New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2271198 =	43 (0.690)	4 (0.070)	4/234	NT	11.0%	intergenic (+19/‑201)	PP_2002/PP_t31	oxidoreductase/tRNA‑Val
	?	NC_002947	2271280 =	27 (0.500)					intergenic (+101/‑119)	PP_2002/PP_t31	oxidoreductase/tRNA‑Val

GGGCAGGGTAGGGACCGTGGAAGATGTCGCGGCCATGGTTGCCTGGTTGCTGTCACGCCAGGCGGCATTTGTCACCGGCCAGGAGTTTGTGGTCGATGGCGGCATGACCCGCAAGATGATCTATACCTGAGCACCTTGTTTAAACTGCGCCGGCCTCTTCGCGGCTAAACCCGCTCCTACAACGGTTAATGTCCGACTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAATCACATCACGTTGCCTTTTTGAAAAAAATTCAATGGGGCTATTGACTTAGCTTCGCCAC  >  NC_002947/2271050‑2271346                                                                                                                                                     |                                                                                                                                                     gggCAGGGTAGGGACCGTGGAAGATGTCGCGGCCATGGTTGCCTGGTTGCTGTCACGCCAGGCGGCATTTGTCACCGGCCAGGAGTTTGTGGTCGATGGCGGCATGACCCGCAAGATGATCTATACCTGAGCACCTTGTTTAAACTgcg                                                                                                                                                      >  8:320899/1‑149 (MQ=255)   atgctctcccggctgagctaatcaccctcgcgatgttgcttgttgcgtttgcttcgctgaggccgcgaaatttacgcaggtggcgaagctaagtcaatagccccattgaatttttttcaaaaaggcaacgtgatgtgattgcctgtGcc                                                                                                                                                    <  7:275262‑M1/3‑1 (MQ=255)     aGGGTAGGGACCGTGGAAGATGTCGCGGCCATGGTTGCCTGGTTGCTGTCACGCCAGGCGGCATTTGTCACCGGCCAGGAGTTTGTGGTCGATGGCGGCATGACCCGCAAGATGATCTATACCTGAGCACCTTGTTTAAACTGCGCCgg                                                                                                                                                  >  8:304167/1‑149 (MQ=255)       tctcccggctgagctaatcaccctcgcgatgttgcttgttgcgtttgcttcgctgaggccgcgaaatttacgcaggtggcgaagctaagtcaatagccccattgaatttttttcaaaaaggcaacgtgatgtgattgcctgtGCCGGcc                                                                                                                                                <  5:237259‑M1/7‑1 (MQ=255)          cccggctgagctaatcaccctcgcgatgttgcttgttgcgtttgcttcgctgaggccgcgaaatttacgcaggtggcgaagctaagtcaatagccccattgaatttttttcaaaaaggcaacgtgatgtgattgcctgtGCCGGCctct                                                                                                                                             <  2:279988‑M1/10‑1 (MQ=255)                  agctaatcaccctcgcgatgttgcttgttgcgtttgcttcgctgaggccgcgaaatttacgcaggtggcgaagctaagtcaatagccccattgaatttttttcaaaaaggcaacgtgatgtgattgcctgtGCCGGCCTCTTCGCgg                                                                                                                                       >  3:364572‑M1/132‑147 (MQ=255)                     aaGATGTCGCGGCCATGGTTGCCTGGTTGCTGTCACGCCAGGCGGCATTTGTCACCGGCCAGGAGTTTGTGGTCGATGGCGGCATGACCCGCAAGATGATCTATACCTGAGCACCTTGTTTAAACTGCGCCGGCCTCTTCGCGGCTaaa                                                                                                                                  >  2:303136/1‑149 (MQ=255)                      aatcaccctcgcgatgttgcttgttgcgtttgcttcgctgaggccgcgaaatttacgcaggtggcgaagctaagtcaatagccccattgaatttttttcaaaaaggcaacgtgatgtgattgcctgtGCCGGCCTCTTCGCGGCTAAAc                                                                                                                                 <  6:188078‑M1/22‑1 (MQ=255)                        aTGTCGCGGCCATGGGTGCCTGGTTGCTGTCACGCCAGGCGGCATTTGTCACCGGCCAGGAGTTTGTGGTCGATGGCGGCATGACCCGCAAGATGATCTATACCTGAGCACCTTGTTTAAACTGCGCCGGCCTCTTCGCGGCTAAAccc                                                                                                                               <  4:110990/149‑1 (MQ=255)                               ggCCATGGTTGCCTGGTTGCTGTCACGCCAGGCGGCATTTGTCACCGGCCAGGAGTTTGTGGTCGATGGCGGCATGACCCGCAAGATGATCTATACCTGAGCACCTTGTTTAAGCTGCGCCGGCCTCTTCGCGGCTAAACCCGCTCCTa                                                                                                                        >  1:47664/1‑149 (MQ=255)                                   aTGGTTGCCTGGTTGCTGTCACGCCAGGCGGCATTTGTCACCGGCCAGGAGTTTGTGGTCGATGGCGGCATGACCCGCAAGATGATCTATACCTGAGCACCTTGTTTAAACTGCGCCGGCCTCTTCGCGGCTAAACCCGCTCCTACAAc                                                                                                                    <  7:110369/149‑1 (MQ=255)                                   aTGGTTGCCTGGTTGCTGTCACGCCAGGCGGCATTTGTCACCGGCCAGGAGTTTGTGGTCGATGGCGGCATGACCCGCAAGATGATCTATACCTGAGCACCTTGTTTAAACTGCGCCGGCCTCTTCGCGGCTAAACCCGCTCCTACAAc                                                                                                                    <  3:250178/149‑1 (MQ=255)                                          ccTGGTTGCTGTCACGCCAGGCGGCATTTGTCACCGGCCAGGAGTTTGTGGTCGATGGCGGCATGACCCGCAAGATGATCTATACCTGAGCACCTTGTTTAAACTGCGCCGGCCTCTTCGCGGCTAAACCCGCTCCTACAACGGTTAAt                                                                                                             <  7:320899/149‑1 (MQ=255)                                          ccTGGTTGCTGTCACGCCAGGCGGCATTTGTCACCGGCCAGGAGTTTGTGGTCGATGGCGGCATGACCCGCAAGATGATCTATACCTGAGCACCTTGTTTAAACTGCGCCGGCCTCTTCGCGGCTAAACCCGCTCCTACAACGGTTAAt                                                                                                             <  4:305060/149‑1 (MQ=255)                                              gTTGCCGGCACGCCAGGCGGCATTTGTCACCCGCCAGGAGTTTGAGGTCGATGGCGGCATGACCCGCAAGATGATCTATACCTGAGCACCTTGTTTAAACTGCGCCGGCCTCTTCGCGGCTAAACCCGCTCCTACAACGGTTAATGTcc                                                                                                         <  8:358259/149‑1 (MQ=255)                                                 gCTGTCACGCCAGGCGGCATTTGTCACCGGCCAGGAGTTTGTGGTCGATGGCGTCATGACCCGCAAGATGATCTATACCTGAGCACCTTGTTTAAACTGCGCCGGCCTCTTCGCGGCTAAACCCGCTCCTACAACGGTTAATGTCCGa                                                                                                       <  5:379720/148‑1 (MQ=255)                                                 gCTGTCACGCCAGGCGGCATTTGTCACCGGCCAGGAGTTTGTGGTCGATGGCGGCATGACCCGCAAGATGATCTATACCTGAGCACCTTGTTTAAACTGCGCCGGCCTCTTCGCGGCTAAACCCGCTCCTACAACGGTTAATGTCCGa                                                                                                       <  6:239290/148‑1 (MQ=255)                                                 gCTGTCACGCCAGGCGGCATTTGTCACCGGCCAGGAGTTTGTGGTCGATGGCGGCATGACCCGCAAGATGATCTATACCTGAGCACCTTGTTTAAACTGCGCCGGCCTCTTCGCGGCTAAACCCGCTCCTACAACGGTTAATGTCCGa                                                                                                       <  8:66921/148‑1 (MQ=255)                                                 gCTGTCACGCCAGGCGGCATTTGTCACCGGCCAGGAGTTTGTGGTCGATGGCGGCATGACCCGCAAGATGATCTATACCTGAGCACCTTGTTTAAACTGCGCCGGCCTCTTCGCGGCTAAACCCGCTCCTACAACGGTTAATGTCCGa                                                                                                       <  4:109425/148‑1 (MQ=255)                                                     tCACGCCAGGCGGCATTTGTCACCGGCCAGGAGTTTGTGGTCGATGGCGGCATGACCCGCAAGATGATCTATACCTGAGCACCTTGTTTAAACTGCGCCGGCCTCTTCGCGGCTAAACCCGCTCCTACAACGGTTAATGTCCGACTGt                                                                                                   <  5:362851/148‑1 (MQ=255)                                                     tCACGCCAGGCGGCATTTGTCACCGGCCAGGAGTTTGTGGTCGATGGCGGCATGACCCGCAAGATGATCTATACCTGAGCACCTTGTTTAAACTGCGCCGGCCTCTTCGCGGCTAAACCCGCTCCTACAACGGTTAATGTCCGACTGTa                                                                                                  <  3:254289/149‑1 (MQ=255)                                                            aGGCGGCATTTGTCACCGGCCAGGAGTTTGTGGTCGATGGCGGCATGACCCGCAAGATGATCTATACCTGAGCTCCTTGTTTAAACTGCGCCGGCCTCTTCGCGGCTAAACCCGCTCCTACAACGGTTAATGTCCGACTGTAGGAGCgg                                                                                           <  4:195522/149‑1 (MQ=255)                                                            