGAGCTGATCCGCCTGAACGGCGTAGGGCCGAAGCTGGCCCTGGCGCTGATGTCCGGGCTGGAAGTGGATGAACTGGTGCGCTGCGTGCAGGCCCAGGACACCTCAGCCCTGGTGCGCGTGCCGGGCGTCGGCAAGAAAAcc                                                                   >  5:107810/1‑149 (MQ=255)                                                                                 tGTTCCGCGAGCTGATCCGCCTGAACGGCGTAGGGCCGAAGCTGGCCCTGGCGCTGATGTCCGGGCTGGAAGTGGATGAACTGGTGCGCTGCGTGCAGGCCCAGGACACCTCAGCCCTGGTGCGCGTGCCGGGCGTCGGCAAGAAAAcc                                                                   >  3:92481/1‑149 (MQ=255)                                                                                                tCCGCCTGAACGGCGTAGGGCCGAAGCTGGCCCTGGCGCTGATGTCCGGGCTGGAAGTGGATGAACTGGTGCGCTGCGTGCAGGCCCAGGACACCTCAGCCCTGGTGCGCGTGCCGGGCGTCGGCAAGAAAACCGCCGAGCGCTTGCTg                                                    >  6:352896/1‑149 (MQ=255)                                                                                                 ccGCCTGAACGGCGTAGGGCCGAAGCTGGCCCTGGCGCTGATGTCCGGGCTGGAAGTGGATGAACTGGTGCGCTGCGTGCAGGCCCa                                                                                                                 <  8:314608/87‑1 (MQ=255)                                                                                                 ccGCCTGAACGGCGTAGGGCCGAAGCTGGCCCTGGCGCTGATGTCCGGGCTGGAAGTGGATGAACTGGTGCGCTGCGTGCAGGCCCa                                                                                                                 >  7:314608/1‑87 (MQ=255)                                                                                                   gCCTGAACGGCGTAGGGCCGAAGCTGGCCCTGGCGCTGATGTCCGGGCTGGAAGTGGATGAACTGGTGCGCTGCGTGCAGGCCCAGGACACCTCAGCCCTGGTGCGCGTGCCGGGCGTCGGCAAGAAAACCGCCGAGCGCTTGCTGGTc                                                 <  5:327726/149‑1 (MQ=255)                                                                                                   gCCTGAACGGCGTAGGGCCGAAGCTGGCCCTGGCGCTGATGTCCGGGCTGGAAGTGGATGAACTGGTGCGCTGCGTGCAGGCCCAGGACACCTCAGCCCTGGTGCGCGTGCCGGGCATCGGCAAGAAAACCGCCGAGCGCTTGCTGGTc                                                 >  5:381858/1‑149 (MQ=255)                                                                                                                    ccGAAGCTGGCCCTGGCGCTGATGTCCGGGCTGGAAGTGGATGAACTGGTGCGCTGCGTGCAGGCCCAGGACACCTCAGCCCTGGTGCGCGTGCCGGGCGTCGGCAAGAAAACCGCCGAGCGCTTGCTGGTCGAGCTCAAGGACCGttt                                >  1:379446/1‑149 (MQ=255)                                                                                                                      gAAGCTGGCCCTGGCGCTGATGTCCGGGCTGGAAGTGGATGAACTGGTGCGCTGCGTGCAGGCCCAGGACACCTCAGCCCTGGTGCGCGTGCCGGGCGTCGGCAAGAAAACCGCCGAGCGCTTGCTGGTCGAGCTCAAGGACCGTTTc                               >  3:290409/1‑148 (MQ=255)                                                                                                                             gCCCTGGCGCTGATGTCCGGGCTGGAAGTGGATGAACTGGTGCGCTGCGTGCAGGCCCAGGACACCTCAGCCCTGGTGCGCGTGCCGGGCGTCGGCAAGAAAACCGCCGAGCGCTTGCTGGTCGAGCTCAAGGACCGTTTCAAGGCCTg                       <  8:327640/149‑1 (MQ=255)                                                                                                                               ccTGGCGCTGATGTCCGGGCTGGAAGTGGATGAACTGGTGCGCTGCGTGCAGGCCCAGGACACCTCAGCCCTGGTGCGCGTGCCgg                                                                                    <  6:376217/86‑1 (MQ=255)                                                                                                                               ccTGGCGCTGATGTCCGGGCTGGAAGTGGATGAACTGGTGCGCTGCGTGCAGGCCCAGGACACCTCAGCCCTGGTGCGCGTGCCgg                                                                                    >  5:376217/1‑86 (MQ=255)                                                                                                                               ccTGGCGCTGATGTCCGGGCTGGAAGTGGAGGAACTGGTGCGCTGCGTGCAGGCCCAGGACACCTCAGCCCTGGTGCGCGTGCCGGGCGTCGGCAAGAAAACCGCCGAGCGCTTGCTGGTCGAGCTCAAGGACCGTTTCAAGGCCTggg                     <  4:25580/149‑1 (MQ=255)                                                                                                                                     gcTGATGTCCGGGCTGGAAGTGGATGAACTGGTGCGCTGCGTGCAGGCCCAGGACACCTCAGCCCTGGTGCGCGTGCCGGGCGTCGGCa                                                                           >  5:103417/1‑89 (MQ=255)                                                                                                                                     gcTGATGTCCGGGCTGGAAGTGGATGAACTGGTGCGCTGCGTGCAGGCCCAGGACACCTCAGCCCTGGTGCGCGTGCCGGGCGTCGGCa                                                                           <  6:103417/89‑1 (MQ=255)                                                                                                                                           gTCCGGGCTTGAAGTGGATGAACTGGTGCGCTGCGTGCAGGCCCAGGACACCTCAGCCCTGGTGCGCGTGCCGGGCGTCGTCAAGAAAACCGCCGAGCGCTTGCTGGTCGAGCTCAAGGACCGTTTCAAGGCCTGGGAAACCTCGCCg          <  4:218560/148‑1 (MQ=255)                                                                                                                                           gTCCGGGCTGGAAGTGGATGAACTGGTGCGCTGCGTGCAGGCCCAGGACACCTcagcccggacatcagcgccagggccagcttcggccctacgccgttcaggcggataagctcgcggaacagctcgcgctcgcgcttttcggcaaagcc         <  5:393504‑M2/149‑97 (MQ=255)                                                                                                                                           gTCCGGGCTGGAAGTGGATGAACTGGTGCGCTGCGTGCAGGCCCAGGACACCTCAGCCCTGGTGCGCGTGCCGGGCGTCGGCAAGAAAACCGCCGAGCGCTTGCTGGTCGAGCTCAAGGACCGTTTCAAGGCCTGGGAAGCCTCGCCgg         >  8:356324/1‑149 (MQ=255)                                                                                                                                           cccggggCTGGAAGTGGATGAACTGGTGCGCTGCGTGCAGGCCCAGGACACCTCAGCCCTGGTGCGCGTGCCGGGCGTCGGCAAGAAAACCGCCGAGCGCTTGCTGGTCGAGCTCAAGGACCGTTTCAAGGCCTGGGAAACCTCGCCgg         <  1:332437/145‑1 (MQ=255)                                                                                                                                            tCCGGGCTGGAAGTGGATGAACTGGTGCGCTGCGTGCAGGCCCAGGACACCTCAGCCCTGGTGCGCGTGCCGGGCGTCGGCAAGAAAACCGCCGAGCGCTTGCTGGTCGAGCTCAAGGACCGTTTCAAGGCCTGGGAAACCTCGCCGGc        <  4:92481/149‑1 (MQ=255)                                                                                                                                              cGGGCTGGAAGTGGATGAACTGGTGCGCTGCGTGCAGGCCCAGGACACCTCAGCCCTGGTGCGCGTGCCGGGCGTCGGCAAGAAAACCGCCGAGCGCTTGCTGGTCGAGCTCAAGGACCGTTTCAAGGCCTGGGAAACCTCGCCGGCCa      >  6:50539/1‑149 (MQ=255)                                                                                                                                              cGGGCTGGAAGTGGATGAACTGGTGCGCTGCGTGCAGGCCCAGGACACCTCAGCCCTGGTGCGCGTGCCGGGCGTCGGCAAGAAAACCGCCGAGCGCTTGCTGGTCGAGCTCAAGGACCGTTTCAAGGCCTGGGAAACCTCGCCGGCCa      >  4:321640/1‑149 (MQ=255)                                                                                                                                              cGGGCTGGAAGTGGATGAACTGGTGCGCTGCGTGCAGGCCCAGGACACCTCAGCCCTGGTGCGCGTGCCGGGCGTCGGCAAGAAAACCGCCGAGCGCTTGCTGGTCGAGCTCAAGGACCGTTTCAAGGCCTGGGAAACCTCGCCGGCCa      >  4:61933/1‑149 (MQ=255)                                                                                                                                               gggCTGGAAGTGGATGAACTGGTGCGCTGCGTGCAGGCCCAGGACACCTCAGCCCTGGTGCGCGTGCCGGGCGTCGGCAAGAAAACCGCCGAGCGCTTGCTGGTCGAGCTCAAGGACCGTTTCAAGGCCTGGGAAACCTCGCCGGCCAt     <  6:215412/149‑1 (MQ=255)                                                                                                                                                   tGaggtgtcctgggcctgcacgcagcgcaccagttcatccacttccagcccggacatcagcgccagggccagcttcggccctacgccgttcaggcggatcagctcgcggaacagctcgcgctcgcgcttttcggcaaagccgtagagc  >  6:47338‑M1/1‑2 (MQ=255)                                                                                                                                                    |                                                                                                                                                   CGTCACGGTGCATACCCACCTGGTCGTGCGCGAAGATGCCCACTTGCTCTACGGCTTTGCCGAAAAGCGCGAGCGCGAGCTGTTCCGCGAGCTGATCCGCCTGAACGGCGTAGGGCCGAAGCTGGCCCTGGCGCTGATGTCCGGGCTGGAAGTGGATGAACTGGTGCGCTGCGTGCAGGCCCAGGACACCTCAGCCCTGGTGCGCGTGCCGGGCGTCGGCAAGAAAACCGCCGAGCGCTTGCTGGTCGAGCTCAAGGACCGTTTCAAGGCCTGGGAAACCTCGCCGGCCATGTT  >  NC_002947/1393781‑1394074

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.