| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 1880754 = | 70 (1.130) | 4 (0.070) | 4/256 | NT | 5.8% | coding (428/930 nt) | PP_1688 | LysR family transcriptional regulator |
| ? | NC_002947 | 1880799 = | 63 (1.060) | coding (473/930 nt) | PP_1688 | LysR family transcriptional regulator | |||||
CGAAACACCAGGCAACGGTGCCCGCGCAAGGCCTCGGGCGTGGCAGGTACGCCAGCGCTCTGCAGGTAACCGGGTGAGGCACAACAAATGAACGGGATGCGGGCGATGCGCCGGGCCAGCAGCTGGTCTTCGAGCTGCGGGGCAATGCGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/1880904‑1880754‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgcaTCGCCCGCATCCCGTTCATTTGTTGTGCCTCACCCGGTTACCTGCAGAGCGCTGGCGTACCTGCCACGCCCGAGGCCTTGCGCGGGCACCGTTGCCTGGTGTTTCGCTATCCGGTGGATGGCCGCTTCTTGCGCTGGGGCTTCATGC > NC_002947/1880799‑1880945 CGAAACACCAGGCAACGGTGCCCGCGCAAGGCCTCGGGCGTGGCAGGTACGCCAGCGCTCTGCAGGTAACCGGGTGAGGCACAACAAATGAACGGGATGCGGGCGATGCGCCGGGCCAGCAGCTGGTCTTCGAGCTGCGGGGCAATGCG > 7:92152/1‑149 GAAACACCAGGCAACGGTGCCCGCGCAAGGCCTCGGGCGTGGCAGGTACGCCAGCGCTCTGCAGGTAACCGGGTGAGGCACAACAAATGAACGGGATGCGGGCGATGCGCCGGGCCAGCAGCTGGTCTTCGAGCTGCGGTGCAATGCGC > 8:356051/1‑149 GAAACACCAGGCAACGGTGCCCGCGCAAGGCCTCGGGCGTGGCAGGTACGCCAGCGCTCTGCAGGTAACCGGGTGAGGCACAACAAATGAACGGGATGCGGGCGATGCGCCGGGCCAGCAGCTGGTCTTCGAGCTGCGGGGCAATGCG > 7:342165/1‑148 GAAACACCAGGCAACGGTGCCCGCGCAAGGCCTCGGGCGAGGCAGCTACGCCAGCGCTCTGCAGGTAACCGGGTGAGGCACAACAAATCAACGGCATGCGGGCGATGCGCCGGGCCAGCAGCTGGTCTTCGAGCTGCGGGGCAATGCG > 8:87410/1‑148 GGCGATGCGCCGGGCCAGCAGCTGGTCTTCGAGCTGCGGGGCAATGCGCATCGCCCGCATCCCGTTCATTTGTTGTGCCTCACCCGGTTACCTGCAGAGCGCTGGCGTACCTGCCACGCCCGAGGCCTTGCGCGGGCACCGTTGCCTGG > 6:4852/1‑149 GCGATGCGCCGGGCCAGCAGCTGGTCTTCGAGCTGCGGGGCAATGCGCATCGCCCGCATCCCGTTCATTTGTTGTGCCTCACCCGGTTACCTGCAGAGCGCTGGCGTACCTGCCACGCCCGAGGCCTTGCGCGGGCACCGTTGCCTGGT > 3:256583/1‑149 TGCGCCGGGCCAGCAGCTGGTCTTCGAGCTGCGGGGCAATGCGCATCGCCCGCATCCCGTTCATTTGTTGTGCCTCACCCGGTTACCTGCAGAGCGCTGGCGTACCTGCCACGCCCGAGGCCTTGCGCGGGCACCGTTGCCTGGTGTTT < 4:256583/149‑1 GCTGCGGGGCAATGCGCATCGCCCGCATCCCGTTCATTTGTTGTGCCTCACCCGGTTACCTGCAGAGCGCTGGCGTACCTGCCACGCCCGAGGCCTTGCGCGGGCACCGTTGCCTGGTGTTTCGCTATCCGGTGGATGGCCGCTTCTTG < 5:4852/149‑1 GCGCATCGCCCGCATCCCGTTCATTTGTTGTGCCTCACCCGGTTACCTGCAGAGCGCTGGCGTACCTGCCACGCCCGAGGCCTTGCGCGGGCACCGTTGCCTGGTGTTTCGCTATCCGGTGGATGGCCGCTTCTTGCGCTGGGGCTTCA > 4:195971/1‑149 GCGCATCGCCCGCATCCCGTTCATTTGTTGTGCCTCACCCGGTTACCTGCAGAGCGCTGGCGTACCTGCCACGCCCGAGGCCTTGCGCGGGCACCGTTGCCTGGTGTTTCGCTATCCGGTGGATGGCCGCTTCTTGCGCTGGGGCTTCA > 8:39010/1‑149 GCATCGCCCGCATCCCGTTCATTTGTTGTGCCTCACCCGGTTACCTGCAGAGCGCTGGCGTACCTACCACGCCCGAGGCCTTGCGCGGGCACCGTTGCCTGGTGTTTCGCTATCCGGTGGATGGCCGCTTCTTGCGCTGGGGCTTCATG > 1:115900/1‑149 CATCGCCCGCATCCCGTTCATTTGTTGTGCCTCACCCGGTTACCTGCAGAGCGCTGGCGTACCTGCCACGCCCGAGGCCTTGCGCGGGCACCGTTGCCTGGTGTTTCGCTATCCGGTGGATGGCCGCTTCTTGCGCTGGGGCTTCATGC < 1:202411/149‑1 CGAAACACCAGGCAACGGTGCCCGCGCAAGGCCTCGGGCGTGGCAGGTACGCCAGCGCTCTGCAGGTAACCGGGTGAGGCACAACAAATGAACGGGATGCGGGCGATGCGCCGGGCCAGCAGCTGGTCTTCGAGCTGCGGGGCAATGCGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/1880904‑1880754‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgcaTCGCCCGCATCCCGTTCATTTGTTGTGCCTCACCCGGTTACCTGCAGAGCGCTGGCGTACCTGCCACGCCCGAGGCCTTGCGCGGGCACCGTTGCCTGGTGTTTCGCTATCCGGTGGATGGCCGCTTCTTGCGCTGGGGCTTCATGC > NC_002947/1880799‑1880945 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |