New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3648640 =	66 (1.060)	6 (0.100)	6/258	NT	8.6%	intergenic (+117/+1574)	PP_3214/PP_3216	hypothetical protein/cysteine dioxygenase
	?	NC_002947	3648684 =	64 (1.060)					intergenic (+161/+1530)	PP_3214/PP_3216	hypothetical protein/cysteine dioxygenase

GGGCTACCTGGACTGGGAATTTGGCCTGATTGCGCAGCTTGAGCGCGATGGCACTCATGGTTTCAGGGTGCTTTGAACCGTATCCACGGTGGTATTTGAAACGACGCGCTGGATCGAAAGCGGGCCTGGACGGCCGAAAGCTTTCGAACCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/3648791‑3648640 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccagCGCGTCGTTTCAAATACCACCGTGGATACGGTTCAAAGCACCCTGAAACCATGAGTGCCATCGCGCTCAAGCTGCGCAATCAGGCCAAATTCCCAGTCCAGGTAGCCCTGCATCGCCTCGTGTGGGTTGTCTGTGCCTTCATAGGGAC  >  NC_002947/3648684‑3648831                                                                                                                                                                                                                                                                                                              GGGCTACCTGGACTGGGAATTTGGCCTGATTGCGCAGCTTGAGCGCGATGGCACTCATGGTTTCAGGGTGCTTTGAACCGTATCCACGGTGGTATTTGAAACGACGCGCTGGATCGAAAGCGGGCCTGGACGGCCGAAAGCTTTCGAAC                                                                                                                                                         <  2:275471/149‑1  GGCTACCTGGACTGGGAATTTGGCCTGATTGCGCAGCTTGAGCTCGATGGCACTCATGGTTTCAGGGTGCTTTGAACCGTATCCACGGTGGTATTTGAAACGACGCGCTGGATCGAAAGCGGGCATGGACGGCCGAAAGCTTTCGAAC                                                                                                                                                         >  8:214221/1‑148  GGCTACCTGGACTGGGAATTTGGCCTGATTGCGCAGCTTGAGCGCGATGGCACTCATGGTTTCAGGGTGCTTTGAACCGTATCCACGGTGGTATTTGAAACGACGCGCTGGATCGAAAGCGGGCCTGGACGGCCGAAAGCTTTCGAACC                                                                                                                                                        <  7:344559/149‑1                                                                                                       GACGCGCTGGATCGAAAGCGGGCCCGGACGGCCAAAAGCTTTCGAACCAGCGCGTCGTTTCAAATACCACCGTGGATACGGTTCAAAGCACCCTGAAACCATGAGTGCCATCGCGCTCAAGCTGCGCAATCAGGCCAAATTCCCAGTC                                                    >  1:52221/1‑148                                                                                                              TGGATCGAAAGCGGGCCTGGACGGCCGAAAGCTTTCGAACCAGCGCGTCGTTTCAAATACCACCGTGGATACGGTTCAAAGCACCCTGAAACCATGAGTGCCATCGCGCTCAAGCTGCGCAATCAGGCCAAATTCCCAGTCCAGGTAGC                                            >  1:184976/1‑149                                                                                                                GATCGAAAGCGGGCCTGGACGGCCGAAAGCTTTCGAACCAGCGCGTCGTTTCAAATACCACCGTGGATACGGTTCAAAGCACCCTGAAACCATGAGTGCCATCGCGCTCAAGCTGCGCAATCA                                                                    <  7:33472/123‑1                                                                                                                GATCGAAAGCGGGCCTGGACGGCCGAAAGCTTTCGAACCAGCGCGTCGTTTCAAATACCACCGTGGATACGGTTCAAAGCACCCTGAAACCATGAGTGCCATCGCGCTCAAGCTGCGCAATCA                                                                    >  8:33472/1‑123                                                                                                                 ATCGAAAGCGGGCCTGGACGGCCGAAAGCTTTCGAACCAGCGCGTCGTTTCAAATACCACCGTGGATACGGTTCAAAGCACCCTGAAACCATGAGTGCCATCGCGCTCAAGCTGCGCAATCAGGCCAAATTCCCAGTCCAGGTAGCCCT                                         >  6:105020/1‑149                                                                                                                                            GCTTTCGAACCAGCGCGTCGTTTCAAATACCACCGTGGATACGGTTCAAAGCACCCTGAAACCATGAGTGCCATCGCGCTCAAGCTGCGCAATCAGGCCAAATTCCCAGTCCAGGTAGCCCTGCATCGCCTCGTGTGGGTTGTCTGTGC              <  5:105020/149‑1                                                                                                                                                      CAGCGCGTCGTTTCAAATACCACCGTGGATACGGTTCAAAGCACCCTGAAACCATGAGTGCCATCGCGCTCAAGCTGCGCAATCAGGCCAAATTCCCAGTCCAGGTAGCCC                                          >  3:352892/1‑111                                                                                                                                                      CAGCGCGTCGTTTCAAATACCACCGTGGATACGGTTCAAAGCACCCTGAAACCATGAGTGCCATCGCGCTCAAGCTGCGCAATCAGGCCAAATTCCCAGGCCAGGTAGCCC                                          <  4:352892/111‑1                                                                                                                                                       AGCGCGTCGTTTCAAATACCACCGTGGATACGGTTCAAAGCACCCTGAAACCATGAGTGCCATCGCGCTCAAGCTGCGCAATCAGGCCAAATTCCCAGTCCAGGTAGCCCTGCATCGCCTCGTGTGGGTTGTCTGTGCCTTCATAGGGA   >  1:158795/1‑149                                                                                                                                                        GCGCGTCGTTTCAAATACCACCGTGGATACGGTTCAAAGCACCCTGAAACCATGAGTGCCATCGCGCTCAAGCTGCGCAATCAGGCCAAATTCCCAGTCCAGGTAGCCCTGCATCGCCTCGTGTGGGTTGTCTGTGCCTTCATAGGGAC  >  5:54837/1‑149                                                                                                                                                                                                                                                                                                              GGGCTACCTGGACTGGGAATTTGGCCTGATTGCGCAGCTTGAGCGCGATGGCACTCATGGTTTCAGGGTGCTTTGAACCGTATCCACGGTGGTATTTGAAACGACGCGCTGGATCGAAAGCGGGCCTGGACGGCCGAAAGCTTTCGAACCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/3648791‑3648640 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccagCGCGTCGTTTCAAATACCACCGTGGATACGGTTCAAAGCACCCTGAAACCATGAGTGCCATCGCGCTCAAGCTGCGCAATCAGGCCAAATTCCCAGTCCAGGTAGCCCTGCATCGCCTCGTGTGGGTTGTCTGTGCCTTCATAGGGAC  >  NC_002947/3648684‑3648831

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.