New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3221462 =	42 (0.680)	3 (0.050)	3/250	NT	7.5%	coding (1232/1653 nt)	PP_2823	methyl‑accepting chemotaxis transducer
	?	NC_002947	3221508 =	35 (0.600)					coding (1186/1653 nt)	PP_2823	methyl‑accepting chemotaxis transducer

GGCAACAGCGTGCTCAGCTCGGTGCAGGCCATGGAACAACTGGAAGCAGAAACCCAGCACGTCGGCTCGGTGCTGACGGTGATCCGCAGCATCGCCGAACAGACCAACCTGCTCGCCCTGAACGCCGCCATCGAAGCGGCACGGGCTGGCGAGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/3221616‑3221462 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcgagcaGGTTGGTCTGTTCGGCGATGCTGCGGATCACCGTCAGCACCGAGCCGACGTGCTGGGTTTCTGCTTCCAGTTGTTCCATGGCCTGCACCGAGCTGAGCACGCTGTTGCCCAGGTCGCCGATGCTCAAGGACAGGCTGTCGATGTT  >  NC_002947/3221508‑3221652                                                                                                                                                                                                                                                                                                              GGCAACAGCGTGCTCAGCTCGGTGCAGGCCATGGAACAACTGGAAGCAGAAACCCAGCACGTCGGCTCGGTGCTGACGGTGATCCGCAGCATCGCCGAACAGACCAACCTGCTCGCCCTGAACGCCGCCATCGAAGCGGCACGGGCTGG                                                                                                                                                         <  3:99432/149‑1  GCAACAGCGTGCTCAGCTCGGTGCAGGCCATGGAACAACTGGAAGCAGAAACCCAGCACGTCGGCTCGGTGCTGACGGTGATCCGCAGCATCGCCGAACAGACCAACCTGCTCGCCCTGAACGCCGCCATCGAAGCGGCACGGGCTGGC                                                                                                                                                        <  5:179777/149‑1   CAACAGCGTGCTCAGCTCGGTGCAGGCCATGGAACAACTGGAAGCAGAAACCCAGCACGTCGGCTCGGTGCTGACGGTGATCCGCAGCATCGCCGAACAGACCAACCTGCTCGCCCTGAACGCCGCCATCGAAGCGGCACGGGCTGGC                                                                                                                                                        >  6:251012/1‑148    AACAGCGTGCTCAGCTCGGTGCAGGCCATGGAACAACTGGAAGTAGAAACCCAGCACGTCGGCTCGGTGCTGACGGTGATCCGCAGCATCGCCGAACAGACCAACCTGCTCGCCCTGAACGCCGCCATCGAAGCGGCACGGGCTGGC                                                                                                                                                        >  2:162784/1‑147     ACAGCGTGCTCAGCTCGGTGCAGGCCATGGAACAACTGGAAGCAGAAACCCAGCACGTCGGCTCGGTGCTGACGGTGATCCGCAGCATCGCCGAACAGACCAACCTGCTCGCCCTGAACGCCGCCATCGAAGCGGCACGGGCTGGCGAG                                                                                                                                                     <  3:9779/149‑1                                  GAACAACTGGAAGCAGAAACCCAGCACGTCGGCTCGGTGCTGACGGTGATCCGCAGCATCGCCGAACAGACCAACCTGCTCGCCCTGAACGCCGCCATCGAAGCGGCACGGGCTGGC                                                                                                                                                        <  3:89151/117‑1                                  GAACAACTGGAAGCAGAAACCCAGCACGTCGGCTCGGTGCTGACGGTGATCCGCAGCATCGCCGAACAGACCAACCTGCTCGCCCTGAACGCCGCCATCGAAGCGGCACGGGCTGGC                                                                                                                                                        >  4:89151/1‑117                                                                                                         CAACCTGCTCGCCCTGAACGCCGCCATCGAAGCGGCACGGGCTGGCGAGCAGGTTGGTCTGTTCGGCGATGCTGCGGATCACCGTCAGCACCGAGCCGACGTGCTGGGTTTCTGCTTCCAGTTGTTCCATGGCCTGCACCGAGCTGAGC                                                 >  4:93212/1‑149                                                                                                               GCTCGCCCTGAACGCCGCCATCGAAGCGGCACGGGCTGGCGAGCAGGTTGGTCTGTTCGGCGATGCTGCGGATCACCGTCAGCACCGAGCCGACGTGCTGGGTTTCTGCTTCCAGTTGTTCCATGGCCTGCACCGAGCTGAGCACGCTG                                           >  7:61130/1‑149                                                                                                                CTCGCCCTGAACGCCGCCATCGAAGCGGCACGGGCTGGCGAGCAGGTTGGTCTGTTCGGCGATGCTGCGGATCACCGTCAGCACCGAGCCGACGTGCTGGGTTTCTGCTTCCAGTTGTTCCATGGCCTGCACCGAGCTGAGCACGCTGT                                          >  3:270963/1‑149                                                                                                                                                        AGCAGGTTGGTCTGTTCGGCGATGCTGCGGATCACCGTCAGCACCGAGCCGACGTGCTGGGTTTCTGCTTCCAGTTGTTCCATGGCCTGCACCGAGCTGAGCACGCTGTTGCCCAGGTCGCCGATGCTCAAGGACAGGCTGTCGATGTT  <  6:266987/149‑1                                                                                                                                                        AGCAGGTTGGTCTGTTCGGCGATGCTGCGGATCACCGTCAGCACCGAGCCGACGTGCTGGGTTTCTGCTTCCAGTTGTTCCATGGCCTGCACCGAGCTGAGCACGCTGTTGCCCAGGTCGCCGATGCTCAAGGACAGGCTGTCGATGTT  <  6:64688/149‑1                                                                                                                                                                                                                                                                                                              GGCAACAGCGTGCTCAGCTCGGTGCAGGCCATGGAACAACTGGAAGCAGAAACCCAGCACGTCGGCTCGGTGCTGACGGTGATCCGCAGCATCGCCGAACAGACCAACCTGCTCGCCCTGAACGCCGCCATCGAAGCGGCACGGGCTGGCGAGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/3221616‑3221462 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcgagcaGGTTGGTCTGTTCGGCGATGCTGCGGATCACCGTCAGCACCGAGCCGACGTGCTGGGTTTCTGCTTCCAGTTGTTCCATGGCCTGCACCGAGCTGAGCACGCTGTTGCCCAGGTCGCCGATGCTCAAGGACAGGCTGTCGATGTT  >  NC_002947/3221508‑3221652

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.