New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2773062 =	41 (0.660)	4 (0.070)	4/248	NT	9.5%	coding (66/1053 nt)	calA	coniferyl alcohol dehydrogenase
	?	NC_002947	2773116 =	38 (0.660)					coding (120/1053 nt)	calA	coniferyl alcohol dehydrogenase

GGAGAATCAGTCGTGGGCGAGGCGGCGAACGACGCGCAAAATGTGTCGCCTGAATCGTTTCACTTCACTGCGAGGCCCTGCATGTATACCGCCATCGGTTATGCCGCTCAAACCCCCACCAGCCCCCTGGCCCCCATGACGTTCCAACGCCGCAGCCCGCGCCCGGATGACGTCGCCATCGACATCCTGTACTGCGGCGTGTGCCACTCCGACATCCACCAGGCGCGCAACGAATGGGGCATTGCCGTGTACCCGCTGATGCCGGGCCACGAGATCATCGGCCGGGTCACGGCG  >  NC_002947/2772916‑2773209                                                                                                                                                   |                                                                                                                                                    agccgacgcccaccaggtcaccgaccttgtgcgcggtgaccttgtcgcccaccgccgtgacccggccgatgatctcgtggcccggcatcagcgggtacacggcaatgccccattcgttgcgcgcctggtggatgtcggagtggcacAcg                                                                                                                                                   <  7:190736‑M1/3‑1 (MQ=255)    cgacgcccaccaggtcaccgaccttgtgcgcggtgaccttgtcgcccaccgccgtgacccggccgatgatctcgtggcccggcatcagcgggtacacggcaatgccccattcgttgcgcgcctggtggatgtcggagtggcacAcgccg                                                                                                                                                >  3:291427‑M1/144‑149 (MQ=255)     aaTCAGTCGTGGGCGAGGCGGCGAACGACGCGCAAAATGTGTCGCCTGAATCGTTTCACTTCACTGCGAGGCCCTGCATGTATACCGCCATCGGTTATGCCGCTCAAACCCCCACCAGCCCCCTGGCCCCCATGACGTTCCAAcgccgc                                                                                                                                               <  5:116768/149‑1 (MQ=255)                 gCGAGGCGGCGAACGACGCGCAAAATGTGTCGCCTGAATCGTTTCACTTCACTGCGAGGCCCTGCATGTATACCGCCATCGGTTATGCCGCTCAAACCCCCACCAGCCCCCTGGCCCCCATGACGTTCCAACGCCGCAGCCCGCGCCCg                                                                                                                                   <  8:180109/149‑1 (MQ=255)                  cGAGGCGGCGAACGACGCGCAAAATGTGTCGCCTGAATCGTTTCACTTCACTGCGAGGCCCTGCATGTATACCGCCATCGGTTATGCCGCTCAGCCCCCCCCCCGCCCCCGGGGCCCCGGGCCGGTGCAGCGCCGCCGCCCGCGCCCgg                                                                                                                                  >  5:331861/1‑149 (MQ=255)                      gcggcgAACGACGCGCAAAATGTGTCGCCTGAATCGTTTCACTTCACTGCGAGGCCCTGCATGTATACCGCCATCGGTTATGCCGCTCAAACCCCCCCCAGCCCCCTGCCCCCCAGGACGGTCCAAACGCGCCGCCCGCGCCCCGGTGa                                                                                                                              >  1:281586/1‑149 (MQ=255)                      gcggcgAACGACGCGCAAAATGTGTCGCCTGAATCGTTTCACTTCACTGCGAGGCCCTGCATGTATACCGCCATCGATTATGCCGCTCAAGCCCCCCCCAGCCCCCGGGGCCCCCGGACGGTGCAACGCCGccgcccccgccccgctgg                                                                                                                              >  6:150811/1‑143 (MQ=255)                        ggcgAACGACGCGCAAAATGTGTCGCCTGAATCGTTTCGCTTCACTGCGAGGCCCTGCATGTATACCGCCATCGGTTATGCCGCGCACGGCCCCGCCCGCCCCCGGGCGCCCCGGCGGGTGCCACGGCGCAGCCCGCGCCGGGATgcgg                                                                                                                            >  4:234885/1‑146 (MQ=255)                        