New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2293084	56 (0.900)	4 (0.070)	4/252	NT	7.8%	coding (1479/2400 nt)	PP_2019	RND family multidrug transporter
	?	NC_002947	= 2293146	41 (0.700)					coding (1541/2400 nt)	PP_2019	RND family multidrug transporter

GCGCCCCGACTCGCGCTACAACCAGGACAACAACTTCATCATCAGCAACTACTCGACCAGTTCCGATGTGCTGGTGATCATGGTCAAGACGCCGTCGGAGAAGTGCTCGGTCCACTCGACCATGGCGCCGATCGACGAGCTGATGTGGACCATGGAAAACACCCCAGGCGTGCAGTCGGCGATTTCCCTGGTCACCGTTTCCAAACAGGTGATCAAGGGCATGAACGAGGGCAGCCTGAAATGGGAAACCCTGTCGCGCAACCCGGACATCCTCAACAACTCCATCGCCCGGG  >  NC_002947/2293000‑2293292                                                                                                                                                   |                                                                                                                                                   gcgcCCCGACTCGCGCTACAACCAGGACAACAACTTCATCATCAGCAACTACTCGACCAGTTCCGATGTGCTGGTGATCATGGTCAAGACGCCGTCGGAGAAGTGCTCGGTCCACTCGACCATGGCGCCGATCGACGAGCTGATGTGga                                                                                                                                                  <  1:357636‑M2/149‑3 (MQ=255) gcgcCCCGACTCGCGCTACAACCAGGACAACAACTTCATCATCAGCAACTACTCGACCAGTTCCGATGTGCTGGTGATCATGGTCAAGACGCCGTAGGAGAAGTGCTCGGTCCACTCGACCATGGCGCCGATCGACGAGCTGATGTGga                                                                                                                                                  <  8:33965‑M2/149‑3 (MQ=255)   gcCCCGACTCGCGCTACAACCAGGACAACAACTTCATCATCAGCAACTACTCGACCAGTTCCGATGTGCTGGTGATCATGGTCAAGACGCCGTCGGAGAAGTGCTCGGTCCACTCGACCATGGCGCCGATCGACGAGCTGATGTGgac                                                                                                                                                 <  1:93794‑M2/148‑4 (MQ=255)      ccGACTCGCGCTACAACCAGGACAACAACTTCATCATCAGCAACTACTCGACCAGTTCCGATGTGCTGGTGATCATGGTCAAGACGCCGTCGGAGAAGTGCTCGGTCCACTCGACCATGGCGCCGATCGACGAGCTGAtgtg                                                                                                                                                    >  2:389536/1‑142 (MQ=255)      ccGACTCGCGCTACAACCAGGACAACAACTTCATCATCAGCAACTACTCGACCAGTTCCGATGTGCTGGTGATCATGGTCAAGACGCCGTCGGAGAAGTGCTCGGTCCACTCGACCATGGCGCCGATCGACGAGCTGAtgtg                                                                                                                                                    <  1:389536/142‑1 (MQ=255)       cGACTCGCGCTACAACCAGGACAACAACTTCATCATCAGCAACTACTCGACCAGTTCCGATGTGCTGGTGATCATGGTCAAGACGCCGTCGGAGAAGTGCTCGGTCCACTCGACCATGGCGCCGATCGACGAGCTGATGTGgaccatg                                                                                                                                             <  1:103044‑M2/148‑8 (MQ=255)       cGACTCGCGCTACAACCAGGACAACAACTTCATCATCAGCAACTACTCGACCAGTTCCGATGTGCTGGTGATCATGGTCAAGACGCCGTCGGAGAAGTGCTCGGTCCACTCGACCATGGCGCCGATCGACGAGCTGATGTGgaccatg                                                                                                                                             <  1:165038‑M2/148‑8 (MQ=255)          