New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2271198 =	43 (0.690)	4 (0.070)	4/234	NT	11.0%	intergenic (+19/‑201)	PP_2002/PP_t31	oxidoreductase/tRNA‑Val
	?	NC_002947	2271280 =	27 (0.500)					intergenic (+101/‑119)	PP_2002/PP_t31	oxidoreductase/tRNA‑Val

TTTGTGGTCGATGGCGGCATGACCCGCAAGATGATCTATACCTGAGCACCTTGTTTAAACTGCGCCGGCCTCTTCGCGGCTAAACCCGCTCCTACAACGGTTAATGTCCGACTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAATCACATCACGTTGCCTTTTTGAAAAAAATTCAATGGGGCTATTGACTTAGCTTCGCCACCTGCGTAAATTTCGCGGCCTCAGCGAAGCAAACGCAACAAGCAACATCGCGAGGGTGATTAGCTCAGCCGGGAGAGCATCTG  >  NC_002947/2271135‑2271428                                                                                                                                                  |                                                                                                                                                     tttGTGGTCGATGGCGGCATGACCCGCAAGATGATCTATACCTGAGCACCTTGTTTAAACTGCGCCGGCCTCTTCGCGGCTAAAACCGCGCCTACAACGGGTAATGTGCGACTGGAGGAGCGGGGTTACCCGCGAAGAGGCCGGCACAg                                                                                                                                                   >  6:346041/1‑149 (MQ=39)   tgtgGTCGATGGCGGCATGACCCGAAAGATGATATATCCCTGAGCACCTTGTTTAAGCTGCGCCGGCCTCTTCGCGGCTAAACCCGCTCCTACAACGGTTAATTTCCGACTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAgg                                                                                                                                                  <  2:47664/148‑1 (MQ=38)          gATGGCGGCATGACCCGCAAGATGATCTATACCTGAGCACCTTGTTTAAACTGCGCCGGCCTCTTCGCGGCTAAACCCGCTCCTACAACGGTTAATGTCCGACTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAatcaca                                                                                                                                          <  5:346041/149‑1 (MQ=255)          gATGGCGGCAGGACCCGCAAGATGATCTATACCTGAGCACCTTGTTTAAACTGCGCCGGCCTCTTCGCGGCTAAACCCGCTCCTACAACGGTTAATGTCCGACTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCTatcaca                                                                                                                                          <  7:247330/149‑1 (MQ=255)              gcggcATGACCCGCAAGATGATCTATACCTGAGCACCTTGTTTAAACTGCGCCGGCCTCTTCGCGGCTAAACCCGCTCCTACAACGGTTAATGTCCGACTGTAGGAGTGGGTTTACCCGCGAAGAGGCCGGCACAGGCAatcacatcac                                                                                                                                      >  4:100627/1‑149 (MQ=255)                  cATGACCCGCAAGATGATCTATACCTGAGCACCTTGTTTAAACTGCGCCGGCCTCTTCGCGGCTAAACCCGCTCCTACAACGGTTAATGTCCGACTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAATCACATCACGTTg                                                                                                                                  <  1:303136/149‑1 (MQ=255)                        ccGCAAGATGATCTATACCTGAGCACCTTGTTTAAACTGCGCCGGCCTCTTCGCGGCTAAACCCGCGCCTACAAAGGTTTATGTCCGACTGTTGGAGCGGGTTTTACCGCGAAGAGGGCGGCACAGGCAATCACATAACGTTGCCgttg                                                                                                                            >  5:24211/1‑148 (MQ=255)                              gatgatCTATACCTGAGCACCTTGTTTAAACTGCGCCGGCCTCATAGCCGCTAAACCCCCGCCGACAAAGGGTTATTTGGGGCGGTTGGAGCGGGGTTTACCGCGAAGAGGCCGGCACAGGCCATCACAAAACGGTGGCtttttttaa                                                                                                                       >  6:237259/1‑144 (MQ=255)                                  atCTATACCTGAGCACCTTGTTTAAACTGCGCCGGCCTCTTCGCGGCTAAACCCGCTCCTACAACGGTTAATGTCCGACTGTAGGAGTGGGTTTACCCGCGAAGAGGCCGGCACAGGCAATCACATCACGTTGCCTTTTTGaaaaaaa                                                                                                                   <  3:100627/148‑1 (MQ=255)                                       