ggcgAACGACGCGCAAAATGTGTCGCCTGAATCGTTTCACTTCACTGCGAGGCCCTGCATGTATACCGCCATCGGTTATGCCGCTCAAACCCCCCCCAGCCCCCTGGCCCCCATGGCGGTCCAACGCCGCCGCCCGCGCCCGGATGACg                                                                                                                            >  1:170609/1‑149 (MQ=255)                        ggcgAACGACGCGCAAAATGTGTCGCCTGAATCGTTTCACTTCACTGCGAGGCCCTGCATGTATACCGCCATCGGTTATGCCGCTCAAACCCCCACCAGCCCCCGGGCCGCCAGGACGTTGCAACGCCGCCGCCCGCGCCCGGATGACg                                                                                                                            >  6:275080/1‑149 (MQ=255)                          cttgtgcgcggtgaccttgtcgcccaccgccgtgacccggccgatgatctcgtggcccggcatcagcgggtacacggcaatgccccattcgttgcgcgcctggtggatgtcggagtggcacACGCCGCAGCCCGCGCCCGGATGACGTc                                                                                                                          <  3:157171‑M1/28‑1 (MQ=255)                          cgAACGACGCGCAAAATGTGTCGCCTGAATCGTTTCACTTCACTGCGAGGCCCTGCATGTATACCGCCATCGGTTATGCCGCTCAAACCCCCACCAGCCCCCTGGCCCCCATGACGTTCCAACGCCGCAGCCCGCGCCCGGATGACGTc                                                                                                                          <  4:223324/149‑1 (MQ=255)                           gAACGACGCGCAAAATGTGTCGCCTGAATCGTTTCACTTCACTGCGAGGCCCTGCATGTATACCGCCATCGGTTATGCCGCTCAAACCCCCACCAGCCCCCTGGCCCCCATGACGTTCCAACGCCGCAGCCCGCGCCCGGATGACGTCg                                                                                                                         <  3:18668/149‑1 (MQ=255)                                            tgtCGCCTGAATCGTTTCACTTCACTGCGAGGCCCTGCATGTATACCGCCATCGGTTATGCCGCTCAAACCCCCACCAGCCCCCTGGCCCCCATGACGTTCCAACGCCGCAGCCCGCGCCCGGATGACGTCGCCATCGACATCCTGTa                                                                                                         <  3:6706/148‑1 (MQ=255)                                            tgtCGCCTGAATCGTTTCACTTCACTGCGAGGCCCTGCATGTATACCGCCATCGGTTATGCCGCTCAAACCCCCACCAGCCCCCTGGCCCCCATGACGTTCCAACGCCGCAGCCCGCGCCCGGATGACGTCGCCATCGACATCCTGTAc                                                                                                        <  1:92317/149‑1 (MQ=255)                                                gCCTGAATCGTTTCACTTCACTGCGAGGCCCTGCATGTATACCGCCATCGATTATGCCGCTCAAACCCCCACCAGCCCCCTGGCCCCCATGACGTTCCAACGCCGCAGCCCGCGCCCGGATGACGTCGCCATCGACATCCTGTACTgcg                                                                                                    <  5:150811/149‑1 (MQ=255)                                                      gccgtgacccggccgatgatctcgtggcccggcatcagcgggtacacggcaatgccccattcgttgcgcgcctggtggatgtcggagtggcacACGCCGCAGCCCGCGCCCGGATGACGTCGCCATCGACATCCTGTACTGCGGCgtgt                                                                                              >  2:352828‑M1/94‑149 (MQ=255)                                                       ccgtgacccggccgatgatctcgtggcccggcatcagcgggtacacggcaatgccccattcgttgcgcgcctggtggatgtcggagtggcacACGCCGCAGCCCGCGCCCGGATGACGTCGCCATCGACATCCTGTACTGCGGCGtgtg                                                                                             >  4:157171‑M1/93‑149 (MQ=255)                                                         gtgacccggccgatgatctcgtggcccggcatcagcgggtacacggcaatgccccattctgtgcgcgccgggtggatgtcggagtggcacACGCCGCAGCCCGCGCCCGGATGACGTCGCCATCGACATCCTGTACTGCGGCGTGTGcc                                                                                           >  8:65579‑M1/91‑149 (MQ=255)                                                             cacttcactGCGAGGCCCTGCATGTATACCGCCATCGGTTATGCCGCTCAAACCCCCACCACCCCCCTGGCCCCCATGACGTTCCAACGCCGCAGCCCCCGCCCGGATGCCGTCGCCAACGCCATCCTGTACTGCGGCGtgtgacccac                                                                                       >  3:65218/1‑143 (MQ=255)                                                                ttcactGCGAGGCCCTGCATGTATACCGCCATCGGTTATGCCGCTCAAACCCCCACCAGCCCCCAGGCCCCCAAGACCTACCAACGCCCCAGCCCGCCCCCCGAAGACGTCGCCATCCAAAACCTGAACAGAGGCGTGTGCCACACCg                                                                                     >  5:194986/1‑148 (MQ=255)                                                                  cactGCGAGGCCCTGGATGTATACCTCCATCGGTTATGCCGCTCAATCCCCCACCAGCCCCCTGGCCCCCTTGACGTTCCAACGCCTCAGCCCGCGCCCGTATGACTTCGCCATCGACATCCTg                                                                                                           <  5:62997/124‑1 (MQ=255)                                                                   actGCGAGGCCCTGCATGTATACCGCCATCGGTTATGCCGCTCAACCCCCCACCAGCCCCCAGGCCCCCCTGACGTTACAACGCCCCACCCCGCGCCCGGATGACCTCGCCATCGCCATCCAGTAATGCGGCGTGTGCCCCACCGCCaa                                                                                 >  5:247380/1‑148 (MQ=255)                                                                       cGAGGCCCTGCATGTATACCGCCATCGGTTATGCCGCTCAAACCCCCACCAGCCCCCTGGCCCCCATGACGTTCCAACGCCGCAGCCCGCGCCCGGATGACGTCGCCATCGACATCCTGTACTGCGGCGTGTGCCACTCCGACATcca                                                                              <  1:130248/148‑1 (MQ=255)                                                                                  aTGTATACCGCCATCGGTTATGCCGCTCAAACCCCCCCCCGCCCCCTGGCCCCCATGACGTTCCAACGCCGCAGCCCGCGCCCGGATGACGTCGCCCTCGCCATCCGGTACTGCGGCGTGTGCCACTCCGCCATCCACCAGGCGCGCaa                                                                  >  2:212183/1‑149 (MQ=255)                                                                                  aTGTATACCGCCATCGGTTATGCCGCTCAAACCCCCACCCGCCCCCTGGGCCCCATGACGTTCCAACGCCGCAGCCCGCGCCCGGCAGACGACGCCATCGACCTCCTGTACTGCGGCGTGTGCCCCTCCGACATCCACCAGGCGCGCaa                                                                  >  2:39328/1‑149 (MQ=255)                                                                                       taCCGCCATCGGTTATGCCGCTCAAACCCCCACCAGCCACCGGGCCCCCCAGACCTTAAAAACCCGCAGCCCCCGCCCCGATGACGGCGCCAAGGACATACAGTAATTCGGCCTGGTCCACTACGACAACCACCAGCGGCGCAACCAAt                                                             >  8:15590/1‑149 (MQ=255)                                                                                         ccGCCATCGGTTATGCCGCTCAAACCCCCACCAGCCCCCTGGCCCCCATGACGTTCCAACGCCGCAGCCCGCGCCCGGCTGCCGGTGCCCTCGACATCCTGTACTGCGGCGTGGGCCACTCCGCCATCCCCCCGGCGCGCCACGAATgg                                                           >  8:190736/1‑149 (MQ=255)                                                                                                 ggTTATGCCGCTCAAACCCCCACCAGCCCCCTGGCCCCCATGACGTTCCAACGCCGCAGCCCGCGCCCGGATGACGTCGCCATCGACATCCTGTACTGCGGCGTGTGCCACTCCGACATCCACCAGGCGCGCAACGAATGGGGCATTGc                                                   >  6:170927/1‑149 (MQ=255)                                                                                                    