New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 = 269528457 (0.920)4 (0.070) 4/256 NT 7.0% coding (1575/2394 nt) PP_2362 usher protein
?NC_002947 = 2695332 51 (0.860)coding (1623/2394 nt) PP_2362 usher protein

GGTACGCGTACCCGGTTGATCAACCTGAGCTACAGCAAGCCGCTGTGGGGCAGCAGCAGTGTGTACCTCTCGGCCAACCGTGAAGTGGGGGACAGCCAGTGGGCGGTGCAGGCGCAGCTGGTGATCCCGTTCGACCTGCACGGCACCCTGGCGCTGAGCATGGAACGCAGCAATGAAGGCGAGACCCTGCAACGGGTCAACTACAGCCGTGCGGTGCCAGCCGGTGTCGGCGTCGGTTACAACCTGGGCTATGCCGCAGGCAGCGACCGTGATGCCTATCGCCAGGCC  >  NC_002947/2695186‑2695473
                                                                                                                                                   |                                                                                                                                              
ggTACGCGTACCCGGTTGATCAACCTGAGCTTCAGCAAGCCGCTGTGGGGCAGCAGCAGTGTGTACCTCTCGGCCAACCGTGAAGTGGGGGACAGCCAGTGGGCGGTGCAGGCGCAGCTGGTGATCCCGTTCGACCTGCACGGCACCct                                                                                                                                              <  1:152688‑M2/149‑3 (MQ=255)
  tACGCGTACCCGGTTGATCAACCTGAGCTACAGCAAGCCGCTGTGGGGCAGCAGCAGTGTGTACCTCTCGGCCAACCGTGAAGTGGGGGACAGCCAGTGGGCGGTGCAGGCGCAGCTGGTGATCCCGTTCGACCTGCACGGCACCctgg                                                                                                                                            <  3:185883‑M2/149‑5 (MQ=255)
     gcgTACCCGGTTGATCAACCTGAGCTACAGCAAGCCGCTGTGGGGCAGCAGCAGTGTGTACCTCTCGGCCAACCGTGAAGTGGGGGACAGCCAGTGGGCGGTGCAGGCGCAGCTGGTGATCCCGTTCGACCTGCACGGCACCCTGgcgc                                                                                                                                        >  8:235433/1‑149 (MQ=255)
          cccGGTTGATCAACCTGAGCTAGAGCAAGCCGCTGTGGGGAAGCAGCAGTGTGTACCTATCGGCCAACCGTGAAGTGGGGGACAGCCAGTGGGCGGTGCAGGCGCAGCTGGTGATCCCGTTCGACCTGCACGGCACCCTGGCGCTGat                                                                                                                                    <  3:331540/148‑2 (MQ=255)
             ggTTGATCAACCTGAGCTACAGCAAGCCGCTGTGGGGCAGCAGCAGTGTGTACCTCTCGGCCAACCGTGAAGTGGGGGACAGCCAGTGGGCGGTGCAGGCGCAGCTGGTGATCCCGTTCGACCTGCACGGCACCCTGGCGCTGAGCATg                                                                                                                                <  4:252931/149‑1 (MQ=255)
                 gATCAACCTGAGCTACAGCAAGCCGCTGTGGGGCAGCAGCAGTGTGTACCTCTCGGCCAACCGTGAAGTGGGGGACAGCCAGTGGGCGGTGCAGGCGCAGCTGGTGATCCCGTTCGACCTGCACGGCACCCTGGCGCTGAGCATGGaa                                                                                                                             <  3:250314/148‑1 (MQ=255)
                   tCAACCTGAGCTACAGCAAGCCGCTGTGGGGCAGCAGCAGTGTGTACCTCTCGGCCAACCGTGAAGTGGGGGACAGCCAGTGGGCGGTGCAGGCGCAGCTGGTGATCCCGTTCGACCTGCACGGCACCCTGGCGCTGAGCATGGAACgc                                                                                                                          <  6:4338/149‑1 (MQ=255)
                           aGCTACAGCAAGCCGCTGTGGGGCAGCAGCAGTGTGTACCTCTCGGCCAACCGTGAAGTGGGGGACAGCCAGTGGGCGGTGCAGGCGCAGCTGGTGATCCCGTTCGACCTGCACGGCACCCTGGCGCTGAGCATGGAACGCAGCAATg                                                                                                                   >  3:236583/1‑148 (MQ=255)
