New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2773062 =	41 (0.660)	4 (0.070)	4/248	NT	9.5%	coding (66/1053 nt)	calA	coniferyl alcohol dehydrogenase
	?	NC_002947	2773116 =	38 (0.660)					coding (120/1053 nt)	calA	coniferyl alcohol dehydrogenase

ATCGTTTCACTTCACTGCGAGGCCCTGCATGTATACCGCCATCGGTTATGCCGCTCAAACCCCCACCAGCCCCCTGGCCCCCATGACGTTCCAACGCCGCAGCCCGCGCCCGGATGACGTCGCCATCGACATCCTGTACTGCGGCGTGTGCCACTCCGACATCCACCAGGCGCGCAACGAATGGGGCATTGCCGTGTACCCGCTGATGCCGGGCCACGAGATCATCGGCCGGGTCACGGCGGTGGGCGACAAGGTCACCGCGCACAAGGTCGGTGACCTGGTGGGCGTCGGCT  >  NC_002947/2772969‑2773261                                                                                                                                                    |                                                                                                                                                  gccgtgacccggccgatgatctcgtggcccggcatcagcgggtacacggcaatgccccattcgttgcgcgcctggtggatgtcggagtggcacACGCCGCAGCCCGCGCCCGGATGACGTCGCCATCGACATCCTGTACTGCGGCgtgt                                                                                                                                                  >  2:352828‑M1/94‑149 (MQ=255)  ccgtgacccggccgatgatctcgtggcccggcatcagcgggtacacggcaatgccccattcgttgcgcgcctggtggatgtcggagtggcacACGCCGCAGCCCGCGCCCGGATGACGTCGCCATCGACATCCTGTACTGCGGCGtgtg                                                                                                                                                 >  4:157171‑M1/93‑149 (MQ=255)    gtgacccggccgatgatctcgtggcccggcatcagcgggtacacggcaatgccccattctgtgcgcgccgggtggatgtcggagtggcacACGCCGCAGCCCGCGCCCGGATGACGTCGCCATCGACATCCTGTACTGCGGCGTGTGcc                                                                                                                                               >  8:65579‑M1/91‑149 (MQ=255)        cacttcactGCGAGGCCCTGCATGTATACCGCCATCGGTTATGCCGCTCAAACCCCCACCACCCCCCTGGCCCCCATGACGTTCCAACGCCGCAGCCCCCGCCCGGATGCCGTCGCCAACGCCATCCTGTACTGCGGCGtgtgacccac                                                                                                                                           >  3:65218/1‑143 (MQ=255)           ttcactGCGAGGCCCTGCATGTATACCGCCATCGGTTATGCCGCTCAAACCCCCACCAGCCCCCAGGCCCCCAAGACCTACCAACGCCCCAGCCCGCCCCCCGAAGACGTCGCCATCCAAAACCTGAACAGAGGCGTGTGCCACACCg                                                                                                                                         >  5:194986/1‑148 (MQ=255)              actGCGAGGCCCTGCATGTATACCGCCATCGGTTATGCCGCTCAACCCCCCACCAGCCCCCAGGCCCCCCTGACGTTACAACGCCCCACCCCGCGCCCGGATGACCTCGCCATCGCCATCCAGTAATGCGGCGTGTGCCCCACCGCCaa                                                                                                                                     >  5:247380/1‑148 (MQ=255)                  cGAGGCCCTGCATGTATACCGCCATCGGTTATGCCGCTCAAACCCCCACCAGCCCCCTGGCCCCCATGACGTTCCAACGCCGCAGCCCGCGCCCGGATGACGTCGCCATCGACATCCTGTACTGCGGCGTGTGCCACTCCGACATcca                                                                                                                                  <  1:130248/148‑1 (MQ=255)                             aTGTATACCGCCATCGGTTATGCCGCTCAAACCCCCCCCCGCCCCCTGGCCCCCATGACGTTCCAACGCCGCAGCCCGCGCCCGGATGACGTCGCCCTCGCCATCCGGTACTGCGGCGTGTGCCACTCCGCCATCCACCAGGCGCGCaa                                                                                                                      >  2:212183/1‑149 (MQ=255)                             aTGTATACCGCCATCGGTTATGCCGCTCAAACCCCCACCCGCCCCCTGGGCCCCATGACGTTCCAACGCCGCAGCCCGCGCCCGGCAGACGACGCCATCGACCTCCTGTACTGCGGCGTGTGCCCCTCCGACATCCACCAGGCGCGCaa                                                                                                                      >  2:39328/1‑149 (MQ=255)                                  taCCGCCATCGGTTATGCCGCTCAAACCCCCACCAGCCACCGGGCCCCCCAGACCTTAAAAACCCGCAGCCCCCGCCCCGATGACGGCGCCAAGGACATACAGTAATTCGGCCTGGTCCACTACGACAACCACCAGCGGCGCAACCAAt                                                                                                                 >  8:15590/1‑149 (MQ=255)                                    ccGCCATCGGTTATGCCGCTCAAACCCCCACCAGCCCCCTGGCCCCCATGACGTTCCAACGCCGCAGCCCGCGCCCGGCTGCCGGTGCCCTCGACATCCTGTACTGCGGCGTGGGCCACTCCGCCATCCCCCCGGCGCGCCACGAATgg                                                                                                               >  8:190736/1‑149 (MQ=255)                                            ggTTATGCCGCTCAAACCCCCACCAGCCCCCTGGCCCCCATGACGTTCCAACGCCGCAGCCCGCGCCCGGATGACGTCGCCATCGACATCCTGTACTGCGGCGTGTGCCACTCCGACATCCACCAGGCGCGCAACGAATGGGGCATTGc                                                                                                       >  6:170927/1‑149 (MQ=255)                                               tATGCCGCTCAAACCCCCACCAGCCCCCTGGCCCCCATGACGTTCGAACGCCGCAGCCCGCGCCCGGATGACGTCGCCATCGACATCCTGTACTGCGGCGTGTGCCACTCCGACATCCTCCAGGCGCGCAACGAATGGGGCATTGCCgt                                                                                                    <  8:308198/149‑1 (MQ=255)                                                  gCCGCTCAAACCCCCCCCAGCCCCCTGGCCCCCATGACGGTCCAACGCCGCAGCCCGCGCCCGGATGACGTCGCCATCGACATCCTGTACTGCGGCGTGTGCCACACCGCCATCCACCAGGCGCGCAACGAATGGGGGCTTGCCCTGTa                                                                                                 >  6:324493/1‑149 (MQ=255)                                                         aaaCCCCCACCAGCCCCCTGGCCCCCATGACGTTCCAACGCCGCAGCCCGCGCCCGGATGACGTCGCCATCGACATCCTGTACTGCGGCGTGTGCCACTCCGACATCCACCAGGCGCGCAACGAATGGGGCATTGCCGTGTACCCGCt                                                                                           >  3:137516/1‑148 (MQ=255)                                                         aaaCCCCCACCAGCCCCCTGGCCCCCATGACGTTCCAACGCCGCAGCCCGCGCCCGGATGACGTCGCCATCGAAATCCTGTACTGCGTCGTGTGCCACTCCGACATCCACCAGGCGCGCAACGAATGGGGCATTGCCGTGTACCCGc                                                                                            <  5:275080/147‑1 (MQ=255)                                                             ccccACCAGCCCCCTGGCCCCCATGACGTTCCAACGCCGCAGCCCGCGCCCGGATGACGTCGCCATCGACATCCTGTACTGCGGCGTGTGCCACTCCGACATCCACCAGGCGCGCAACGAATGGGGCATTGCCGTGTACCCGCTGATGc                                                                                      >  1:225522/1‑149 (MQ=255)                                                             ccccACCAGCCCCCTGGCCCCCATGACGTTCCAACGCCGCAGCCCGCGCCCGGATGACGTCGCCATCGACATCCTGTACTGCGGCGTGTGCCACTCCGACATCCACCAGGCGCGCAACGAATGGGGCATTGCCGTGTACCCGCTGATGc                                                                                      >  5:295992/1‑149 (MQ=255)                                                               ccaccaGCCCCCTGGCCCCCATGACGTTCCAACGCCGCAGCCCGCGCCCGGATGACGTCGCCATCGACATCCTGTACTGCGGCGTGTGCCACTCCGACATCCACCAGGCGCGCAACGAATGGGGCATTGCCGTGTACCCGCTGATGCCg                                                                                    >  4:181852/1‑149 (MQ=255)                                                               ccaccaGCCCCCTGGCCCCCATGACGTTCCAACGCCGCAGCCCGCGCCCGGATGACGTCGCCATCGACATCCTGTACTGCGGCGTGTGCCACTCCCACATCCACCAGGCGCGCAACGAATGGGGCATTGCCGTGTACCCGCTGAAGCCg                                                                                    >  4:51239/1‑149 (MQ=255)                                                                caccaGCCCCCTGGCCCCCATGACGTTCCAACGCCGCAGCCCGCGCCCGGATGACGTCGCCATCGACATCCTGTACTGCGGCGTGTGCCACTCCGACATCCACCAGGCGCGCAACGAATGGGGCATTGCCGTGTACCCGCTGATGCCgg                                                                                   <  6:247380/149‑1 (MQ=255)                                                                 cccaGCCCCCTGGCCCCCATGACGTTCCAACGCCGCAGCCCGCGCCCGGATGACGTCGCCATCGACATCCTGTACTGCGGCGTGTGCCACTCCGACATCCACCAGGCGCGCAACGAATGGGGCATTGCCGTGTACCCGCTGATGCCggg                                                                                  <  2:281586/148‑1 (MQ=255)                                                                 accaGCCCCCTGGCCCCCATGACGTTCCAACGCCGCAGCCCGCGCCCGGATGACGTCGCCATCGACATCCTGTACTGCGGCGTGTGCCACTCCGACATCCACCAGGCGCGCAACGAATGGGGCATTGCCGTGTACCCGCTGATGCCggg                                                                                  >  5:240205/1‑149 (MQ=255)                                                                  ccaGCCCCCTGGCCCCCATGACGTTCCAACGCCGCAGCCCGCGCCCGGATGACGTCGCCATCGACATCCTGTACTGCGGCGTGTGCCACTCCGACATCCACCAGGCGCGCAACGAATGGGGCATTGCCGTGTACCCGCTGATGCCGGGc                                                                                 >  7:34438/1‑149 (MQ=255)                                                                   caGCCCCCTGGCCCCCATGACGTTCCAACGCCGCAGCCCGCGACCGGATGACGTCGCCATCGACATCCTGTACTGCGGCGTGTGCCACTCCGACATCCACCAGGCGCGCAACGAATGGGGCATTGCCGTGTACCCGGTGATGCCGGGc                                                                                 >  5:221714/1‑148 (MQ=255)                                                                     gCCCCCTGGCCCCCATGACGTTCCAACGCCGCAGCCCGCGCCCGGATGACGTCGCCATCGACATACTGTACTGCGGCGTGTGCCACTCCGACATCCACCAGGCGCGCAACGAATGGGGCATTGCCGTGTACCCGCTGATGCCGGGCCAc                                                                              <  6:331861/149‑1 (MQ=255)                                                                        cccTGGCCCCCATGACGTTCAAACGCCGCAGCCCGCGCCCGGATGACGTCGCCATCGACATCCTGTACTGTGGCGTGTGCCACTCCGACATCCACCAGGCGCGCAACGAATGGGGAATTGCCGTGTAACCGCTGATGCCGGGCCAc                                                                              >  8:3187/1‑146 (MQ=255)                                                                         