New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2773062 =	41 (0.660)	4 (0.070)	4/248	NT	9.5%	coding (66/1053 nt)	calA	coniferyl alcohol dehydrogenase
	?	NC_002947	2773116 =	38 (0.660)					coding (120/1053 nt)	calA	coniferyl alcohol dehydrogenase

CACCGCCGTGACCCGGCCGATGATCTCGTGGCCCGGCATCAGCGGGTACACGGCAATGCCCCATTCGTTGCGCGCCTGGTGGATGTCGGAGTGGCACACGCCGCAGTACAGGATGTCGATGGCGACGTCATCCGGGCGCGGGCTGCGGCGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/2773212‑2773062 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctgcggcgtGTGCCACTCCGACATCCACCAGGCGCGCAACGAATGGGGCATTGCCGTGTACCCGCTGATGCCGGGCCACGAGATCATCGGCCGGGTCACGGCGGTGGGCGACAAGGTCACCGCGCACAAGGTCGGTGACCTGGTGGGCGTCGGCT  >  NC_002947/2773116‑2773261                                                                                                                                                                                                                                                                                                           CACCGCCGTGACCCGGCCGATGATCTCGTGGCCCGGCATCAGCGGGTACACGGCAATGCCCCATTCGTTGCGCGCCTGGTGGATGTCGGAGTGGCACACGCCGCAGTACAGGATGTCGATGGCGACGTCATCCGGGCGCGGGCTGCGGC                                                                                                                                                      >  5:324493/1‑149                                                                                             GGCACACGCCGCAGTACAGGATGTCGATGGCGACGTCATCCGGGCGCGGGCTGCGGCGTGTGCCACTCCGACATCCACCCGGCGCGCACAGAATGGGGCATTGCCGTGTACCCGCTGATGCCGGGCCACGAGATCATCGGCCGGGTCAC                                                          >  8:65579/1‑149                                                                                               CACACGCCGCAGTACAGGATGTCGATGGCGACGTCATCCGGGCGCGGGCTGCGGCGTGTGCCACTCCGACATCCACCAGGCGCGCAACGAATGGGGCATTGCCGTGTACCCGCTGATGCCGGGCCACGAGATCATCGGCCGGGTCACGG                                                        >  4:157171/1‑149                                                                                                ACACGCCGCAGTACAGGATGTCGATGGCGACGTCATCCGGGCGCGGGCTGCGGCGTGTGCCACTCCGACATCCACCAGGCGCGCAACGAATGGGGCATTGCCGTGTACCCGCTGATGCCGGGCCACGAGATCATCGGCCGGGTCACGGC                                                       >  2:352828/1‑149                                                                                                                            GACGTCATCCGGGCGCGGGCTGCGGCGTGTGCCACTCCGACATCCACCAGGCGCGCAACGAATGGGGCATTGCCGTGTACCCGCTGATGCCGGGCCACGAGATCATCGGCCGGGTCACGGCGGTGGGCGACAAGGTCACCGCGCACAAG                           <  3:157171/149‑1                                                                                                                                                  CGGCGTGTGCCACTCCGACATCCACCAGGCGCGCAACGAATGGGGCATTGCCGTGTACCCGCTGATGCCGGGCCACGAGATCATCGGCCGGGTCACGGCGGTGGGCGACAAGGTCACCGCGCACAAGGTCGGTGACCTGGTGGGCGTCG     >  3:291427/1‑149                                                                                                                                                     CGTGTGCCACTCCGACATCCACCAGGCGCGCAACGAATGGGGCATTGCCGTGTACCCGCTGATGCCGGGCCACGAGATCATCGGCCGGGTCACGGCGGTGGGCGACAAGGTCACCGCGCACAAGGTCGGTGACCTGGTGGGCGTCGGCT  <  7:190736/149‑1                                                                                                                                                                                                                                                                                                           CACCGCCGTGACCCGGCCGATGATCTCGTGGCCCGGCATCAGCGGGTACACGGCAATGCCCCATTCGTTGCGCGCCTGGTGGATGTCGGAGTGGCACACGCCGCAGTACAGGATGTCGATGGCGACGTCATCCGGGCGCGGGCTGCGGCGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/2773212‑2773062 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctgcggcgtGTGCCACTCCGACATCCACCAGGCGCGCAACGAATGGGGCATTGCCGTGTACCCGCTGATGCCGGGCCACGAGATCATCGGCCGGGTCACGGCGGTGGGCGACAAGGTCACCGCGCACAAGGTCGGTGACCTGGTGGGCGTCGGCT  >  NC_002947/2773116‑2773261

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.