cTCGCGCTACAACCAGGACAACAACTTCATCATCAGCAACTACTCGACCAGTTCCGATGTGCTGGTGATCATGGTCAAGACGCCGTCGGAGAAGTGCTCGGTCCACTCGACCATGGCGCCGATCGACGAGCTGATGTGGACCATGGaa                                                                                                                                          <  7:9781/148‑1 (MQ=255)                cTACAACCAGGACAACAACTTCATCATCAGCAACTACTCGACCAGTTCCGATGTGCTGGTGATCATGGTCAAGACGCCGTCGGAGAAGTGCTCGGTCCACTCGACCATGGCGCCGATCGACGAGCTGCTGTGGACCATGGAAAACAccc                                                                                                                                   >  6:319081/1‑149 (MQ=255)                     aCCAGGACAACAACTTCATCATCAGCAACTACTCGACCAGTTCCGATGTGCTGGTGATCATGGTCAAGACGCCGTCGGAGAAGTGCTCGGTCCACTCGACCATGGCGCCGATCGACGAGCTGATGTGGACCATGGAAAACACCCCAGGc                                                                                                                              <  5:75338/149‑1 (MQ=255)                         ggACAACAACTTCATCATCAGCAACTACTCGACCAGTTCCGATGTGCTGGTGATCATGGTCAAGACGCCGTCGGAGAAGTGCTCGGTCCACTCGACCATGGCGCCGATCGACGAGCTGATGTGGACCATGGAAAACACCCCAGGc                                                                                                                              >  5:71781/1‑145 (MQ=255)                         ggACAACAACTTCATCATCAGCAACTACTCGACCAGTTCCGATGTGCTGGTGATCATGGTCAAGACGCCGTCGGAGAAGTGCTCGGTCCACTCGACCATGGCGCCGATCGACGAGCTGATGTGGACCATGGAAAACACCCCAGGc                                                                                                                              <  6:71781/145‑1 (MQ=255)                             aacaacTTCATCATCAGCAACTACTCGACCAGTTCCGATGTGCAGGTGATCATGGTCAAGACGCCGTCGGAGAAGTGCTCGGTCCACTCGACCATGCCGCCGATCGACGAGCTGATGTGGACCATGGAAAACACCCCAGGCGTGCAGTc                                                                                                                      >  3:62420/1‑149 (MQ=255)                                aacTTCATCATCAGCAACTACTCGACCAGTTCCGATGTGCTGGTGATCATGGTCAAGACGCCGTCGGAGAAGTGCTCGGTCCACTCGACCATGGCGCCGATCGACGAGCTGATGTGGACCATGGAACACACCCCAGGCGTGCAGTCGGc                                                                                                                   <  1:61994/149‑1 (MQ=255)                                aacTTCATCATCAGCAACTACTCGACCAGTTCCGATGTGCTGGTGATCATGGTCAAGACGCCGTCGGAGAAGTGCTCGGTCCACTCGACCATGGCGCCGATCGACGAGCTGATGTGGACCATGGAAAACACCCCAGGCGTGCAGTCGGc                                                                                                                   <  2:93794/149‑1 (MQ=255)                                        catcaGCAACTACTCGACCAGTTCCGATGTGCTGGTGATCATGGTCAAGACGCCGTCGGAGAAGTGCTCGGTCCACTCGACCATGGCGCCGATCGACGAGCTGATGTGGACCATGGAAAACACCCCAGGCGTGCAGTCGGCGATTTccc                                                                                                           >  4:334693/1‑149 (MQ=255)                                         atcaGCAACTACTCGACCAGTTCCGATGTGCTGGTGATCATGGTCAAGACGCCGTCGGAGAAGTGCTCGGTCCACTCGACCATGGCGCCGATCGACGAGCTGATGTGGACCATGGAAAACACCCCAGGCGTGCAGTCGGCGATTTccc                                                                                                           <  6:341388/148‑1 (MQ=255)                                         atcaGCAACTACTCGACCAGTTCCGATGTGCTGGTGATCATGGTCAAGACGCCGTCGGAGAAGTGCTCGGTCCACTCGACCATGGCGCCGATCGACGAGCTGATGTGGACCATGGAAAACACCCCAGGCGTGCAGTCGGCGATTTCCCt                                                                                                          <  2:103044/149‑1 (MQ=255)                                         atcaGCAACTACTCGACCAGTTCCGATGTGCTGGTGATCATGGTCAAGACGCCGTCGGAGAAGTGCTCGGTCCACTCGACCATGGCGCCGATCGACGAGCTGATGTGGACCATGGAAAACACCCCAGGCGTGCAGTCGGCGATTTCCCt                                                                                                          <  2:129882/149‑1 (MQ=255)                                         atcaGCAACTACTCGACCAGTTCCGATGTGCTGGTGATCATGGTCAAGACGCCGTCGGAGAAGTGCTCGGTCCACTCGACCATGGCGCCGATCGACGAGCTGATGTGGACCATGGAAAACACCCCAGGCGTGCAGTCGGCGATTTCCCt                                                                                                          >  2:148148/1‑149 (MQ=255)                                         atcaGCAACTACTCGACCAGTTCCGAAGTGCTGGTGATCATGGTCAAGACGCCGTCGGAGAAGTGCTCGGTCCACTCGACCATGGCGCCGATCGACGAGCTGATGTGGACCATGGAAAACACCCCAGGCGTGCAGTCGGCGATTTCCCt                                                                                                          >  1:207485/1‑149 (MQ=255)                                                actactCGACCAGTTCCGATGTGCTGGTGATCATGGTCAAGACGCCGTCGGAGAAGTGCTCGGTCCACTCGACCATGGCGCCGATCGACGAGCTGATGTGGACCATGGAAAACACCCCAGGCGTGCAGTCGGCGATTTCCCTGGTCAcc                                                                                                   >  5:139072/1‑149 (MQ=255)                                                       gACCAGTTCCGATGTGCTGGTGATCATGGTCAAGACGCCGTCGGAGAAGTGCTCGGTCCACTCGACCATGGCGCCGATCGACGAGCTGATGTGGACCATGGAAAACACCCCAGGCGTGCAGTCGGCGATTTCCCTGGTCACCGTTTcc                                                                                             >  5:323997/1‑148 (MQ=255)                                                       gACCAGTTCCGATGTGCTGGTGATCATGGTCAAGACGCCGTCGGAGAAGTGCTCGGTCCACTCGACCATGGCGCCGATCGACGAGCTGATGTGGACCATGGAAAACACCCCAGGCGTGCAGTCGGCGATTTCCCTGGTCACCGTTTc                                                                                              <  2:165038/147‑1 (MQ=255)                                                         ccAGTTCCGATGTGCTGGTGATCATGGTCAAGACGCCGTCGGAGAAGTGCTCGGTCCACTCGACCATGGCGCCGATCGACGAGCTGATGTGGACCATGGAAAACACCCCAGGCGTGCAGTCGGCGATTTCCCTGGTCACCGTTTCCaaa                                                                                          >  2:220261/1‑149 (MQ=255)                                                          cAGTTCCGATGTGCTGGTGATCATGGTCAAGACGCCGTCGGAGAAGTGCTCGGTCCACTCGACCATGGCGCCGATCGACGAGCTGATGTGGACCATGGAAAACACCCCAGGCGTGCAGTCGGCGATTTCCCTGGTCACCGTTTCCaaa                                                                                          >  4:323101/1‑148 (MQ=255)                                                            gTTCCGATGTGCTGTTTATCATTGTCAAGACGCCGTCGGAGAAGTGCTCGGTCCACTCGACGATGGCGCCGATCGAGGAGGTGATGTGGACCATGGATAACACCCCAGGCGTGCAGTCGGCGATTTCCCTGGTCACCGTTTCCAAACAg                                                                                       <  4:62420/149‑1 (MQ=255)                                                            gTTCCGATGTGCTGGTGATCATGGTCAAGACGCCGTCGGAGAAGTGCTCGGTCCACTCGACCATGGCGCCGATCGACGAGCTGATGTGGACCATGGAAAACACCCCAGGCGTGCAGTCGGCGATTTCCCTGGTCACCGTTTCCAAACAg                                                                                       <  2:357636/149‑1 (MQ=255)                                                            gTTCCGATGTGCTGGTGATCATGGTCAAGACGCCGTCGGAGAAGTGCTCGGTCCACTCGACCATGGCGCCGATCGACGAGCTGATGTGGACCATGGAAAACACCCCAGGCGTGCAGTCGGCGATTTCCCTGGTCACCGTTTCCAAACAg                                                                                       <  1:239428/149‑1 (MQ=255)                                                             ttCCGATGTGCTGGTGATCATGGTCAAGACGCCGTCGGAGAAGTGCTCGGTCCACTCGACCATGGCGCCGATCGACGAGCTGATGTGGACCATGGAAAACACCCCAGGCGTGCAGTCGGTGATTTCCCTGGTCACCGTTTCCAAACAgg                                                                                      <  1:45948/149‑1 (MQ=255)                                                                      gCTGGTGATCATGCTGAAGACGCCGTCGGAGAAGTGCTCGGTCCACTCGACCATGGCGCCGATCGACGAGCTGTTGTGGACCATGGAAAACACCCCAGGCGTGCAGTCGGCGATTTCCCTGGTCACCGTTTCCAACCAGGTGATGAAgg                                                                             >  6:351293/1‑149 (MQ=255)                                                                        tGGTGATCATGGTCAAGACGCCGTCGGAGAAGTGCTCGGTCCACTCGACCATGGCGCCGATCGACGAGCTGATGTGgaccatgatcaccagcacatcggaactggtcgagtagttgctgatgatgaagttgttgtcctggttgtagcgc                                                                           <  3:16655‑M2/149‑74 (MQ=255)                                                                            gATCATGGTCAAGACGCCGTCGGAGAAGTGCTCGGTCCACTCGACCATGGCGCCGATCGACGAGCTGATGTGGACCATGGAAAACACCCCAGGCGTGCAGTCGGCGATTTCCCTGGTCACCGTTTCCAAACAGGTGATCAAGGGCATg                                                                        >  2:129942/1‑148 (MQ=255)                                                                                aTGGTCAAGACGCCGTCGGAGAAGTGCTCGGTCCACTCGACCATGGTGCCGATCGACGAGCTGATGTGGACCATGGAAAACACCCCAGGCGTGCAGTCGGCGATTTCCCTGGTCACCGTTTCCAAACAGGTGATCAAGGGCATGAACGa                                                                   <  1:129942/149‑1 (MQ=255)                                                                                 tGGTCAAGACGCCGTCGGAGAAGTGCTCGGTCCACTCGACCATGGCGCCGATCGACGAGCTGATGTGGACCATGGAAAACACCCCAGGCGTGCAGTCGGCGATTTCCCTGGTCACCGTTTCCAAACAGGTGATCAAGGGCATGAACGAg                                                                  <  7:33965/149‑1 (MQ=255)                                                                                  ggTCAAGACGCCGTCGGAGAAGTGCTCGGTCCACTCGACCATGGCGCCGATCGACGAGCTGATGTGgaccatgatcaccagcacatcggaactggtcgagtagttgctga                                                                                                        >  3:29232‑M2/1‑66 (MQ=255)                                                                                  ggTCAAGACGCCGTCGGAGAAGTGCTCGGTCCACTCGACCATGGCGCCGATCGACGAGCTGATGTGgaccatgatcaccagcacatcggaactggtcgagtagttgctga                                                                                                        <  4:29232‑M2/110‑45 (MQ=255)                                                                                    tCAAGACGCCGTCGGAGAAGTGCTCGGTCCACTCGACCATGGCGCCGATCGACGAGCTGATGTGGACCATGGAAAACACCCCAGGCGTGCAGTCGGCGATTTCCCTGGTCACCGTTTCCAAACAGGTGATCAAGGGCATGAACGAggg                                                                >  8:736/1‑148 (MQ=255)                                                                                      aaGACGCCGTCGGAGAAGTGCTCGGTCCACTCGACCATGGCGCCGATCGACGAGCTGATGTGGACCATGGAAAACACCCCAGGCGTGCAGACGGCGATTTCCCTGGTCACCG‑TTACAAACAGGTGATCAAGGGCATGAACGAGGGCacc                                                            >  4:315020/1‑147 (MQ=255)                                                                                         aCGCCGTCGGAGAAGTGCTCGGTCCACTCGACCATGGCGCCGATCGACGAGCTGATGTGGACCATGGAAAACACCCCAGGCGTGCAGTCgg                                                                                                                    <  8:185408/91‑1 (MQ=255)                                                                                                cGGAGAAGTGCTCGGTCCACTCGACCATGGCGCCGATCGACGAGCTGATGTGGACCATGGAAAACACCCCAGGCGTGCAGTCGGCGATTTCCCTGGTCACCGTTTCCAAACAGGTGATCAAGGGCATGAACGAGGGCAGCCTGAAATgg                                                   >  7:305004/1‑149 (MQ=255)                                                                                                 ggAGAAGTGCTCGGTCCACTCGACCATGGCGCCGATCGACGAGCTGATGTGGACCATGGAAAACACCCCAGGCGTGCAGTCGGCGATTTCCCTGGTCACCGTTTCCAAACAGGTGATCATGGGCATGAACGAGGGCAGCCTGAAATgg                                                   <  1:220261/148‑1 (MQ=255)                                                                                                   agaAGTGCTCGGTCCACTCGACCATGGCGCCGATCGACGAGCTGATGTGGACCATGGAAAACACCCCAGGCGTGCAGTCGGCGATTTCCCTGGTCACCGTTTCCAAACAGGTGATCAAGGGCATGAACGAGGGCAGCCTGAAATGGGa                                                 >  5:245134/1‑148 (MQ=255)                                                                                                    gaAGTGCTCGGTCCACTCGACCATGGCGCCGATCGACGAGCTGATGTGGACCATGGAAAACACCCCAGGCGTGCAGTCGGCGATTTCCCTGGTCACCGTTTCCAAACAGGTGATCAAGGGCATGAACGAGGGCAGCCTGAAATGGGaaa                                               <  1:148148/149‑1 (MQ=255)                                                                                                     aaGTGCTCGGTCCACTCGACCATGGCGCCGATCGACGAGCTGATGTGGACCATGGAAAACACCCCAGGCGTGCAGTCGGCGATTTCCCTGGTCACCGTTTCCAAACAGGTGATCAAGGGCATGAACGAGGGCAGCCTGAAATGGGaaa                                               <  3:334693/148‑1 (MQ=255)                                                                                                           tCGGTCCACTCGACCATGGCGCCGATCGACGAGCTGATGTGGACCATGGAAAACACCCCAGGCGTGCAGTCGGCGATTTCCCTGGTCACCGTTTCCAAACAGGTGATCAAGGGCATGAACGAGGGCAGCCTGAAATGGTAAACCCTGTc                                        <  8:104195/149‑1 (MQ=255)                                                                                                                        ccATGGCGCCGATCGACGAGCTGATGTGGACCATGGAAAACACCCCAGGCGTGCAGTCGGCGATTTCCCTGGTCACCGTTTCCAAACAGGTGATCAAGGGCATGAACGAGGGCAGCCTGAAATGGGAAACCCTGTCGCGCAACCCGGa                            >  1:108092/1‑148 (MQ=255)                                                                                                                         cATGGCGCCGATCGACGAGCTGATGTGgaccatgatcaccagcacatcgtaactggtcgagtagttgctgatgatgaagttgttgtcctggttgtagcgcgagtcggggcgcagctccggtgcgccctggtcgaggtcgccgatcttca                          >  