New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | = 2695284 | 57 (0.920) | 4 (0.070) | 4/256 | NT | 7.0% | coding (1575/2394 nt) | PP_2362 | usher protein |
? | NC_002947 | = 2695332 | 51 (0.860) | coding (1623/2394 nt) | PP_2362 | usher protein |
GGTACGCGTACCCGGTTGATCAACCTGAGCTACAGCAAGCCGCTGTGGGGCAGCAGCAGTGTGTACCTCTCGGCCAACCGTGAAGTGGGGGACAGCCAG‑TGGGCGGTGCAGGCGCAGCTGGTGATCCCGTTCGACCTGCACGGCACC‑CTGGCGCTGAGCATGGAACGCAGCAATGAAGGCGAGACCCTGCAACGGGTCAACTACAGCCGTGCGGTGCCAGCCGGTGTCGGCGTCGGTTACAACCTGGGCTATGCCGCAGGCAGCGACCGTGATGCCTATCGCCAGGCC > NC_002947/2695186‑2695473 | ggTACGCGTACCCGGTTGATCAACCTGAGCTTCAGCAAGCCGCTGTGGGGCAGCAGCAGTGTGTACCTCTCGGCCAACCGTGAAGTGGGGGACAGCCAG‑TGGGCGGTGCAGGCGCAGCTGGTGATCCCGTTCGACCTGCACGGCACCct < 1:152688‑M2/149‑3 (MQ=255) tACGCGTACCCGGTTGATCAACCTGAGCTACAGCAAGCCGCTGTGGGGCAGCAGCAGTGTGTACCTCTCGGCCAACCGTGAAGTGGGGGACAGCCAG‑TGGGCGGTGCAGGCGCAGCTGGTGATCCCGTTCGACCTGCACGGCACCctgg < 3:185883‑M2/149‑5 (MQ=255) gcgTACCCGGTTGATCAACCTGAGCTACAGCAAGCCGCTGTGGGGCAGCAGCAGTGTGTACCTCTCGGCCAACCGTGAAGTGGGGGACAGCCAG‑TGGGCGGTGCAGGCGCAGCTGGTGATCCCGTTCGACCTGCACGGCACC‑CTGgcgc > 8:235433/1‑149 (MQ=255) cccGGTTGATCAACCTGAGCTAGAGCAAGCCGCTGTGGGGAAGCAGCAGTGTGTACCTATCGGCCAACCGTGAAGTGGGGGACAGCCAG‑TGGGCGGTGCAGGCGCAGCTGGTGATCCCGTTCGACCTGCACGGCACC‑CTGGCGCTGat < 3:331540/148‑2 (MQ=255) ggTTGATCAACCTGAGCTACAGCAAGCCGCTGTGGGGCAGCAGCAGTGTGTACCTCTCGGCCAACCGTGAAGTGGGGGACAGCCAG‑TGGGCGGTGCAGGCGCAGCTGGTGATCCCGTTCGACCTGCACGGCACC‑CTGGCGCTGAGCATg < 4:252931/149‑1 (MQ=255) gATCAACCTGAGCTACAGCAAGCCGCTGTGGGGCAGCAGCAGTGTGTACCTCTCGGCCAACCGTGAAGTGGGGGACAGCCAG‑TGGGCGGTGCAGGCGCAGCTGGTGATCCCGTTCGACCTGCACGGCACC‑CTGGCGCTGAGCATGGaa < 3:250314/148‑1 (MQ=255) tCAACCTGAGCTACAGCAAGCCGCTGTGGGGCAGCAGCAGTGTGTACCTCTCGGCCAACCGTGAAGTGGGGGACAGCCAG‑TGGGCGGTGCAGGCGCAGCTGGTGATCCCGTTCGACCTGCACGGCACC‑CTGGCGCTGAGCATGGAACgc < 6:4338/149‑1 (MQ=255) aGCTACAGCAAGCCGCTGTGGGGCAGCAGCAGTGTGTACCTCTCGGCCAACCGTGAAGTGGGGGACAGCCAG‑TGGGCGGTGCAGGCGCAGCTGGTGATCCCGTTCGACCTGCACGGCACC‑CTGGCGCTGAGCATGGAACGCAGCAATg > 3:236583/1‑148 (MQ=255) gCTACAGCAAGCCGCTGTGGGGCAGCAGCAGTGTGTACCTCTCGGCCAACCGTGAAGTGGGGGACAGCCAG‑TGGGCGGTGCAGGCGCAGCTGGTGATCCCGTTCGACCTGCACGGCACC‑CTGGCGCTGAGCAGGGAACGCAGCAATg > 7:284021/1‑147 (MQ=255) tACAGCAAGCCGCTGTGGGGCAGCAGCAGTGTGTACCTCTCGGCCAACCGTGAAGTGGGGGACAGCCAG‑TGGGCGGTGCAGGCGCAGCTGGTGATCCCGTTCGACCTGCACGGCACC‑CTGGCGCTGAGCATGGAACGCAGCAATGAAgg > 5:50/1‑149 (MQ=255) tACAGCAAGCCGCTGTGGGGCAGCAGCAGTGTGTACCTCTCGGCCAACCGTGAAGTGGGGGACAGCCAG‑TGGGCGGTGCAGGCGCAGCTGGTGATCCCGTTCGACCTGCACGGCACC‑CTGGCGCTGAGCATGGAACGCAGCAATGAAgg > 6:92829/1‑149 (MQ=255) cAGCAAGCCGCTGTGGGGCAGCAGCAGTGTGTACCTCTCGGCCAACCGTGAAGTGGGGGACAGCCAG‑TGGGCGGTGCAGGCGCAGCTGGTGATCCCGTTCGACCTGCACGGCACC‑CTGGCGCTGAGCATGGAACGCAGCAATGAAGGc < 8:284021/148‑1 (MQ=255) aGCAAGCCGCTGTGGGGCAGCAGCAGTGTGTACCTCTCGGCCAACCGTGAAGTGGGGGACAGCCAG‑TGGGCGGTGCAGGCGCAGCTGGTGATCCCGTTCGACCTGCACGGCACC‑CTGGCGCTGAGCATGGAACGCAGCAATGAAGGc > 6:325302/1‑147 (MQ=255) gggCAGCAGCAGTGTGTACCTCTCGGCCAACCGTGAAGTGGGGGACAGCCAG‑TGGGCGGTGCAGGCGCAGCTGGTGATCCCGTTCGACCTGCACGGCACC‑CTGGCGCTGAGCATGGAACGCAGCAATGAAGGCGAGACCCTGCAACgg < 6:313268/148‑1 (MQ=255) ggCAGGAGCAGTGTGTACCTCTCGGCCAACCGTGAAGTGGGGGACAGCCAG‑TGAGCGGTGCAGGCGCAGCTGGTGATCCCGTTCGACCTGCACGGCACC‑CTGGCGCTGAGCATGGAACGCAGCAATGAAGGCGAGACCCTGCAACGGGt < 3:45691/149‑1 (MQ=255) gcagcagcaGTGTGTACCTCTCGGCCAACCGTGAAGTGGGGGCCAGCCAG‑TGGGCGGTGCAGGCGCAGCTGGTGATCCCGTTCGACCTGCACGGCACC‑CTGGCGCTGAGCATGGAACGCAGCAAGGAAGGCGAGACCCTGCAACGGGTc > 2:37511/1‑149 (MQ=255) agcagcagTGTGTACCTCTCGGCCAACCGTGAAGTGGGGGACAGCCAG‑TGGGCGGTGCAGGCGCAGCTGGTGATCCCGTTCGACCTGCACGGCACC‑CTGGCGCTGAGCATGGAACGCAGCAATGAAGGCGAGACCCTGCAACGGGTCaa > 6:120237/1‑149 (MQ=255) cagcagTGTGTACCTCTCGGCCAACCGTGAAGTGGGGGACAGCCAG‑TGGGCGGTGCAGGCGCAGCTGGTGATCCCGTTCGACCTGCACGGCACC‑CTGGCGCTGAGCATGGAACGCAGCAATGAAGGCGAGACCCTGCAACGGGTCAACt < 5:251249/149‑1 (MQ=255) agcagTGTGTACCTCTCGGCCAACCGTGAAGTGGGGGACAGCCAG‑TGGGCGGTGCAGGCGCAGCTGGTGATCCCGTTCGACCTGCACGGCACC‑CTGGCGCTGAGCATGGAACGCAGCAATGAAGGCGAGACCCTGCAACGGGTCAACTa < 3:198189/149‑1 (MQ=255) agTGTGTACCTCTCGGCCAACCGTGAAGTGGGGGACAGCCAG‑TGGGCGGTGCAGGCGCAGCTGGTGATCCCGTTCGACCTGCACGGCACC‑CTGGCGCTGAGCATGGAACGCAGCAATGAAGGCGAGACCCTGCAACGGGTCAACTACAg > 2:228937/1‑149 (MQ=255) aCCTCTCGGCCATCCGTGAAGTGGGGGACAGCCAG‑TGGGCGGTGCAGGCGCAGCTGGTGATCCCGTTCGACCTGCACGGCACC‑CTGGCGCTGAGCATGGAACGCAGCAATGAAGGCGAGACCCTGCAACGGGTCAACTACAGCCGTGc < 3:230991/148‑1 (MQ=255) ccTCTCGGCCAACCGTGAAGTGGGGGACAGCCAG‑TGGGCGGTGCAGGCGCAGCTGGTGATCCCGTTCGACCTGCACGGCACC‑CTGGCGCTGAGCATGGAACGCAGCAATGAAGGCGAGACCCTGCAACGGGTCAACTACAGCCGTGCgg < 5:325302/149‑1 (MQ=255) ctctCGGCCAACCGTGAAGTGGGGGACAGCCAG‑TGGGCGGTGCAGGCGCAGCTGGTGATCCCGTTCGACCTGCACGGCACC‑CTGGCGCTGAGCATGGAACGCAGCAATGAAGGCGAGACCCTGCAACGGGTCAACTACAGCCGTGCGGt > 3:216943/1‑149 (MQ=255) ctctCGGCCAACCGTGAAGTGGGGGACAGCCAG‑TGGGCGGTGCAGGCGCAGCTGGTGATCCCGTTCGACCTGCACGGCACC‑CTGGCGCTGAGCATGGAACGCAGCAATGAAGGCGAGACCCTGCAACGGGTCAACTACAGCCGTGCGGt < 3:374878/149‑1 (MQ=255) ctctCGGCCAACCGTGAAGTGGGGGACAGCCAG‑TGGGCGGTGCAGGCGCAGCTGGTGATCCCGTTCGACCTGCACGGCACC‑CTGGCGCTGAGCATGGAACGCAGCAATGAAGGCGAGACCCTGCAACGGGTCAACTACAGCCGTGCGGt > 5:57318/1‑149 (MQ=255) gCCAACCGTGAAGTGGGGGACAGCCAG‑TGGGCGGTGCAGGCGCAGCTGGTGATCCCGTTCGACCTGCACGGCACC‑CTGGCGCTGAGCATGGAACGCAGCAATGAAGGCGAGACCCTGCAACGGGTCAACTACAGCCGTGCGGTGCCAGc > 2:8163/1‑149 (MQ=255) ccAACCGTGAAGTGGGGGACAGCCAGATGGGCGGTGCAGGCGCAGCTGGTGATCCCGTTCGACCTGCACGGCACC‑CTGGCGCTGAGCATGGAACGCAGCAATGAAGGCGAGACCCTGCAACGGGTCAACTACAGCCGTGCGGTGCCAGc > 1:4897/1‑149 (MQ=255) ccAACCGTGAAGTGGGGGACAGCCAG‑TGGGCGGTACAGGCGCAGCTGGTGATCCCGTTCGACCTGCACGGCACC‑CTGGCGCTGAGCATGGAACGCAGCAATGAAGGCGAGACCCTGCAACGGGTCAACTACAGCCGTGCGGTGCCAGcc > 8:32573/1‑149 (MQ=255) cAACCGTGAAGTGGGGGACAGCCAG‑TGGGCGGTGCAGGCGCAGCTGGTGATCCCGTTCGACCTGCACGGCACC‑CTGGCGCTGAGCATGGAACGCAGCAATGAAGGCGAGACCCTGCAACGGGTCAACTACAGCCGTGCGGTGCCAGCCg < 5:120237/149‑1 (MQ=255) aaCCGTGAAGTGGGGGACAGCCAG‑TGGGCGGTGCAGGCGCAGCTGGTGATCCCGTTCGACCTGCACGGCACC‑CTGGCGCTGAGCATGGAACGCAGCAATGAAGGCGAGACCCTGCAACGGGTCAACTACAGCCGTGCGGTGCCAGCCgg < 4:236583/149‑1 (MQ=255) aaCCGTGAAGTGGGGGACAGCCAG‑TGGGCGGTGCAGGCGCAGCTGGTGATCCCGTTCGACCTGCACGGCACC‑CTGGCGCTGAGCATGGAACGCAGCAATGAAGGCGAGACCCTGCAACGGGTCAACTACAGCCGTGCGGTGCCAGCCgg > 5:371650/1‑149 (MQ=255) aCCGTGAAGTGGGGGACAGCCAG‑TGGGCGGTGCAGGCGCAGCTGGTGATCCCGTTCGACCTGCACGGCACC‑CTGGCGCTGAGCATGGAACGCAGCAATGAAGGCGAGACCCTGCAACGGGTCAACTACAGCCGTGCGGTGCCAGCCGgt < 5:107687/149‑1 (MQ=255) aCCGTGAAGTGGGGGACAGCCAG‑TGGGCGGTGCAGGCGCAGCTGGTGATCCCGTTCGACCTGCACGGCACC‑CTGGCGCTGAGCATGGAACGCAGCAATGAAGGCGAGACCCTGCAACGGGTCAACTACAGCCGTGCGGTGCCAGCCGgt > 5:368382/1‑149 (MQ=255) gTGAAGTGGGGGACAGCCAG‑TGGGCGGTGCAGGCGCAGCTGGTGATCCCGTTCGACCTGCACGGCACC‑CTGGCGCTGAGCATGGAACGCAGCAATGAAGGCGAGACCCTGCAACGGGTCAACTACAGCCGTGCGGTGCCAGCCGGTGTc < 6:368382/149‑1 (MQ=255) ggACAGCCAG‑TGGGCGGTGCAGGCGCAGCTGGTGATCCCGTTCGACCTGCACGGCACC‑CTGGCGCTGAGCATGGAACGCAGCAATGAAGGCGAGACCCTGCAACGGGTCAACTACAGCCGTGCGGTGCCAGCCGgtgt < 3:229871/138‑1 (MQ=255) ggACAGCCAG‑TGGGCGGTGCAGGCGCAGCTGGTGATCCCGTTCGACCTGCACGGCACC‑CTGGCGCTGAGCATGGAACGCAGCAATGAAGGCGAGACCCTGCAACGGGTCAACTACAGCCGTGCGGTGCCAGCCGgtgt > 4:229871/1‑138 (MQ=255) ggACAGCCAG‑TGGGCGGTGCAGGCGCAGCTGGTGATCCCGTTCGACCTGCACGGCACC‑CTGGCGCTGAGCATGGAACGCAGCAATGAAGGCGAGACCCTGCAACGGGTCAACTACAGCCGTGCGGTGCCAGCCGGTGTCGGCGTCGGtt < 4:17186/149‑1 (MQ=255) ggACAGCCAG‑TGGGCGGTGCAGGCGCAGCTGGTGATCCCGTTCGACCTGCACGGCACC‑CTGGCGCTGAGCATGGAACGCAGCAATGAAGGCGAGACCCTGCAACGGGTCAACTACAGCCGTGCGGTGCCAGCCGGTGTCGGCGTCGGt > 3:17186/1‑148 (MQ=255) cAGCCAG‑TGGGCGGTGCAGGCGCAGCTGGTGATCCCGTTCGACCTGCACGGCACCctggctgtcccccacttcacggttggccgagaggtacacactgctgctgccccacagcggcttgctgtagctcaggttgatcaaccgggtacgc < 6:167447‑M2/149‑95 (MQ=255) gCCAG‑TGGGCGGTGCAGGCGCAGCTGGTGATCCCGTTCGACCTGCACGGCACC‑CTGGCGCTGAGCATGGAACGCAGCAATGAAGGCGAGACCCTGCAACGGGTCAACTACAGCCGTGCGGTGCCAGCCGGTGTCGGCGTCGGTTACAAc < 6:57318/149‑1 (MQ=255) ccAG‑TGGGCGGTGCAGGCGCAGCTGGTGATCCCGTTCGACCTGCACGGCACCctggctgtcccccacttcacggttgg > 5:367160‑M2/1‑52 (MQ=255) ccAG‑TGGGCGGTGCAGGCGCAGCTGGTGATCCCGTTCGACCTGCACGGCACCctggctgtcccccacttcacggttgg < 6:367160‑M2/78‑27 (MQ=255) aG‑TGGGCGGTGCAGGCGCAGCTGGTGATCCCGTTCGACCTGCACGGCACCACTGGCGCTGAGCATGGAACGCAGCAATGAAGGCGAGACCCTGCAACGGGTCAACTACAGCCGTGCGGTGCCAGCCGGTGTCGGCGTCGGTTACAACCt > 1:290567/1‑149 (MQ=255) aG‑TGGGCGGTGCAGGCGCAGCTGGTGATCCCGTTCGACCTGCACGGCACC‑CTGGCGCTGAGCATGGAACGCAGCAATGAAGGCGAGACCCTGCAACGGGTCAACTACAGCCGTGCGGTGCCAGCCGGTGTCGGCGTCGGTTACAACCTg < 6:163896/149‑1 (MQ=255) g‑TGGGCGGTGCAGGCGCAGCTGGTGATCCCGTTCGACCTGCACGGCACC‑CTGGCGCTGAGCATGGAACGCAGCAATGAAGGCGAGACCCTGCAACGGGTCAACTACAGCCGTGCGGTGCCAGCCGGTGTCGGCGTCGGTTACAACCTgg > 5:363489/1‑149 (MQ=255) gCGGTGCAGGCGCAGCTGGTGATCCCGTTCGACCTGCACCGCCCActggctgtcccccacttcacggttggccgagaggtacacactgctgctgccccacagcggcttgctgtagctcaggttgatcaaccgggtacgcgtaccgtcac < 6:101210‑M2/149‑105 (MQ=255) ggCGCAGCTGGTGATCCCGTTCGACCTGCACGGCACC‑CTGGCGCTGAGCATGGAACGCAGCAATGAAGGCGAGACCCTGCAACGGGTCAACTACAGCCGTGCGGTGCCAGCCGGTGTCGGCGTCGGTTACAACCTGGGCTATGCCgcag > 8:10497/1‑149 (MQ=255) aGCTGGTGATCCCGTTCGACCTGCACGGCACC‑CTGGCGCTGAGCATGGAACGCAGCAATGAAGGCGAGACCCTGCAACGGGTCAACTACAGCCGTGCGGTGCCAGCCGGTGTCGGCGTCGGTTACAACCTGGGCTATGCCGCAGGCAGc < 7:235433/149‑1 (MQ=255) tGGTGATCCCGTTCGACCTGCACGGCACC‑CTGGCGCTGAGCATGGAACGCAGCAATGAAGGCGAGACCCTGCAACGGGTCAACTACAGCCGTGCGGTGCCAGCCGGTGTCGGCGTCGGTTACAACCTGGGCTATGCCGCAGGCAGCGAc > 1:177884/1‑149 (MQ=255) gTGATCCCGTTCGACCTGCACGGCACC‑CTGGCGCTGAGCATGGAACGCAGCAATGAAGGCGAGACCCTGCAACGGGTCAACTACAGCCGTGCGGTg < 7:167668/96‑1 (MQ=255) gTGATCCCGTTCGACCTGCACGGCACC‑CTGGCGCTGAGCATGGAACGCAGCAATGAAGGCGAGACCCTGCAACGGGTCAACTACAGCCGTGCGGTg > 8:167668/1‑96 (MQ=255) gTGATCCCGTTCGACCTGCACGGCACC‑CTGGCGCTGAGCATGGAACGCAGCAATGAAGGCGAGACCCTGCAACGGGTCAACTACAGCCGTGCGGTGCCAGCCGGTGTCGGCGTCGGTTACAACCTGGGCTATGCCGCAGGCAGCGACCg < 2:290567/149‑1 (MQ=255) gATCCCGTTCGACCTGCACGGCACC‑CTGGCGCTGAGCATGGAACGCAGCAATGAAGGCGAGACCCTGCAACGGGTCAACTACAGCCGTGCGGTGCCAGCCGGTGTCGGCGTCGGTTACAACCTCGGCTATGCCGCAGGCAGCGACCGt > 6:142829/1‑148 (MQ=255) aTCCCGTTCGACCTGCACGGCACC‑CTGGCGCTGAGCATGGAACGCAGCAATGAAGGCGAGACCCTGCAACGGGTCAACTACAGCCGTGCGGTGCCAGCCGGTGTCGGCGTCGGTTACAACCTGGGCTATGCCGCAGGCAGCGACCGTGa < 2:152688/149‑1 (MQ=255) tCCCGTTCGACCTGCACGGCACC‑CTGGCGCTGAGCATGGAACGCAGCAATGAAGGCGAGACCCTGCAACGGGTCAACTACAGCCGTGCGGTGCCAGCCGGTGTCGGCGTCGGTTACAACCTGGGCTATGCCGCAGGCAGCGACCGTGAt < 2:4897/149‑1 (MQ=255) cccGTTCGACCTGCACGGCACC‑CTGGCGCTGAACATGGAACGCAGCAATGAAGGCGAGACCCTGCAACGGGTCAACTACAGCCGTGCGGTGCCAGCCGGTGTCGGCGTCGGTTACAACCTGGGCTATGCCGCAGGCAGCGACCGTGATg > 1:242691/1‑149 (MQ=255) cccGTTCGACCTGCACGGCACC‑CTGGCGCTGAACATGGAACGCAGCAATGAAGGCGAGACCCTGCAACGGGTCAACTACAGCCGTGCGGTGCCAGCCGGTGTCGGCGTCGGTTACAACCTGGGCTATGCCGCAGGCAGCGACCGTGATg > 1:237162/1‑149 (MQ=255) tGCACGGCACC‑CTGGCGCTGAGCATGGAACGCAGCAATGAAGGCGAGACCCTGCAACGGGTCAACTACAGCCGTGCGGTGCCAGCCGGTGTCGGCGTCGGTTACAACCTGGGCTATGCCGCAGGCAGCGACCGTGATGCCTATCGCCAg > 6:375983/1‑149 (MQ=255) aCGCCACC‑CCGCCGCTGAGCAGGGAACGCAGCAATGCACGCGAGACCCTGCCACGGCTCAACTACCGCCGTGCGGTGCCAGCCGGTGTCGGCGTCGGTTACAACCTGCGCTATGCCGCACGCAGCGACCGTGATGCCTATCGCCAGGcc < 4:216943/149‑1 (MQ=255) | GGTACGCGTACCCGGTTGATCAACCTGAGCTACAGCAAGCCGCTGTGGGGCAGCAGCAGTGTGTACCTCTCGGCCAACCGTGAAGTGGGGGACAGCCAG‑TGGGCGGTGCAGGCGCAGCTGGTGATCCCGTTCGACCTGCACGGCACC‑CTGGCGCTGAGCATGGAACGCAGCAATGAAGGCGAGACCCTGCAACGGGTCAACTACAGCCGTGCGGTGCCAGCCGGTGTCGGCGTCGGTTACAACCTGGGCTATGCCGCAGGCAGCGACCGTGATGCCTATCGCCAGGCC > NC_002947/2695186‑2695473 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |