New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2695284	57 (0.920)	4 (0.070)	4/256	NT	7.0%	coding (1575/2394 nt)	PP_2362	usher protein
	?	NC_002947	= 2695332	51 (0.860)					coding (1623/2394 nt)	PP_2362	usher protein

GAACGAGTACGGCAGCATTGGCGCTGGCTACTTCGATGTGCGCGCCGGTGACGGTACGCGTACCCGGTTGATCAACCTGAGCTACAGCAAGCCGCTGTGGGGCAGCAGCAGTGTGTACCTCTCGGCCAACCGTGAAGTGGGGGACAGCCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/2695134‑2695284 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccagGGTGCCGTGCAGGTCGAACGGGATCACCAGCTGCGCCTGCACCGCCCACTGGCTGTCCCCCACTTCACGGTTGGCCGAGAGGTACACACTGCTGCTGCCCCACAGCGGCTTGCTGTAGCTCAGGTTGATCAACCGGGTACGCGTACC  <  NC_002947/2695332‑2695186                                                                                                                                                                                                                                                                                                            GAACGAGTACGGCAGCATTGGCGCTGGCTACTTCGATGTGCGCGCCGGTGACGGTACGCGTACCCGGTTGATCAACCTGAGCTACAGCAAGCCGCTGTGGGGCAGCAGCAGTGTGTACCTCTCGGCCAACCGTGAAGTGGGGGACAGC                                                                                                                                                        >  5:4338/1‑148  AACGAGTACGGCAGCATTGGCGCTGGCTACTTCGATGTGCGCGCCGGTGACGGTACGCGTACCCGGTTGATCAACCTGAGCTACAGCAAGCCGCTGTGGGGCAGCAGCAGTGTGTACCTCTCGGCCAACCGTGAAGTGGGGGACAGC                                                                                                                                                        <  3:230468/147‑1                                                GTGACGGTACGCGTACCCGGTTGATCAACCTGAGCTACAGCAAGCCGCTGTGGGGCAGCAGCAGTGTGTACCTCTCGGCCAACCGTGAAGTGGGGGACAGCCAGTGGGCGGTGCAGGTCGAACGGGATCACCAGCTGCGCCTGCACCGC                                                                                                        <  6:101210/149‑1                                                          GCGTACCCGGTTGATCAACCTGAGCTACAGCAAGCCGCTGTGGGGCAGCAGCAGTGTGTACCTCTCGGCCAACCGTGAAGTGGGGGACAGCCAGGGTGCCGTGCAGGTCGAACGGGATCACCAGCTGCGCCTGCACCGCCCACTGGCTG                                                                                              <  6:167447/149‑1                                                                                                                              CCAACCGTGAAGTGGGGGACAGCCAGGGTGCCGTGCAGGTCGAACGGGATCACCAGCTGCGCCTGCACCGCCCACTGG                                                                                                 >  5:367160/1‑78                                                                                                                              CCAACCGTGAAGTGGGGGACAGCCAGGGTGCCGTGCAGGTCGAACGGGATCACCAGCTGCGCCTGCACCGCCCACTGG                                                                                                 <  6:367160/78‑1                                                                                                                                                    CCAGGGTGCCGTGCAGGTCGAACGGGATCACCAGCTGCGCCTGCACCGCCCACTGGCTGTCCCCCACTTCACGGTTGGCCGAGAGGTACACACTGCTGCTGCCCCACAGCGGCTTGCTGTAGCTCAGGTTGATCAACCGGGTACGCGTA    <  3:185883/149‑1                                                                                                                                                      AGGGTGCCGTGCAGGTCGAACGGGATCACCAGCTGCGCCTGCACCGCCCACTGGCTGTCCCCCACTTCACGGTTGGCCGAGAGGTACACACTGCTGCTGCCCCACAGCGGCTTGCTGAAGCTCAGGTTGATCAACCGGGTACGCGTACC  <  1:152688/149‑1                                                                                                                                                                                                                                                                                                            GAACGAGTACGGCAGCATTGGCGCTGGCTACTTCGATGTGCGCGCCGGTGACGGTACGCGTACCCGGTTGATCAACCTGAGCTACAGCAAGCCGCTGTGGGGCAGCAGCAGTGTGTACCTCTCGGCCAACCGTGAAGTGGGGGACAGCCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/2695134‑2695284 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccagGGTGCCGTGCAGGTCGAACGGGATCACCAGCTGCGCCTGCACCGCCCACTGGCTGTCCCCCACTTCACGGTTGGCCGAGAGGTACACACTGCTGCTGCCCCACAGCGGCTTGCTGTAGCTCAGGTTGATCAACCGGGTACGCGTACC  <  NC_002947/2695332‑2695186

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.