                            gCTACAGCAAGCCGCTGTGGGGCAGCAGCAGTGTGTACCTCTCGGCCAACCGTGAAGTGGGGGACAGCCAGTGGGCGGTGCAGGCGCAGCTGGTGATCCCGTTCGACCTGCACGGCACCCTGGCGCTGAGCAGGGAACGCAGCAATg                                                                                                                   >  7:284021/1‑147 (MQ=255)
                              tACAGCAAGCCGCTGTGGGGCAGCAGCAGTGTGTACCTCTCGGCCAACCGTGAAGTGGGGGACAGCCAGTGGGCGGTGCAGGCGCAGCTGGTGATCCCGTTCGACCTGCACGGCACCCTGGCGCTGAGCATGGAACGCAGCAATGAAgg                                                                                                               >  5:50/1‑149 (MQ=255)
                              tACAGCAAGCCGCTGTGGGGCAGCAGCAGTGTGTACCTCTCGGCCAACCGTGAAGTGGGGGACAGCCAGTGGGCGGTGCAGGCGCAGCTGGTGATCCCGTTCGACCTGCACGGCACCCTGGCGCTGAGCATGGAACGCAGCAATGAAgg                                                                                                               >  6:92829/1‑149 (MQ=255)
                                cAGCAAGCCGCTGTGGGGCAGCAGCAGTGTGTACCTCTCGGCCAACCGTGAAGTGGGGGACAGCCAGTGGGCGGTGCAGGCGCAGCTGGTGATCCCGTTCGACCTGCACGGCACCCTGGCGCTGAGCATGGAACGCAGCAATGAAGGc                                                                                                              <  8:284021/148‑1 (MQ=255)
                                 aGCAAGCCGCTGTGGGGCAGCAGCAGTGTGTACCTCTCGGCCAACCGTGAAGTGGGGGACAGCCAGTGGGCGGTGCAGGCGCAGCTGGTGATCCCGTTCGACCTGCACGGCACCCTGGCGCTGAGCATGGAACGCAGCAATGAAGGc                                                                                                              >  6:325302/1‑147 (MQ=255)
                                               gggCAGCAGCAGTGTGTACCTCTCGGCCAACCGTGAAGTGGGGGACAGCCAGTGGGCGGTGCAGGCGCAGCTGGTGATCCCGTTCGACCTGCACGGCACCCTGGCGCTGAGCATGGAACGCAGCAATGAAGGCGAGACCCTGCAACgg                                                                                               <  6:313268/148‑1 (MQ=255)
                                                ggCAGGAGCAGTGTGTACCTCTCGGCCAACCGTGAAGTGGGGGACAGCCAGTGAGCGGTGCAGGCGCAGCTGGTGATCCCGTTCGACCTGCACGGCACCCTGGCGCTGAGCATGGAACGCAGCAATGAAGGCGAGACCCTGCAACGGGt                                                                                             <  3:45691/149‑1 (MQ=255)
                                                 gcagcagcaGTGTGTACCTCTCGGCCAACCGTGAAGTGGGGGCCAGCCAGTGGGCGGTGCAGGCGCAGCTGGTGATCCCGTTCGACCTGCACGGCACCCTGGCGCTGAGCATGGAACGCAGCAAGGAAGGCGAGACCCTGCAACGGGTc                                                                                            >  2:37511/1‑149 (MQ=255)
                                                   agcagcagTGTGTACCTCTCGGCCAACCGTGAAGTGGGGGACAGCCAGTGGGCGGTGCAGGCGCAGCTGGTGATCCCGTTCGACCTGCACGGCACCCTGGCGCTGAGCATGGAACGCAGCAATGAAGGCGAGACCCTGCAACGGGTCaa                                                                                          >  6:120237/1‑149 (MQ=255)
                                                     cagcagTGTGTACCTCTCGGCCAACCGTGAAGTGGGGGACAGCCAGTGGGCGGTGCAGGCGCAGCTGGTGATCCCGTTCGACCTGCACGGCACCCTGGCGCTGAGCATGGAACGCAGCAATGAAGGCGAGACCCTGCAACGGGTCAACt                                                                                        <  5:251249/149‑1 (MQ=255)
                                                      agcagTGTGTACCTCTCGGCCAACCGTGAAGTGGGGGACAGCCAGTGGGCGGTGCAGGCGCAGCTGGTGATCCCGTTCGACCTGCACGGCACCCTGGCGCTGAGCATGGAACGCAGCAATGAAGGCGAGACCCTGCAACGGGTCAACTa                                                                                       <  3:198189/149‑1 (MQ=255)
                                                         agTGTGTACCTCTCGGCCAACCGTGAAGTGGGGGACAGCCAGTGGGCGGTGCAGGCGCAGCTGGTGATCCCGTTCGACCTGCACGGCACCCTGGCGCTGAGCATGGAACGCAGCAATGAAGGCGAGACCCTGCAACGGGTCAACTACAg                                                                                    >  2:228937/1‑149 (MQ=255)
                                                                aCCTCTCGGCCATCCGTGAAGTGGGGGACAGCCAGTGGGCGGTGCAGGCGCAGCTGGTGATCCCGTTCGACCTGCACGGCACCCTGGCGCTGAGCATGGAACGCAGCAATGAAGGCGAGACCCTGCAACGGGTCAACTACAGCCGTGc                                                                              <  3:230991/148‑1 (MQ=255)
                                                                 ccTCTCGGCCAACCGTGAAGTGGGGGACAGCCAGTGGGCGGTGCAGGCGCAGCTGGTGATCCCGTTCGACCTGCACGGCACCCTGGCGCTGAGCATGGAACGCAGCAATGAAGGCGAGACCCTGCAACGGGTCAACTACAGCCGTGCgg                                                                            <  5:325302/149‑1 (MQ=255)
                                                                  ctctCGGCCAACCGTGAAGTGGGGGACAGCCAGTGGGCGGTGCAGGCGCAGCTGGTGATCCCGTTCGACCTGCACGGCACCCTGGCGCTGAGCATGGAACGCAGCAATGAAGGCGAGACCCTGCAACGGGTCAACTACAGCCGTGCGGt                                                                           >  3:216943/1‑149 (MQ=255)
                                                                  ctctCGGCCAACCGTGAAGTGGGGGACAGCCAGTGGGCGGTGCAGGCGCAGCTGGTGATCCCGTTCGACCTGCACGGCACCCTGGCGCTGAGCATGGAACGCAGCAATGAAGGCGAGACCCTGCAACGGGTCAACTACAGCCGTGCGGt                                                                           <  3:374878/149‑1 (MQ=255)
                                                                  ctctCGGCCAACCGTGAAGTGGGGGACAGCCAGTGGGCGGTGCAGGCGCAGCTGGTGATCCCGTTCGACCTGCACGGCACCCTGGCGCTGAGCATGGAACGCAGCAATGAAGGCGAGACCCTGCAACGGGTCAACTACAGCCGTGCGGt                                                                           >  5:57318/1‑149 (MQ=255)
                                                                        gCCAACCGTGAAGTGGGGGACAGCCAGTGGGCGGTGCAGGCGCAGCTGGTGATCCCGTTCGACCTGCACGGCACCCTGGCGCTGAGCATGGAACGCAGCAATGAAGGCGAGACCCTGCAACGGGTCAACTACAGCCGTGCGGTGCCAGc                                                                     >  2:8163/1‑149 (MQ=255)
                                                                         ccAACCGTGAAGTGGGGGACAGCCAGATGGGCGGTGCAGGCGCAGCTGGTGATCCCGTTCGACCTGCACGGCACCCTGGCGCTGAGCATGGAACGCAGCAATGAAGGCGAGACCCTGCAACGGGTCAACTACAGCCGTGCGGTGCCAGc                                                                     >  1:4897/1‑149 (MQ=255)
                                                                         ccAACCGTGAAGTGGGGGACAGCCAGTGGGCGGTACAGGCGCAGCTGGTGATCCCGTTCGACCTGCACGGCACCCTGGCGCTGAGCATGGAACGCAGCAATGAAGGCGAGACCCTGCAACGGGTCAACTACAGCCGTGCGGTGCCAGcc                                                                    >  8:32573/1‑149 (MQ=255)
                                                                          cAACCGTGAAGTGGGGGACAGCCAGTGGGCGGTGCAGGCGCAGCTGGTGATCCCGTTCGACCTGCACGGCACCCTGGCGCTGAGCATGGAACGCAGCAATGAAGGCGAGACCCTGCAACGGGTCAACTACAGCCGTGCGGTGCCAGCCg                                                                   <  5:120237/149‑1 (MQ=255)
                                                                           aaCCGTGAAGTGGGGGACAGCCAGTGGGCGGTGCAGGCGCAGCTGGTGATCCCGTTCGACCTGCACGGCACCCTGGCGCTGAGCATGGAACGCAGCAATGAAGGCGAGACCCTGCAACGGGTCAACTACAGCCGTGCGGTGCCAGCCgg                                                                  <  4:236583/149‑1 (MQ=255)
                                                                           aaCCGTGAAGTGGGGGACAGCCAGTGGGCGGTGCAGGCGCAGCTGGTGATCCCGTTCGACCTGCACGGCACCCTGGCGCTGAGCATGGAACGCAGCAATGAAGGCGAGACCCTGCAACGGGTCAACTACAGCCGTGCGGTGCCAGCCgg                                                                  >  5:371650/1‑149 (MQ=255)
                                                                            aCCGTGAAGTGGGGGACAGCCAGTGGGCGGTGCAGGCGCAGCTGGTGATCCCGTTCGACCTGCACGGCACCCTGGCGCTGAGCATGGAACGCAGCAATGAAGGCGAGACCCTGCAACGGGTCAACTACAGCCGTGCGGTGCCAGCCGgt                                                                 <  5:107687/149‑1 (MQ=255)
                                                                            aCCGTGAAGTGGGGGACAGCCAGTGGGCGGTGCAGGCGCAGCTGGTGATCCCGTTCGACCTGCACGGCACCCTGGCGCTGAGCATGGAACGCAGCAATGAAGGCGAGACCCTGCAACGGGTCAACTACAGCCGTGCGGTGCCAGCCGgt                                                                 >  5:368382/1‑149 (MQ=255)
                                                                               gTGAAGTGGGGGACAGCCAGTGGGCGGTGCAGGCGCAGCTGGTGATCCCGTTCGACCTGCACGGCACCCTGGCGCTGAGCATGGAACGCAGCAATGAAGGCGAGACCCTGCAACGGGTCAACTACAGCCGTGCGGTGCCAGCCGGTGTc                                                              <  6:368382/149‑1 (MQ=255)
                                                                                         ggACAGCCAGTGGGCGGTGCAGGCGCAGCTGGTGATCCCGTTCGACCTGCACGGCACCCTGGCGCTGAGCATGGAACGCAGCAATGAAGGCGAGACCCTGCAACGGGTCAACTACAGCCGTGCGGTGCCAGCCGgtgt                                                               <  3:229871/138‑1 (MQ=255)
                                                                                         ggACAGCCAGTGGGCGGTGCAGGCGCAGCTGGTGATCCCGTTCGACCTGCACGGCACCCTGGCGCTGAGCATGGAACGCAGCAATGAAGGCGAGACCCTGCAACGGGTCAACTACAGCCGTGCGGTGCCAGCCGgtgt                                                               >  4:229871/1‑138 (MQ=255)
                                                                                         ggACAGCCAGTGGGCGGTGCAGGCGCAGCTGGTGATCCCGTTCGACCTGCACGGCACCCTGGCGCTGAGCATGGAACGCAGCAATGAAGGCGAGACCCTGCAACGGGTCAACTACAGCCGTGCGGTGCCAGCCGGTGTCGGCGTCGGtt                                                    <  4:17186/149‑1 (MQ=255)
                                                                                         ggACAGCCAGTGGGCGGTGCAGGCGCAGCTGGTGATCCCGTTCGACCTGCACGGCACCCTGGCGCTGAGCATGGAACGCAGCAATGAAGGCGAGACCCTGCAACGGGTCAACTACAGCCGTGCGGTGCCAGCCGGTGTCGGCGTCGGt                                                     >  3:17186/1‑148 (MQ=255)
                                                                                            cAGCCAGTGGGCGGTGCAGGCGCAGCTGGTGATCCCGTTCGACCTGCACGGCACCctggctgtcccccacttcacggttggccgagaggtacacactgctgctgccccacagcggcttgctgtagctcaggttgatcaaccgggtacgc                                                  <  6:167447‑M2/149‑95 (MQ=255)
                                                                                              gCCAGTGGGCGGTGCAGGCGCAGCTGGTGATCCCGTTCGACCTGCACGGCACCCTGGCGCTGAGCATGGAACGCAGCAATGAAGGCGAGACCCTGCAACGGGTCAACTACAGCCGTGCGGTGCCAGCCGGTGTCGGCGTCGGTTACAAc                                               <  6:57318/149‑1 (MQ=255)
                                                                                               ccAGTGGGCGGTGCAGGCGCAGCTGGTGATCCCGTTCGACCTGCACGGCACCctggctgtcccccacttcacggttgg                                                                                                                      >  5:367160‑M2/1‑52 (MQ=255)
                                                                                               ccAGTGGGCGGTGCAGGCGCAGCTGGTGATCCCGTTCGACCTGCACGGCACCctggctgtcccccacttcacggttgg                                                                                                                      <  6:367160‑M2/78‑27 (MQ=255)
                                                                                                 aGTGGGCGGTGCAGGCGCAGCTGGTGATCCCGTTCGACCTGCACGGCACCACTGGCGCTGAGCATGGAACGCAGCAATGAAGGCGAGACCCTGCAACGGGTCAACTACAGCCGTGCGGTGCCAGCCGGTGTCGGCGTCGGTTACAACCt                                             >  1:290567/1‑149 (MQ=255)
                                                                                                 aGTGGGCGGTGCAGGCGCAGCTGGTGATCCCGTTCGACCTGCACGGCACCCTGGCGCTGAGCATGGAACGCAGCAATGAAGGCGAGACCCTGCAACGGGTCAACTACAGCCGTGCGGTGCCAGCCGGTGTCGGCGTCGGTTACAACCTg                                            <  6:163896/149‑1 (MQ=255)
                                                                                                  gTGGGCGGTGCAGGCGCAGCTGGTGATCCCGTTCGACCTGCACGGCACCCTGGCGCTGAGCATGGAACGCAGCAATGAAGGCGAGACCCTGCAACGGGTCAACTACAGCCGTGCGGTGCCAGCCGGTGTCGGCGTCGGTTACAACCTgg                                           >  5:363489/1‑149 (MQ=255)
                                                                                                       gCGGTGCAGGCGCAGCTGGTGATCCCGTTCGACCTGCACCGCCCActggctgtcccccacttcacggttggccgagaggtacacactgctgctgccccacagcggcttgctgtagctcaggttgatcaaccgggtacgcgtaccgtcac                                        <  6:101210‑M2/149‑105 (MQ=255)
                                                                                                               ggCGCAGCTGGTGATCCCGTTCGACCTGCACGGCACCCTGGCGCTGAGCATGGAACGCAGCAATGAAGGCGAGACCCTGCAACGGGTCAACTACAGCCGTGCGGTGCCAGCCGGTGTCGGCGTCGGTTACAACCTGGGCTATGCCgcag                               >  8:10497/1‑149 (MQ=255)
                                                                                                                    aGCTGGTGATCCCGTTCGACCTGCACGGCACCCTGGCGCTGAGCATGGAACGCAGCAATGAAGGCGAGACCCTGCAACGGGTCAACTACAGCCGTGCGGTGCCAGCCGGTGTCGGCGTCGGTTACAACCTGGGCTATGCCGCAGGCAGc                          <  7:235433/149‑1 (MQ=255)
                                                                                                                       tGGTGATCCCGTTCGACCTGCACGGCACCCTGGCGCTGAGCATGGAACGCAGCAATGAAGGCGAGACCCTGCAACGGGTCAACTACAGCCGTGCGGTGCCAGCCGGTGTCGGCGTCGGTTACAACCTGGGCTATGCCGCAGGCAGCGAc                       >  1:177884/1‑149 (MQ=255)
                                                                                                                         gTGATCCCGTTCGACCTGCACGGCACCCTGGCGCTGAGCATGGAACGCAGCAATGAAGGCGAGACCCTGCAACGGGTCAACTACAGCCGTGCGGTg                                                                          <  7:167668/96‑1 (MQ=255)