taCCTGAGCACCTTGTTTAAACTGCGCCGGCCTCTTCGCGGCTAAACCCGCTCGTACAACTGTTAATGTCCGACTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAATCACATCACGTTGCCTTTTTGAAAAAAAtt                                                                                                                 <  7:304167/145‑1 (MQ=255)                                       taCCTGAGCACCTTGTTTAAACTGCGCCGGCCTCTTCGCGGCTAAACCCGCTCCTAAAACGGTTAATGTCCGACTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAATCACATCACGTTGCCTTTTTGAAAAAAATTCa                                                                                                               <  1:88939/147‑1 (MQ=255)                                                      tttAAACTGCGCCGGCCTCTTCGCGGCTAAACCCGCTCCTACAACGGTTAATGTCCGACTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAATCACATCACGTTGCCTTTTTGAAAAAAATTCAATGGGGCTATTGACt                                                                                                >  2:276827/1‑147 (MQ=255)                                                       ttAAACTGCGCCGGCCTCTTCGCGGCTAAACCCGCTCCTACAACGGTTAATGTCCGACTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAATCACATCACGTTGCCTTTTTGAAAAAAATTCAATGGGGCTATTGACTTAg                                                                                             >  8:275262/1‑149 (MQ=255)                                                          aaCTGCGCCGGCCTCTTCGCGGCTAAACCCGCTCCTACAACGGTTAATGTCCGACTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAgg                                                                                                                                                  <  7:112161/93‑1 (MQ=255)                                                          aaCTGCGCCGCCCTCTTCGCGGCTAAACCCGCTCCTACAACGGTTAATGTCCGACTGTCGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAATCACATCACGTTGCCTTTCTGAAAAAAATTCAATGGGGCTATTGACTTAGCt                                                                                           <  6:24211/148‑1 (MQ=255)                                                                GCCGGCCTCTTCGCGGCTAAACCCGCTCCTACAACGGTTAATGTCCGACTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAATCACATCACGTTGCCTTTTTGAAAAAAATTCAATGGGGCTATTGACTTAGCTTCGCCAc                                                                                    >  1:276827‑M1/1‑149 (MQ=255)                                                                GCCGCCCTCTTCGCGGCTAAACCCGCTCCTACAAGGTATATTGCCCTACTGGAGGAGCGGTTTTACCCGCGAAGTGGCCGGCACAGGCAATCACATCACGTTGCCTTTTTGAAAAAAATTCAATGGGGCTATTGACTTAGCTTCGCCAc                                                                                    >  5:214893‑M1/1‑149 (MQ=255)                                                                         TTCGCGGCTAAACCCGCTCCTACAACGGTTAATGTCCGACTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAATCACATCACGTTGCCTTTTTGAAAAAAATTCAATGGGGCTATTGACTTAGCTTCGCCACCTGCGTaaa                                                                           <  6:12174‑M1/149‑1 (MQ=255)                                                                         TTCGCGGCTAAACCCGCTCCTACAACGGTTAATGTCCGACTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAATCACATCACGTTGCCTTTTTGAAAAAAATTCAATGGGGCTATTGACTTAGCTTCGCCACCTGCGTaaa                                                                           <  6:17679‑M1/149‑1 (MQ=255)                                                                              gggtaaacccgctcctacagtcggacattaaccgttgtaggagcgggtttagccgcgaagaggccggcACAGGCAATCACATCACGTTGCCTTTTTGAAAAAAATTCAATGGGGCTATTGACTTAGCTTCGCCACCTGCGTAAATTTcg                                                                      >  5:188078‑M2/69‑149 (MQ=255)                                                                                 tAAACCCGCTCCTACAACGGTTAATGTCCGACTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAATCACATCACGTTGCCTTTTTGAAAAAAATTCAATGGGGCTATTGACTTAGCTTCGCCACCTGCGTAAATTTCGCgg                                                                   >  3:95054/1‑149 (MQ=255)                                                                                   aaCCCGCTCCTACAACGGTTAATGTCCGACTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAATCACATCACGTTGCCTTTTTGAAAAAAATTCAATGGGGCTATTGACTTAGCTTCGCCACCTGCGTAAATTTCGCGGc                                                                  <  5:282077/148‑1 (MQ=255)                                                                                      ccgctcctacagtcggacattaaccgttgtaggagcgggtttagccgcgaagaggccggcACAGGCAATCACATCACGTTGCCTTTTTGAAAAAAATTCAATGGGGCTATTGACTTAGCTTc                                                                                         <  5:5363‑M2/62‑1 (MQ=255)                                                                                      ccgctcctacagtcggacattaaccgttgtaggagcgggtttagccgcgaagaggccggcACAGGCAATCACATCACGTTGCCTTTTTGAAAAAAATTCAATGGGGCTATTGACTTAGCTTc                                                                                         >  6:5363‑M2/61‑122 (MQ=255)                                                                                      ccGCTCCTACAACGGTTAATGTCCGACTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAATCACATCACGTTGCCTTTTTGAAAAAAATTCAATGGGGCTATTGACTTAGCTTCGCCACCTGCGTAAATTTCGCGGCCt                                                                >  1:55304/1‑147 (MQ=255)                                                                                              aCAACGGTTAATGTCCGACTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAATCACATCACGTTGCCttttt                                                                                                                           >  1:286857/1‑80 (MQ=255)                                                                                              aCAACGGTTAATGTCCGACTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAATCACATCACGTTGCCttttt                                                                                                                           <  2:286857/80‑1 (MQ=255)                                                                                               cAACGGTTAATGTCCGACTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAATCACATCACGTTGCCTTTTTGAAAAAAATTCAATGGGGCTATTGACTTAGCTTCGCCACCt                                                                                  <  7:150356/120‑1 (MQ=255)                                                                                               cAACGGTTAATGTCCGACTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAATCACATCACGTTGCCTTTTTGAAAAAAATTCAATGGGGCTATTGACTTAGCTTCGCCACCt                                                                                  >  8:150356/1‑120 (MQ=255)                                                                                                aaCGGTTAATGTCCGACTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAATCACATCACGTTGCCTTTTTGAAAAAAATTCAATGGGGCTATTGACTTAGCTTCGCCACCTGCGTAAATTTCGCGGCCTCAGCGAAGCaaa                                                    >  6:295392/1‑149 (MQ=255)                                                                                                     ttAATGTCCGACTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAATCACATCACGTTGCCTTTTTGAAAAAAATTCAATGGGGCTATTGACTTAGCTTCGCCACCTGCGTAAATTTCGCGGCCTCAGCGAAGCAAACGcaa                                               >  5:155969/1‑149 (MQ=255)                                                                                                      tAATGTCCGACTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAATCACATCACGTTGCCTTTTTGAAAAAAATTCAATGGGGCTATTGACTTAGCTTCGCCACCTGCGTAAATTTCGCGGCCTCAGCGAAGCAAACGcaa                                               >  7:123864/1‑148 (MQ=255)                                                                                                              gACTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAATCACATCACGTTGCCTTTTTGAAAAAAATTCAATGGGGCTATTGACTTAGCTTCGCCACCTGCGTAAATTTCGCGGCCTCAGCGAAGCAAACGCAACAAGCAACa                                      >  4:7990/1‑149 (MQ=255)                                                                                                               aCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAATCACATCACGTTGCCTTTTTGAAAAAAATTCAATGGGGCTATTGACTTAGCTTCGCCACCTGCGTAAATTTCGCGGCCTCAGCGAAGCAAACGCAACAAGCAACAt                                     >  1:279988/1‑149 (MQ=255)                                                                                                                       aGCGGGTTTACACGCGAAGAGGCCGGCACAGGCAATCACATCACGTTTCCTTTTTGAAAAAAATTCAATGGGCCTATTGACTTAGCTTCGCCACCTGCGTAAATTTCGCGGCCTCAGCGAAGCAAACGCAACAAGCAACATCGCGAggg                             >  6:229501/1‑149 (MQ=255)                                                                                                                          gggTTTACCCGCGAAGAGGCCGGCACAGGCAATCACATCACGTTGCCTTTTTGAAAAAAATTCAATGGGGCTATTGACTTAGCTTCGCCACCTGCGTAAATTTCGCGGCCTCAGCGAAGCAAACGCAACAAGCAACATCGCGAGGGTGa                          <  5:17679/149‑1 (MQ=255)                                                                                                                          gggTTTACCCGCGAAGAGGCCGGCACAGGCAATCACATCACGTTGCCTTTTTGAAAAAAATTCAATGGGGCTATTGACTTAGCTTCGCCACCTGCGTAAATTTCGCGGCCTCAGCGAAGCAAACGCAACAAGCAACATCGCGAGGGTGa                          <  5:12174/149‑1 (MQ=255)                                                                                                                            gtttagccgcgaagaggccggcACAGGCAATCACATCACGTTGCCTTTTTGAAAAAAATTCAATGGGGCTATTGACTTAGCTTCGCCACCTGCGTAAATTTCGCGGCCTCAGCGAAGCAAACGCAACAAGCAACATCGCGAGGGTGAtt                        <  6:188078‑M2/127‑1 (MQ=255)                                                                                                                                  ccgcgaagaggccggcACAGGCAATCACATCACGTTGCCTTTTTGAAAAAAATTCAATGGGGCTATTGACTTAGCTTCGCCACCTGCGTAAATTTCGCGGCCTCAGCGAAGCAAACGCAACAAGCAACATCGCGAGGGTGATTAGCt                    >  3:364572‑M2/17‑147 (MQ=255)                                                                                                                                        agaggccggcACAGGCAATCACATCACGTTGCCTTTTTGAAAAAAATTCAATGGGGCTATTGACTTAGCTTCGCCACCTGCGTAAATTTCGCGGCCTCAGCGAAGCAAACGCAACAAGCAACATCGCGAGGGTGATTAGCTCAGCCggg            <  2:279988‑M2/139‑1 (MQ=255)                                                                                                                                           ggccggcACAGGCAATCACATCACGTTGCCTTTTTGAAAAAAATTCAATGGGGCTATTGACTTAGCTTCGCCACCTGCGTAAATTTCGCGGCCTCAGCGAAGCAAACGCAACAAGCAACATCGCGAGGGTGATTAGCTCAGCCGGgaga         <  5:237259‑M2/142‑1 (MQ=255)                                                                                                                                               ggcACAGGCAATCACATCACGTTGCCTTTTTGAAAAAAATTCAATGGGGCTATTGACTTAGCTTCGCCACCTGCGTAAATTTCGCGGCCTCAGCGAAGCAAACGCAACAAGCAACATCGCGAGGGTGATTAGCTCAGCCGGGAGAGCAt     <  7:275262‑M2/146‑1 (MQ=255)                                                                                                                                                  acaGGCAATCACATCACGTTGCCTTTTTGAAAAAAATTCAATGGGGCTATTGACTTAGCTTCGCCACCTGCGTAAATTTCGCGGCCTCAGCGAAGCAAACGCAACAAGCAACATCGCGAGGGTGATTAGCTCAGCCGGGAGAGCATCTg  >  2:79920/1‑149 (MQ=255)                                                                                                                                                  |                                                                                                                                                     TTTGTGGTCGATGGCGGCATGACCCGCAAGATGATCTATACCTGAGCACCTTGTTTAAACTGCGCCGGCCTCTTCGCGGCTAAACCCGCTCCTACAACGGTTAATGTCCGACTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAATCACATCACGTTGCCTTTTTGAAAAAAATTCAATGGGGCTATTGACTTAGCTTCGCCACCTGCGTAAATTTCGCGGCCTCAGCGAAGCAAACGCAACAAGCAACATCGCGAGGGTGATTAGCTCAGCCGGGAGAGCATCTG  >  NC_002947/2271135‑2271428

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.