aGGCGGCATTTGTCACCGGCCAGGAGTTTGTGGTCGATGGCGGCATGACCCGCAAGATGATCTATACCTGAGCACCTTGTTTAAACTGCGCCGGCCTCTTCGCGGCTAAACCCGATCCTACAACGGTTAATGTCCGACTGTAGGAGCgg                                                                                           <  4:333665/149‑1 (MQ=255)                                                                    cgaaatttacgcaggtggcgaagctaagtcaatagccccattgaatttttttcaaaaaggcaacgtgatgtgattgcctgtGCCGGCCTCTTCGCGGCTAAACCCGCTCCTACAACGGTTAATGTCCGACTGTAGGAGCGGGTTTAccc                                                                                   >  5:188078‑M1/82‑149 (MQ=255)                                                                            cGGCCAGGAGTTTGTGGTCGATGGCGGCATGACCCGCAAGATGATCTATACCTGAGCACCTTGTTTAAACTGCGCCGGCCTCTTCGCGGCTAAACCCGCTCCTACAACGGTTAATGTCCGACTGTAg                                                                                                 >  7:235978/1‑127 (MQ=255)                                                                            cGGCCAGGAGTTTGTGGTCGATGGCGGCATGACCCGCAAGATGATCTATACCTGAGCACCTTGTTTAAACTGCGCCGGCCTCTTCGCGGCTAAACCCGCTCCTACAACGGTTAATGTCCGACTGTAg                                                                                                 <  8:235978/127‑1 (MQ=255)                                                                            cGGCCAGGAGTTTGTGGTCGATGGCGGCATGACCCGCAAGATGATCTATACCTGAGCACCTTGTTTAAACTGCGCCGGCCTCTTCGCGGCTAAACCCGCTCCTACAACGGTTAATGTCCGACTGTAGGAGCGGGTTTACCCGCGAagag                                                                           <  2:197892/149‑1 (MQ=255)                                                                               ccAGGAGTTTGTGGTCGATGGCGGCATGACCCGCAAGATGATCTATACCTGAGCACCTTGTTTAAACTGCGCCGGCCTCTTCGCGGCTAAACCCGCTCCTACAACGGTTAATGTCCGACTGTAGGAGCGGGTTTACCcgcg                                                                                <  4:215548/141‑1 (MQ=255)                                                                               ccAGGAGTTTGTGGTCGATGGCGGCATGACCCGCAAGATGATCTATACCTGAGCACCTTGTTTAAACTGCGCCGGCCTCTTCGCGGCTAAACCCGCTCCTACAACGGTTAATGTCCGACTGTAGGAGCGGGTTTACCcgcg                                                                                >  3:215548/1‑141 (MQ=255)                                                                                cAGGAGTTTGTGGTCGATGGCGGCATGACCCGCAAGATGATCTATACCTGAGCACCTTGTTTAAACTGCGCCGGCCTCTTCGCGGCTAACCCCGCTCCTACAACGGTTAATGTCCGACTGTAGGAGCGGGTTTACCCGCTAAGAGGCCg                                                                       <  6:47425/149‑1 (MQ=255)                                                                                cAGGAGTTTGTGGTCGATGGCGGCATGACCCGCAAGATGATCTATACCTGAGCACCTTGTTTAAACTGCGCCGGCCTCTTCGCGGCTAAACCCGCTCCTACAACGGTTAATGTCCGACTGTAGGAGCGGGTTTACCCGCGAAGAGGCCg                                                                       <  4:116213/149‑1 (MQ=255)                                                                                 aGGAGTTTGTGGTCGATGGCGGCATGACCCGCAAGATGATCTATACCTGAGCACCTTGTTTAAACTGCGCCGGCCTCTTCGCGGCTAAACCCGCTACTACAACGGTTAATGTCCGACTGTAGGAGCGGGTTTACCCGCGAAGAGGCCgg                                                                      >  6:282077/1‑149 (MQ=255)                                                                                      tttGTGGTCGATGGCGGCATGACCCGCAAGATGATCTATACCTGAGCACCTTGTTTAAACTGCGCCGGCCTCTTCGCGGCTAAAACCGCGCCTACAACGGGTAATGTGCGACTGGAGGAGCGGGGTTACCCGCGAAGAGGCCGGCACAg                                                                 >  6:346041/1‑149 (MQ=39)                                                                                       gaagctaagtcaatagccccattgaatttttttcaaaaaggcaacgtgatgtgattgcctgtGCCGGCCTCTTCGCGGCTAAACCCGCTCCTACAACGGTTAATGTCCGACTGTAGGAGCgg                                                                                           <  5:5363‑M1/60‑1 (MQ=255)                                                                                       gaagctaagtcaatagccccattgaatttttttcaaaaaggcaacgtgatgtgattgcctgtGCCGGCCTCTTCGCGGCTAAACCCGCTCCTACAACGGTTAATGTCCGACTGTAGGAGCgg                                                                                           >  6:5363‑M1/63‑122 (MQ=255)                                                                                        tgtgGTCGATGGCGGCATGACCCGAAAGATGATATATCCCTGAGCACCTTGTTTAAGCTGCGCCGGCCTCTTCGCGGCTAAACCCGCTCCTACAACGGTTAATTTCCGACTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAgg                                                                <  2:47664/148‑1 (MQ=38)                                                                                               gATGGCGGCATGACCCGCAAGATGATCTATACCTGAGCACCTTGTTTAAACTGCGCCGGCCTCTTCGCGGCTAAACCCGCTCCTACAACGGTTAATGTCCGACTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAatcaca                                                        <  5:346041/149‑1 (MQ=255)                                                                                               gATGGCGGCAGGACCCGCAAGATGATCTATACCTGAGCACCTTGTTTAAACTGCGCCGGCCTCTTCGCGGCTAAACCCGCTCCTACAACGGTTAATGTCCGACTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCTatcaca                                                        <  7:247330/149‑1 (MQ=255)                                                                                                   gcggcATGACCCGCAAGATGATCTATACCTGAGCACCTTGTTTAAACTGCGCCGGCCTCTTCGCGGCTAAACCCGCTCCTACAACGGTTAATGTCCGACTGTAGGAGTGGGTTTACCCGCGAAGAGGCCGGCACAGGCAatcacatcac                                                    >  4:100627/1‑149 (MQ=255)                                                                                                       cATGACCCGCAAGATGATCTATACCTGAGCACCTTGTTTAAACTGCGCCGGCCTCTTCGCGGCTAAACCCGCTCCTACAACGGTTAATGTCCGACTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAATCACATCACGTTg                                                <  1:303136/149‑1 (MQ=255)                                                                                                         tGACCCGCAAGATGATCTATACCTGAGCACCTTGTTTAAACTGCGCCGGCCTCTTCGCGGCTAAACCCGCTc                                                                                                                           >  8:95595/1‑72 (MQ=255)                                                                                                         tGACCCGCAAGATGATCTATACCTGAGCACCTTGTTTAAACTGCGCCGGCCTCTTCGCGGCTAAACCCGCTc                                                                                                                           <  7:95595/72‑1 (MQ=255)                                                                                                             ccGCAAGATGATCTATACCTGAGCACCTTGTTTAAACTGCGCCGGCCTCTTCGCGGCTAAACCCGCGCCTACAAAGGTTTATGTCCGACTGTTGGAGCGGGTTTTACCGCGAAGAGGGCGGCACAGGCAATCACATAACGTTGCCgttg                                          >  5:24211/1‑148 (MQ=255)                                                                                                                   gatgatCTATACCTGAGCACCTTGTTTAAACTGCGCCGGCCTCATAGCCGCTAAACCCCCGCCGACAAAGGGTTATTTGGGGCGGTTGGAGCGGGGTTTACCGCGAAGAGGCCGGCACAGGCCATCACAAAACGGTGGCtttttttaa                                     >  6:237259/1‑144 (MQ=255)                                                                                                                       atCTATACCTGAGCACCTTGTTTAAACTGCGCCGGCCTCTTCGCGGCTAAACCCGCTCCTACAACGGTTAATGTCCGACTGTAGGAGTGGGTTTACCCGCGAAGAGGCCGGCACAGGCAATCACATCACGTTGCCTTTTTGaaaaaaa                                 <  3:100627/148‑1 (MQ=255)                                                                                                                           ataCCTGAGCACCTTGTTTAAACTGCGCCGGCCTCTTCGCGGCTAAACCCGCTCCTACAACGGTTAATGTCCGACTg                                                                                                    <  7:94582/77‑1 (MQ=255)                                                                                                                           ataCCTGAGCACCTTGTTTAAACTGCGCCGGCCTCTTCGCGGCTAAACCCGCTCCTACAACGGTTAATGTCCGACTg                                                                                                    >  8:94582/1‑77 (MQ=255)                                                                                                                            taCCTGAGCACCTTGTTTAAACTGCGCCGGCCTCTTCGCGGCTAAACCCGCTCGTACAACTGTTAATGTCCGACTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAATCACATCACGTTGCCTTTTTGAAAAAAAtt                               <  7:304167/145‑1 (MQ=255)                                                                                                                            taCCTGAGCACCTTGTTTAAACTGCGCCGGCCTCTTCGCGGCTAAACCCGCTCCTAAAACGGTTAATGTCCGACTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAATCACATCACGTTGCCTTTTTGAAAAAAATTCa                             <  1:88939/147‑1 (MQ=255)                                                                                                                                           tttAAACTGCGCCGGCCTCTTCGCGGCTAAACCCGCTCCTACAACGGTTAATGTCCGACTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAATCACATCACGTTGCCTTTTTGAAAAAAATTCAATGGGGCTATTGACt              >  2:276827/1‑147 (MQ=255)                                                                                                                                            ttAAACTGCGCCGGCCTCTTCGCGGCTAAACCCGCTCCTACAACGGTTAATGTCCGACTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAATCACATCACGTTGCCTTTTTGAAAAAAATTCAATGGGGCTATTGACTTAg           >  8:275262/1‑149 (MQ=255)                                                                                                                                               aaCTGCGCCGGCCTCTTCGCGGCTAAACCCGCTCCTACAACGGTTAATGTCCGACTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAgg                                                                <  7:112161/93‑1 (MQ=255)                                                                                                                                               aaCTGCGCCGCCCTCTTCGCGGCTAAACCCGCTCCTACAACGGTTAATGTCCGACTGTCGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAATCACATCACGTTGCCTTTCTGAAAAAAATTCAATGGGGCTATTGACTTAGCt         <  6:24211/148‑1 (MQ=255)                                                                                                                                                aCTGCGCCGGCCTCTTCGCGGCTAAACCCGCTCCTACAACGGTTAATGTCCGACTGTAGGAGCGGGTTTACCCGCGAAGAGGc                                                                         <  8:78537/83‑1 (MQ=255)                                                                                                                                                aCTGCGCCGGCCTCTTCGCGGCTAAACCCGCTCCTACAACGGTTAATGTCCGACTGTAGGAGCGGGTTTACCCGCGAAGAGGc                                                                         >  7:78537/1‑83 (MQ=255)                                                                                                                                                     GCCGGCCTCTTCGCGGCTAAACCCGCTCCTACAACGGTTAATGTCCGACTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAATCACATCACGTTGCCTTTTTGAAAAAAATTCAATGGGGCTATTGACTTAGCTTCGCCAc  >  1:276827‑M1/1‑149 (MQ=255)                                                                                                                                                     GCCGCCCTCTTCGCGGCTAAACCCGCTCCTACAAGGTATATTGCCCTACTGGAGGAGCGGTTTTACCCGCGAAGTGGCCGGCACAGGCAATCACATCACGTTGCCTTTTTGAAAAAAATTCAATGGGGCTATTGACTTAGCTTCGCCAc  >  5:214893‑M1/1‑149 (MQ=255)                                                                                                                                                     |                                                                                                                                                     GGGCAGGGTAGGGACCGTGGAAGATGTCGCGGCCATGGTTGCCTGGTTGCTGTCACGCCAGGCGGCATTTGTCACCGGCCAGGAGTTTGTGGTCGATGGCGGCATGACCCGCAAGATGATCTATACCTGAGCACCTTGTTTAAACTGCGCCGGCCTCTTCGCGGCTAAACCCGCTCCTACAACGGTTAATGTCCGACTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAATCACATCACGTTGCCTTTTTGAAAAAAATTCAATGGGGCTATTGACTTAGCTTCGCCAC  >  NC_002947/2271050‑2271346

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.