tATGCCGCTCAAACCCCCACCAGCCCCCTGGCCCCCATGACGTTCGAACGCCGCAGCCCGCGCCCGGATGACGTCGCCATCGACATCCTGTACTGCGGCGTGTGCCACTCCGACATCCTCCAGGCGCGCAACGAATGGGGCATTGCCgt                                                <  8:308198/149‑1 (MQ=255)                                                                                                       gCCGCTCAAACCCCCCCCAGCCCCCTGGCCCCCATGACGGTCCAACGCCGCAGCCCGCGCCCGGATGACGTCGCCATCGACATCCTGTACTGCGGCGTGTGCCACACCGCCATCCACCAGGCGCGCAACGAATGGGGGCTTGCCCTGTa                                             >  6:324493/1‑149 (MQ=255)                                                                                                              aaaCCCCCACCAGCCCCCTGGCCCCCATGACGTTCCAACGCCGCAGCCCGCGCCCGGATGACGTCGCCATCGACATCCTGTACTGCGGCGTGTGCCACTCCGACATCCACCAGGCGCGCAACGAATGGGGCATTGCCGTGTACCCGCt                                       >  3:137516/1‑148 (MQ=255)                                                                                                              aaaCCCCCACCAGCCCCCTGGCCCCCATGACGTTCCAACGCCGCAGCCCGCGCCCGGATGACGTCGCCATCGAAATCCTGTACTGCGTCGTGTGCCACTCCGACATCCACCAGGCGCGCAACGAATGGGGCATTGCCGTGTACCCGc                                        <  5:275080/147‑1 (MQ=255)                                                                                                                  ccccACCAGCCCCCTGGCCCCCATGACGTTCCAACGCCGCAGCCCGCGCCCGGATGACGTCGCCATCGACATCCTGTACTGCGGCGTGTGCCACTCCGACATCCACCAGGCGCGCAACGAATGGGGCATTGCCGTGTACCCGCTGATGc                                  >  5:295992/1‑149 (MQ=255)                                                                                                                  ccccACCAGCCCCCTGGCCCCCATGACGTTCCAACGCCGCAGCCCGCGCCCGGATGACGTCGCCATCGACATCCTGTACTGCGGCGTGTGCCACTCCGACATCCACCAGGCGCGCAACGAATGGGGCATTGCCGTGTACCCGCTGATGc                                  >  1:225522/1‑149 (MQ=255)                                                                                                                    ccaccaGCCCCCTGGCCCCCATGACGTTCCAACGCCGCAGCCCGCGCCCGGATGACGTCGCCATCGACATCCTGTACTGCGGCGTGTGCCACTCCGACATCCACCAGGCGCGCAACGAATGGGGCATTGCCGTGTACCCGCTGATGCCg                                >  4:181852/1‑149 (MQ=255)                                                                                                                    ccaccaGCCCCCTGGCCCCCATGACGTTCCAACGCCGCAGCCCGCGCCCGGATGACGTCGCCATCGACATCCTGTACTGCGGCGTGTGCCACTCCCACATCCACCAGGCGCGCAACGAATGGGGCATTGCCGTGTACCCGCTGAAGCCg                                >  4:51239/1‑149 (MQ=255)                                                                                                                     caccaGCCCCCTGGCCCCCATGACGTTCCAACGCCGCAGCCCGCGCCCGGATGACGTCGCCATCGACATCCTGTACTGCGGCGTGTGCCACTCCGACATCCACCAGGCGCGCAACGAATGGGGCATTGCCGTGTACCCGCTGATGCCgg                               <  6:247380/149‑1 (MQ=255)                                                                                                                      cccaGCCCCCTGGCCCCCATGACGTTCCAACGCCGCAGCCCGCGCCCGGATGACGTCGCCATCGACATCCTGTACTGCGGCGTGTGCCACTCCGACATCCACCAGGCGCGCAACGAATGGGGCATTGCCGTGTACCCGCTGATGCCggg                              <  2:281586/148‑1 (MQ=255)                                                                                                                      accaGCCCCCTGGCCCCCATGACGTTCCAACGCCGCAGCCCGCGCCCGGATGACGTCGCCATCGACATCCTGTACTGCGGCGTGTGCCACTCCGACATCCACCAGGCGCGCAACGAATGGGGCATTGCCGTGTACCCGCTGATGCCggg                              >  5:240205/1‑149 (MQ=255)                                                                                                                       