                                                                                                                         gTGATCCCGTTCGACCTGCACGGCACCCTGGCGCTGAGCATGGAACGCAGCAATGAAGGCGAGACCCTGCAACGGGTCAACTACAGCCGTGCGGTg                                                                          >  8:167668/1‑96 (MQ=255)
                                                                                                                         gTGATCCCGTTCGACCTGCACGGCACCCTGGCGCTGAGCATGGAACGCAGCAATGAAGGCGAGACCCTGCAACGGGTCAACTACAGCCGTGCGGTGCCAGCCGGTGTCGGCGTCGGTTACAACCTGGGCTATGCCGCAGGCAGCGACCg                     <  2:290567/149‑1 (MQ=255)
                                                                                                                           gATCCCGTTCGACCTGCACGGCACCCTGGCGCTGAGCATGGAACGCAGCAATGAAGGCGAGACCCTGCAACGGGTCAACTACAGCCGTGCGGTGCCAGCCGGTGTCGGCGTCGGTTACAACCTCGGCTATGCCGCAGGCAGCGACCGt                    >  6:142829/1‑148 (MQ=255)
                                                                                                                            aTCCCGTTCGACCTGCACGGCACCCTGGCGCTGAGCATGGAACGCAGCAATGAAGGCGAGACCCTGCAACGGGTCAACTACAGCCGTGCGGTGCCAGCCGGTGTCGGCGTCGGTTACAACCTGGGCTATGCCGCAGGCAGCGACCGTGa                  <  2:152688/149‑1 (MQ=255)
                                                                                                                             tCCCGTTCGACCTGCACGGCACCCTGGCGCTGAGCATGGAACGCAGCAATGAAGGCGAGACCCTGCAACGGGTCAACTACAGCCGTGCGGTGCCAGCCGGTGTCGGCGTCGGTTACAACCTGGGCTATGCCGCAGGCAGCGACCGTGAt                 <  2:4897/149‑1 (MQ=255)
                                                                                                                              cccGTTCGACCTGCACGGCACCCTGGCGCTGAACATGGAACGCAGCAATGAAGGCGAGACCCTGCAACGGGTCAACTACAGCCGTGCGGTGCCAGCCGGTGTCGGCGTCGGTTACAACCTGGGCTATGCCGCAGGCAGCGACCGTGATg                >  1:242691/1‑149 (MQ=255)
                                                                                                                              cccGTTCGACCTGCACGGCACCCTGGCGCTGAACATGGAACGCAGCAATGAAGGCGAGACCCTGCAACGGGTCAACTACAGCCGTGCGGTGCCAGCCGGTGTCGGCGTCGGTTACAACCTGGGCTATGCCGCAGGCAGCGACCGTGATg                >  1:237162/1‑149 (MQ=255)
                                                                                                                                         tGCACGGCACCCTGGCGCTGAGCATGGAACGCAGCAATGAAGGCGAGACCCTGCAACGGGTCAACTACAGCCGTGCGGTGCCAGCCGGTGTCGGCGTCGGTTACAACCTGGGCTATGCCGCAGGCAGCGACCGTGATGCCTATCGCCAg     >  6:375983/1‑149 (MQ=255)
                                                                                                                                            aCGCCACCCCGCCGCTGAGCAGGGAACGCAGCAATGCACGCGAGACCCTGCCACGGCTCAACTACCGCCGTGCGGTGCCAGCCGGTGTCGGCGTCGGTTACAACCTGCGCTATGCCGCACGCAGCGACCGTGATGCCTATCGCCAGGcc  <  4:216943/149‑1 (MQ=255)
                                                                                                                                                   |                                                                                                                                              
GGTACGCGTACCCGGTTGATCAACCTGAGCTACAGCAAGCCGCTGTGGGGCAGCAGCAGTGTGTACCTCTCGGCCAACCGTGAAGTGGGGGACAGCCAGTGGGCGGTGCAGGCGCAGCTGGTGATCCCGTTCGACCTGCACGGCACCCTGGCGCTGAGCATGGAACGCAGCAATGAAGGCGAGACCCTGCAACGGGTCAACTACAGCCGTGCGGTGCCAGCCGGTGTCGGCGTCGGTTACAACCTGGGCTATGCCGCAGGCAGCGACCGTGATGCCTATCGCCAGGCC  >  NC_002947/2695186‑2695473

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.