| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 2271198 = | 43 (0.690) | 4 (0.070) | 4/234 | NT | 11.0% | intergenic (+19/‑201) | PP_2002/PP_t31 | oxidoreductase/tRNA‑Val |
| ? | NC_002947 | 2271280 = | 27 (0.500) | intergenic (+101/‑119) | PP_2002/PP_t31 | oxidoreductase/tRNA‑Val | |||||
TTTACGCAGGTGGCGAAGCTAAGTCAATAGCCCCATTGAATTTTTTTCAAAAAGGCAACGTGATGTGATTGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAGTCGGACATTAACCGTTGTAGGAGCGGGTTTAGCCGCGAAGAGGCCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/2271355‑2271198‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccgcgaagaggccggcACAGGCAATCACATCACGTTGCCTTTTTGAAAAAAATTCAATGGGGCTATTGACTTAGCTTCGCCACCTGCGTAAATTTCGCGGCCTCAGCGAAGCAAACGCAACAAGCAACATCGCGAGGGTGATTAGCTCAGCCGGGAGAGCAT > NC_002947/2271280‑2271425 TTTACGCAGGTGGCGAAGCTAAGTCAATAGCCCCATTGAATTTTTTTCAAAAAGGCAACGTGATGTGATTGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAGTCGGACATTAACCGTTGTAGGAGCGGGTTTAGCCGCGAA < 6:12174/149‑1TTTACGCAGGTGGCGAAGCTAAGTCAATAGCCCCATTGAATTTTTTTCAAAAAGGCAACGTGATGTGATTGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAGTCGGACATTAACCGTTGTAGGAGCGGGTTTAGCCGCGAA < 6:17679/149‑1 GTGGCGAAGCTAAGTCAATAGCCCCATTGAATTTTTTTCAAAAAGGCAACGTGATGTGATTGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAGTCGGACATTAACCGTTGTAGGAGCGGGTTTAGCCGCGAAGAGGCCGGC > 1:276827/1‑149 GTGGCGAAGCTAAGTCAATAGCCCCATTGAATTTTTTTCAAAAAGGCAACGTGATGTGATTGCCTGTGCCGGCCACTTCGCGGGTAAAACCGCTCCTCCAGTAGGGCAATATACCTTGTAGGAGCGGGTTTAGCCGCGAAGAGGGCGGC > 5:214893/1‑149 GGGTAAACCCGCTCCTACAGTCGGACATTAACCGTTGTAGGAGCGGGTTTAGCCGCGAAGAGGCCGGCACAGGCAATCACATCACGTTGCCTTTTTGAAAAAAATTCAATGGGGCTATTGACTTAGCTTCGCCACCTGCGTAAATTTCG > 5:188078/1‑149 CCGCTCCTACAGTCGGACATTAACCGTTGTAGGAGCGGGTTTAGCCGCGAAGAGGCCGGCACAGGCAATCACATCACGTTGCCTTTTTGAAAAAAATTCAATGGGGCTATTGACTTAGCTTC < 5:5363/122‑1 CCGCTCCTACAGTCGGACATTAACCGTTGTAGGAGCGGGTTTAGCCGCGAAGAGGCCGGCACAGGCAATCACATCACGTTGCCTTTTTGAAAAAAATTCAATGGGGCTATTGACTTAGCTTC > 6:5363/1‑122 GTTTAGCCGCGAAGAGGCCGGCACAGGCAATCACATCACGTTGCCTTTTTGAAAAAAATTCAATGGGGCTATTGACTTAGCTTCGCCACCTGCGTAAATTTCGCGGCCTCAGCGAAGCAAACGCAACAAGCAACATCGCGAGGGTGATT < 6:188078/149‑1 CCGCGAAGAGGCCGGCACAGGCAATCACATCACGTTGCCTTTTTGAAAAAAATTCAATGGGGCTATTGACTTAGCTTCGCCACCTGCGTAAATTTCGCGGCCTCAGCGAAGCAAACGCAACAAGCAACATCGCGAGGGTGATTAGCT > 3:364572/1‑147 AGAGGCCGGCACAGGCAATCACATCACGTTGCCTTTTTGAAAAAAATTCAATGGGGCTATTGACTTAGCTTCGCCACCTGCGTAAATTTCGCGGCCTCAGCGAAGCAAACGCAACAAGCAACATCGCGAGGGTGATTAGCTCAGCCGGG < 2:279988/149‑1 GGCCGGCACAGGCAATCACATCACGTTGCCTTTTTGAAAAAAATTCAATGGGGCTATTGACTTAGCTTCGCCACCTGCGTAAATTTCGCGGCCTCAGCGAAGCAAACGCAACAAGCAACATCGCGAGGGTGATTAGCTCAGCCGGGAGA < 5:237259/149‑1 GGCACAGGCAATCACATCACGTTGCCTTTTTGAAAAAAATTCAATGGGGCTATTGACTTAGCTTCGCCACCTGCGTAAATTTCGCGGCCTCAGCGAAGCAAACGCAACAAGCAACATCGCGAGGGTGATTAGCTCAGCCGGGAGAGCAT < 7:275262/149‑1 TTTACGCAGGTGGCGAAGCTAAGTCAATAGCCCCATTGAATTTTTTTCAAAAAGGCAACGTGATGTGATTGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAGTCGGACATTAACCGTTGTAGGAGCGGGTTTAGCCGCGAAGAGGCCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/2271355‑2271198‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccgcgaagaggccggcACAGGCAATCACATCACGTTGCCTTTTTGAAAAAAATTCAATGGGGCTATTGACTTAGCTTCGCCACCTGCGTAAATTTCGCGGCCTCAGCGAAGCAAACGCAACAAGCAACATCGCGAGGGTGATTAGCTCAGCCGGGAGAGCAT > NC_002947/2271280‑2271425 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |