New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 = 229308456 (0.900)4 (0.070) 4/252 NT 7.8% coding (1479/2400 nt) PP_2019 RND family multidrug transporter
?NC_002947 = 2293146 41 (0.700)coding (1541/2400 nt) PP_2019 RND family multidrug transporter

CCTTCGCCGGTGGCCTGTGGTACAGCCAGAACCTGAAGATCGGCGACCTCGACCAGGGCGCACCGGAGCTGCGCCCCGACTCGCGCTACAACCAGGACAACAACTTCATCATCAGCAACTACTCGACCAGTTCCGATGTGCTGGTGATCATGGTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/2292930‑2293084
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑catggtcCACATCAGCTCGTCGATCGGCGCCATGGTCGAGTGGACCGAGCACTTCTCCGACGGCGTCTTGACCATGATCACCAGCACATCGGAACTGGTCGAGTAGTTGCTGATGATGAAGTTGTTGTCCTGGTTGTAGCGCGAGTCGGGGCGC  <  NC_002947/2293146‑2293000
                                                                                                                                                                                                                                                                                                              
CCTTCGCCGGTGGCCTGTGGTACAGCCAGAACCTGAAGATCGGCGACCTCGACCAGGGCGCACCGGAGCTGCGCCCCGACTCGCGCTACAACCAGGACAACAACTTCATCATCAGCAACTACTCGACCAGTTCCGATGTGCTGGTGATC                                                                                                                                                           <  6:122417/149‑1
    CGCCGGTGGCCTGTGGTACAGCCAGAACCTGAAGATCGGCGACCTCGACCAGGGCGCACCGGAGCTGCGCCCCGACTCGCGCTACAACCAGGACAACAACTTCATCATCAGCAACTACTCGACCAGTTCCGATGTGCTGGTGATCATG                                                                                                                                                        <  5:135948/148‑1
     GCCGGTGGCCTGTGGTACAGCCAGAACCTGAAGATCGGCGACCTCGACCAGGGCGCACCGGAGCTGCGCCCCGACTCGCGCTACAACCAGGACAACAACTTCATCATCAGCAACTACTCGACCAGTTCCGATGTGCTGGTGATCATGG                                                                                                                                                       <  7:13638/148‑1
                               CCTGAAGATCGGCGACCTCGACCAGGGCGCACCGGAGCTGCGCCCCGACTCGCGCTACAACCAGGACAACAACTTCATCATCAGCAACTACTCGACCAGTTCCGATGTGCTGGTGATCATGGTC                                                                                                                                                     <  7:270098/124‑1
                               CCTGAAGATCGGCGACCTCGACCAGGGCGCACCGGAGCTGCGCCCCGACTCGCGCTACAACCAGGACAACAACTTCATCATCAGCAACTACTCGACCAGTTCCGATGTGCTGGTGATCATGGTC                                                                                                                                                     >  8:270098/1‑124
                                 TGAAGATCGGCGACCTCGACCAGGGCGCACCGGAGCTGCGCCCCGACTCGCGCTACAACCAGGACAACAACTTCATCATCAGCAACTACTCGACCAGTTACGATGTGCTGGTGATCATGGTCCACATCAGCTCGTCGATCGGCGCCATG                                                                                                                          >  4:16655/1‑149
                                                                                  GCGCTACAACCAGGACAACAACTTCATCATCAGCAACTACTCGACCAGTTCCGATGTGCTGGTGATCATGGTCCACATCAGCTCGTCGATCGGCGCCATGGTCGAGTGGACCGAGCACTTCTCCGACGGCGTCTTGACCATGATCACCA                                                                         <  3:16655/149‑1
                                                                                                               TCAGCAACTACTCGACCAGTTCCGATGTGCTGGTGATCATGGTCCACATCAGCTCGTCGATCGGCGCCATGGTCGAGTGGACCGAGCACTTCTCCGACGGCGTCTTGACC                                                                                   >  3:29232/1‑110
                                                                                                               TCAGCAACTACTCGACCAGTTCCGATGTGCTGGTGATCATGGTCCACATCAGCTCGTCGATCGGCGCCATGGTCGAGTGGACCGAGCACTTCTCCGACGGCGTCTTGACC                                                                                   <  4:29232/110‑1
                                                                                                                                                    CATGGTCCACATCAGCTCGTCGATCGGCGCCATGGTCGAGTGGACCGAGCACTTCTCCGACGGCGTCTTGACCATGATCACCAGCACATCGGAACTGGTCGAGTAGTTGCTGATGATGAAGTTGTTGTCCTGGTTGTAGCGCGAGTCG        <  1:103044/148‑1
                                                                                                                                                    CATGGTCCACATCAGCTCGTCGATCGGCGCCATGGTCGAGTGGACCGAGCACTTCTCCGACGGCGTCTTGACCATGATCACCAGCACATCGGAACTGGTCGAGTAGTTGCTGATGATGAAGTTGTTGTCCTGGTTGTAGCGCGAGTCG        <  1:165038/148‑1
                                                                                                                                                        GTCCACATCAGCTCGTCGATCGGCGCCATGGTCGAGTGGACCGAGCACTTCTCCGACGGCGTCTTGACCATGATCACCAGCACATCGGAACTGGTCGAGTAGTTGCTGATGATGAAGTTGTTGTCCTGGTTGTAGCGCGAGTCGGGGC    <  1:93794/148‑1
                                                                                                                                                         TCCACATCAGCTCGTCGATCGGCGCCATGGTCGAGTGGACCGAGCACTTCTCCTACGGCGTCTTGACCATGATCACCAGCACATCGGAACTGGTCGAGTAGTTGCTGATGATGAAGTTGTTGTCCTGGTTGTAGCGCGAGTCGGGGCGC  <  8:33965/149‑1
                                                                                                                                                         TCCACATCAGCTCGTCGATCGGCGCCATGGTCGAGTGGACCGAGCACTTCTCCGACGGCGTCTTGACCATGATCACCAGCACATCGGAACTGGTCGAGTAGTTGCTGATGATGAAGTTGTTGTCCTGGTTGTAGCGCGAGTCGGGGCGC  <  1:357636/149‑1
                                                                                                                                                                                                                                                                                                              
CCTTCGCCGGTGGCCTGTGGTACAGCCAGAACCTGAAGATCGGCGACCTCGACCAGGGCGCACCGGAGCTGCGCCCCGACTCGCGCTACAACCAGGACAACAACTTCATCATCAGCAACTACTCGACCAGTTCCGATGTGCTGGTGATCATGGTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/2292930‑2293084
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑catggtcCACATCAGCTCGTCGATCGGCGCCATGGTCGAGTGGACCGAGCACTTCTCCGACGGCGTCTTGACCATGATCACCAGCACATCGGAACTGGTCGAGTAGTTGCTGATGATGAAGTTGTTGTCCTGGTTGTAGCGCGAGTCGGGGCGC  <  NC_002947/2293146‑2293000

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.