ccTGGCCCCCATGACGTTCCAACGCCGCAGCCCGCGCCCGGATGACGTCGCCATCGACATCCTGTACTGCGGCGTGTGCCACTCCGACATCCACCAGGCGCGCAACGAATGGGGCATTGCCGTGTACCCGCTGATGCCGGGCCAc                                                                              >  7:200867/1‑145 (MQ=255)                                                                             gCCCCCATGACGTTCCAACGCCGCAGCCCGCGCCCGGATGACGTCGCCATCGACATCCTGTACTGCGGCGTGTGCCACTCCGACATCCACCAGGCGCGCAACGAATGGGGCATTGCCGTGTACCCGCTGATGCCGGGCCACGAGatca                                                                       <  7:15590/148‑1 (MQ=255)                                                                                    tGACGTCCCAACGCCGCAGCCCGCGCCCGGATGACGTCGCCATCGACATCCTGTACTGCGGCGTGTGCCACTCCGACCTCCACCAGGCGCGCAACGAAGGGGGCATTGCCGTGTACCCGCTGATGCCGGGCCACGAGATCATCGGCCgg                                                               <  3:234885/149‑1 (MQ=255)                                                                                         ggcacacgccgcagtacaggatgtcgatggcgacgtcatccgggcgcgggctgcggcgtGTGCCACTCCGACATCCACCCGGCGCGCACAGAATGGGGCATTGCCGTGTACCCGCTGATGCCGGGCCACGAGATCATCGGCCGGGTCAc                                                          >  8:65579‑M2/60‑149 (MQ=255)                                                                                           cacacgccgcagtacaggatgtcgatggcgacgtcatccgggcgcgggctgcggcgtGTGCCACTCCGACATCCACCAGGCGCGCAACGAATGGGGCATTGCCGTGTACCCGCTGATGCCGGGCCACGAGATCATCGGCCGGGTCAcgg                                                        >  4:157171‑M2/58‑149 (MQ=255)                                                                                            cAACGCCGCAGCCCGCGCCCGGATGACGTCGCCATCGACATCCTGTACTGCGGCGTGTGCCACTCCGACATCCACCAGGCGCGCAACGAATGGGGCATTGCCGTGTACCCGCTGATGCCGGGCCACGAGATCATCGGCCGGGTCAcgg                                                        <  2:225522/148‑1 (MQ=255)                                                                                            acacgccgcagtacaggatgtcgatggcgacgtcatccgggcgcgggctgcggcgtGTGCCACTCCGACATCCACCAGGCGCGCAACGAATGGGGCATTGCCGTGTACCCGCTGATGCCGGGCCACGAGATCATCGGCCGGGTCAcggc                                                       >  2:352828‑M2/57‑149 (MQ=255)                                                                                             aaCGCCGCAGCCCGCGCCCGGATGACGTCGCCATCGACATCCTGTACTGCGGCGTGTGCCACTCCGACATCCACCAGGCGCGCAACGAATGGCGCATTGCCGTGTACCCACTGATGCCGGGACACGAGATCAACGGCCGGGACActgcg                                                      >  4:292736/1‑149 (MQ=255)                                                                                                GCCGCAGCCCGCGCCCGGATGACGTCGCCATCGACATCCTGTACTGCGGCGTGTGCCACTCCGACATCCACCAGGCGCGCAACGAATGGGGCATTGCCGTGTACCCGCTGATGCCGGGCCACGAGATCATCGGCCGGGTCACGGCGGTg                                                   >  5:324493‑M1/1‑149 (MQ=255)                                                                                                       cccGCGCCCGGATGACGTCGCCATCGACATCCTGTACTGCGGCGTGTGCCACTCCGACATCCACCAGGCGCGCAACGAATGGGGCATTGCCGTGTACCCGCTGATGCCGGGCCACGAGATCATCGGCCGGGTCACGGCGGTGGGCGACa                                            <  3:181852/149‑1 (MQ=255)                                                                                                        ccGCGCCCGGATGACGTCGCCATCGACATCCTGTACTGCGGCGTGTGCCACTCCGACATCCACCAGGCGCGCAACGAATGGGGCATTGCCGTGTACCCGCTGATGCCGGGCCACGAGATCATCGGCCGGGTCACGGCGGTGGGCGAc                                             >  1:214006/1‑147 (MQ=255)                                                                                                        ccGCGCCCGGATGACGTCGCCATCGACATCCTGTACTGCGGCGTGTGCCACTCCGACATCCACCAGGCGCGCAACGAATGGGGCATTGCCGTGTACCCGCTGATGCCGGGCCACGAGATCATCGGCCGGGTCACGGCGGTGGGCGACaa                                           <  2:170609/149‑1 (MQ=255)                                                                                                           cgcCCGGATGACGTCGCCATCGACATCCTGTACTGCGGCGTGTGCCACTCCGACATCCACCAGGCGCGCAACGAATGGGGCATTGCCGTGTACCCGCTGATGCCGGGCCACGAGATCATCGGCCGGGTCACGGCGGTGGGCGACAAGGt                                        <  8:34438/149‑1 (MQ=255)                                                                                                                     aCGTCGCCATCGACATCCTGTACTGCGGCGTGTGCCACTCCGACATCCACCAGGCGCGCAACGAATGGGGCATTGCCGTGTACCCGCTGATGCCGGGCCACGAGATCATCGGCCGGGTCAcggcg                                                      >  8:23963/1‑125 (MQ=255)                                                                                                                     aCGTCGCCATCGACATCCTGTACTGCGGCGTGTGCCACTCCGACATCCACCAGGCGCGCAACGAATGGGGCATTGCCGTGTACCCGCTGATGCCGGGCCACGAGATCATCGGCCGGGTCAcggcg                                                      <  7:23963/125‑1 (MQ=255)                                                                                                                       gTCGCCATCGACATCCTGTACTGCGGCGTGTGCCACTCCGACATCCACCAGGCGCGCAACGAATGGGGCATTGCCGTGTACCCGCTGATGCCGGGCCACGAGATCATCGGCCGGGTCACGGCGGTGGGCGACAAGGTCACCGCGcac                              >  5:313664/1‑147 (MQ=255)                                                                                                                        gacgtcatccgggcgcgggctgcggcgtGTGCCACTCCGACATCCACCAGGCGCGCAACGAATGGGGCATTGCCGTGTACCCGCTGATGCCGGGCCACGAGATCATCGGCCGGGTCACGGCGGTGGGCGACAAGGTCACCGCGCACAAg                           <  3:157171‑M2/121‑1 (MQ=255)                                                                                                                              tCGACATCCTGTACTGCGGCGTGTGCCACTCCGACATCCACCAGGCGCGCAACGAATGGGGCATTGCCGTGTACCCGCTGATGCCGGGCCACGAGATCATCGGCCAGGTCACGGCGGTGGGCGACAAGGTCACCGCGCACAAGGTCGGt                     <  4:137516/149‑1 (MQ=255)                                                                                                                                  cATCCTGTACTGCGGCGTGTGCCACTCCGACATCCACCAGGCGCGCAACGAATGGGGCATTGCCGTGTACCCGCTGATGCCGGGCCACGAGATCATCGGCCGGGTCACGGCGGTGGGCGACAAGGTCACCGCGCACAAGGTCGGTGAcc                 <  4:65218/149‑1 (MQ=255)                                                                                                                                   aTCCTGTACTGCGGCGTGTGCCACTCCGACATCCACCAGGCGCGCAACGAATGGGGCATTGCCGTGTACCCGCTGATGCCGGGCCACGAGATCATCGGCCGGGTCACGGCGGTGGGCGACAAGGTCACCGCGCACAAGGTCGGTGACCt                >  2:46785/1‑149 (MQ=255)                                                                                                                                      cTGTACTGCGGCGTGTGCCACTCCGACATCCACCAGGCGCGCAACGAATGGGGCATTGCCGTGTACCCGCTGATGCCGGGCCACGAGATCATCGGCCGGGTCACGGCGGTGGGCGACAAGGTCACCGCGCACAAGGTCGGTGACCtggt             >  7:49493/1‑149 (MQ=255)                                                                                                                                         tACTGCGGCGTGTGCCACTCCGACATCCACCAGGCGCGCAACGAATGGGGCATTGCCGTGTACCCGCTGATGCCGGGCCACGATATCATCGGCCGGGTCACGGCGGTGGGCGACAAGGTCACCGCGCACAAGGTCGGTGACCtggtgg           <  3:292736/148‑1 (MQ=255)                                                                                                                                         tACTGCGGCGTGTGCCACTCCGACATCCACCAGGCGCGCAACGAATGGGGCATTGCCGTGTACCCGCTGATGCCGGGCCACGAGATCATCGGCCGGGTCACGGCGGTGGGCGACAAGGTCACCGCGCACAAGGTCGGTGACCtggtgg           <  1:39328/148‑1 (MQ=255)                                                                                                                                         tACTGCGGCGTGTGCCACTCCGACATCCACCAGGCGCGCAACGAATGGGGCATTGCCGTGTACCCGCTGATGCCGGGCCACGAGATCATCGGCCGGGTCACGGCGGTGGGCGACAAGGTCACCGCGCACAAGGTCGGTGACCtggtgg           <  6:194986/148‑1 (MQ=255)                                                                                                                                         tACTGCGGCGTGTGCCACTCCGACATCCACCAGGCGCGCAACGAATGGGGCATTGCCGTGTACCCGCTGATGCCGGGCCACGAGATCATCGGCCGGGTCACGGCGGTGGGCGACAAGGTCACCGCGCACAAGGTCGGTGACCtggtgg           <  1:212183/148‑1 (MQ=255)                                                                                                                                         tACTGCGGCGTGTGCCACTCCGACATCCACCAGGCGCGCAACGAATGGGGCATTGCCGTGTACCCGCTGATGCCGGGCCACGAGATCATCGGCCGGGTCACGGCGGTGGGCGACAAGGTCACCGCGCACAAGGTCGGTGACCtggtg            <  6:240205/147‑1 (MQ=255)                                                                                                                                              cggcgtGTGCCACTCCGACATCCACCAGGCGCGCAACGAATGGGGCATTGCCGTGTACCCGCTGATGCCGGGCCACGAGATCATCGGCCGGGTCACGGCGGTGGGCGACAAGGTCACCGCGCACAAGGTCGGTGACCTGGTGGGCGTCg     >  3:291427‑M2/7‑149 (MQ=255)                                                                                                                                                 cgtGTGCCACTCCGACATCCACCAGGCGCGCAACGAATGGGGCATTGCCGTGTACCCGCTGATGCCGGGCCACGAGATCATCGGCCGGGTCACGGCGGTGGGCGACAAGGTCACCGCGCACAAGGTCGGTGACCTGGTGGGCGTCGGCt  <  7:190736‑M2/146‑1 (MQ=255)                                                                                                                                                    |                                                                                                                                                  ATCGTTTCACTTCACTGCGAGGCCCTGCATGTATACCGCCATCGGTTATGCCGCTCAAACCCCCACCAGCCCCCTGGCCCCCATGACGTTCCAACGCCGCAGCCCGCGCCCGGATGACGTCGCCATCGACATCCTGTACTGCGGCGTGTGCCACTCCGACATCCACCAGGCGCGCAACGAATGGGGCATTGCCGTGTACCCGCTGATGCCGGGCCACGAGATCATCGGCCGGGTCACGGCGGTGGGCGACAAGGTCACCGCGCACAAGGTCGGTGACCTGGTGGGCGTCGGCT  >  NC_002947/2772969‑2773261

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.