4:16655‑M2/1‑27 (MQ=255)                                                                                                                               gcCGATCGACGAGCTGATGTGGACCATGGAAAACACCCCAGGCGTGCAGTCGGCGATTTCCCTGGTCACCGTTTCCAAACAGGTGATCAAGGGCATGAACGAGGGCAGCCTGAAATGGGAAACCCTGTCGCGCAACCCGGACATCCTc                     >  7:339744/1‑148 (MQ=255)                                                                                                                               gcCGATCGACGAGCTGATGTGGACCATGGAAAACACCCAAGGCGTGCAGTCGGCGATTTCCCTGGTCACCGTTTCCAAACAGGTGATCAAGGGCATGAACGAGGGCAGCCTGAAATGGGAAACCCTGTCGCGCAACCCGGACATCCTc                     >  2:348003/1‑148 (MQ=255)                                                                                                                                  gATCGACGAGCTGATGTGGACCATGGAAAACACCCCAGGCGTGCAGTCGGCGATTTCCCTGGTCACCGTTTCCAAACAGGTGATCAACGGCATGAACGAGGGCAGCCTGAAATGGGAAACCCTGTCGCGCAACCCGGACATCCTcaac                  >  2:253418/1‑148 (MQ=255)                                                                                                                                      gacgaGCTGATGTGGACCATGGAAAACACCCCAGGCGTGCAGTCGGCGATTTCCCTGGTCACCGTTTCCAAACAGGTGATCAAGGGCATGAACGAGGGCAGCCTGAAATGGGAAACCCTGTCGCGCAACCCGGACATCCTCAACAACTc             >  1:64680/1‑149 (MQ=255)                                                                                                                                       acgaGCTGATGTGGACCATGGAAAACACCCCAGGCGTGCAGTCGGCGATTTCCCTGGTCACCGTTTCCAAACAGGTGATCAAGGGCATGAACGAGGGCAGCCTGAAATGGGAAACCCTGTCGCGCAACCCGGACATCCTCAACAACTc             >  2:47334/1‑148 (MQ=255)                                                                                                                                            cgatgttgGACCATGGAAATCACCCCAGGCGTGCAGTCGGCGATTTCCCTGGTCACCGTTTCCAAACAGGTGATCAAGGGCATGAACGAGGGCAGCCTGAAATGGGAAACCCTGTCGCGCAACCCGGACATCCTCAACATCTCCATct        <  4:17683/142‑2 (MQ=255)                                                                                                                                                  tgGACCATGGAAAACACCCCAGGCGTGCAGTCGGCGATTTCCCTGGTCACCGTTTCCAAACAGGTGATCAAGGGCATGAACGAGGGCAGCCTGAAATGGGAAACCCTGTCGCGCAACCCGGACATCCTCAACAACTCCATCGCCCggg  <  6:139072/148‑1 (MQ=255)                                                                                                                                                   ggACCATGGAAAACACCCCAGGCGTGCAGTCGGCGATTTACCTCGTCACCGTTTCCAAACAGGTGATCAAGGGCATGAACGAGGGCAGCCTGAAATGGGAAACCCTGTCGCGCAACCCGGACATCCTCAACAACTCCATCg        >  3:17683/1‑141 (MQ=255)                                                                                                                                                   |                                                                                                                                                   GCGCCCCGACTCGCGCTACAACCAGGACAACAACTTCATCATCAGCAACTACTCGACCAGTTCCGATGTGCTGGTGATCATGGTCAAGACGCCGTCGGAGAAGTGCTCGGTCCACTCGACCATGGCGCCGATCGACGAGCTGATGTGGACCATGGAAAACACCCCAGGCGTGCAGTCGGCGATTTCCCTGGTCACCGTTTCCAAACAGGTGATCAAGGGCATGAACGAGGGCAGCCTGAAATGGGAAACCCTGTCGCGCAACCCGGACATCCTCAACAACTCCATCGCCCGGG  >  NC_002947/2293000‑2293292

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.