ccaGCCCCCTGGCCCCCATGACGTTCCAACGCCGCAGCCCGCGCCCGGATGACGTCGCCATCGACATCCTGTACTGCGGCGTGTGCCACTCCGACATCCACCAGGCGCGCAACGAATGGGGCATTGCCGTGTACCCGCTGATGCCGGGc                             >  7:34438/1‑149 (MQ=255)                                                                                                                        caGCCCCCTGGCCCCCATGACGTTCCAACGCCGCAGCCCGCGACCGGATGACGTCGCCATCGACATCCTGTACTGCGGCGTGTGCCACTCCGACATCCACCAGGCGCGCAACGAATGGGGCATTGCCGTGTACCCGGTGATGCCGGGc                             >  5:221714/1‑148 (MQ=255)                                                                                                                          gCCCCCTGGCCCCCATGACGTTCCAACGCCGCAGCCCGCGCCCGGATGACGTCGCCATCGACATACTGTACTGCGGCGTGTGCCACTCCGACATCCACCAGGCGCGCAACGAATGGGGCATTGCCGTGTACCCGCTGATGCCGGGCCAc                          <  6:331861/149‑1 (MQ=255)                                                                                                                             cccTGGCCCCCATGACGTTCAAACGCCGCAGCCCGCGCCCGGATGACGTCGCCATCGACATCCTGTACTGTGGCGTGTGCCACTCCGACATCCACCAGGCGCGCAACGAATGGGGAATTGCCGTGTAACCGCTGATGCCGGGCCAc                          >  8:3187/1‑146 (MQ=255)                                                                                                                              ccTGGCCCCCATGACGTTCCAACGCCGCAGCCCGCGCCCGGATGACGTCGCCATCGACATCCTGTACTGCGGCGTGTGCCACTCCGACATCCACCAGGCGCGCAACGAATGGGGCATTGCCGTGTACCCGCTGATGCCGGGCCAc                          >  7:200867/1‑145 (MQ=255)                                                                                                                                  gCCCCCATGACGTTCCAACGCCGCAGCCCGCGCCCGGATGACGTCGCCATCGACATCCTGTACTGCGGCGTGTGCCACTCCGACATCCACCAGGCGCGCAACGAATGGGGCATTGCCGTGTACCCGCTGATGCCGGGCCACGAGatca                   <  7:15590/148‑1 (MQ=255)                                                                                                                                         tGACGTCCCAACGCCGCAGCCCGCGCCCGGATGACGTCGCCATCGACATCCTGTACTGCGGCGTGTGCCACTCCGACCTCCACCAGGCGCGCAACGAAGGGGGCATTGCCGTGTACCCGCTGATGCCGGGCCACGAGATCATCGGCCgg           <  3:234885/149‑1 (MQ=255)                                                                                                                                                 cAACGCCGCAGCCCGCGCCCGGATGACGTCGCCATCGACATCCTGTACTGCGGCGTGTGCCACTCCGACATCCACCAGGCGCGCAACGAATGGGGCATTGCCGTGTACCCGCTGATGCCGGGCCACGAGATCATCGGCCGGGTCAcgg    <  2:225522/148‑1 (MQ=255)                                                                                                                                                  aaCGCCGCAGCCCGCGCCCGGATGACGTCGCCATCGACATCCTGTACTGCGGCGTGTGCCACTCCGACATCCACCAGGCGCGCAACGAATGGCGCATTGCCGTGTACCCACTGATGCCGGGACACGAGATCAACGGCCGGGACActgcg  >  4:292736/1‑149 (MQ=255)                                                                                                                                                   |                                                                                                                                                    GGAGAATCAGTCGTGGGCGAGGCGGCGAACGACGCGCAAAATGTGTCGCCTGAATCGTTTCACTTCACTGCGAGGCCCTGCATGTATACCGCCATCGGTTATGCCGCTCAAACCCCCACCAGCCCCCTGGCCCCCATGACGTTCCAACGCCGCAGCCCGCGCCCGGATGACGTCGCCATCGACATCCTGTACTGCGGCGTGTGCCACTCCGACATCCACCAGGCGCGCAACGAATGGGGCATTGCCGTGTACCCGCTGATGCCGGGCCACGAGATCATCGGCCGGGTCACGGCG  >  NC_002947/2772916‑2773209

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.