New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4304612	61 (0.980)	3 (0.050)	3/250	NT	5.1%	coding (598/915 nt)	PP_3776	permease RarD
	?	NC_002947	= 4304637	54 (0.930)					coding (573/915 nt)	PP_3776	permease RarD

GCAGCACGAACTGCATCAGCCCCATGACACTCAGAGGCAGCCGCCGTGCAGCGAACGAAAAGAGCGCCAGCGGCAATAGGGAAACTGCGCCGCAAAGCAGCAGCAGCGCCGTGTCAGCGGAGCCCAGGGCGGCGATACCCGCCACAGGCGTGCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4304459‑4304612 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcgtgctGCTGATGCCGCTGATCCTGTGGGTGAGCACGCCTGTGGCGGGTATCGCCGCCCTGGGCTCCGCTGACACGGCGCTGCTGCTGCTTTGCGGCGCAGTTTCCCTATTGCCGCTGGCGCTCTTTTCGTTCGCTGCACGGCGGCTGCCT  <  NC_002947/4304637‑4304493                                                                                                                                                                                                                                                                                                             GCAGCACGAACTGCATCAGCCCCATGACACTCAGAGGCAGCCGCCGTGCAGCGAACGAAAAGAGCGCCAGCGGCAATAGGGAAACTGCGCCGCAAAGCAGCAGCAGCGCCGTGTCAGCGGAGCCCAGGGCGGCGATACCCGCCACAGGC                                                                                                                                                        <  3:74828/149‑1  CAGCACGAACTGCATCAGCCCCATGACACTCAGAGGCAGCCGCCGTGCAGCGAACGAAAAGAGCGCCAGCGGCAATAGGGAAACTGCGCCGCAAAGCAGCAGCAGCGCCGTGTCAGCGGAGCCCAGGGCGGCGATACCCGCCACAGGCG                                                                                                                                                       <  4:104769/149‑1    GCACGAACTGCATCAGCCCCATGACACTCAGAGGCAGCCGCCGTGCAGCGAACGAAAAGAGCGCCAGCGGCAATAGGGAAACTGCGCCGCAAAGCAGCAGCAGCGCCGTGTCAGCGGAGCCCAGGGCGGCGATACCCGCCACAGGCGTG                                                                                                                                                     <  4:61475/149‑1       CGAACTGCATCAGCCCCATGACACTCAGAGGCAGCCGCCGTGCAGCGAACGAAAAGAGCGCCAGCGGCAATAGGGAAACTGCGCCGCAAAGCAGCAGCAGCGCCGTGTCAGCGGAGCCCAGGGCGGCGATACCCGCCACAGGCGTGCT                                                                                                                                                   >  8:655/1‑148                                        GCCGCCGTGCAGCGAACGAAAAGAGCGCCAGCGGCAATAGGGAAACTGCGCCGCAAAGCAGCAGCAGCGCCGTGTCAGCGGAGCCCAGGGCGGCGATACCCGCCACAGGCGTGCTGCTGATGCCGCTGATCCTGTGGGTGAGCACGCCT                                                                                                                 <  1:142135/149‑1                                                                                           CGCAAAGCAGCAGCAGCGCCGTGTCAGCGGAGCCCAGGGCGGCGATACCCGCCACAGGCGTGCTGCTGATGCCGCTGATCCTGTGGGTGAGCACGCCTGTGG                                                                                                             >  7:32975/1‑102                                                                                           CGCAAAGCAGCAGCAGCGCCGTGTCAGCGGAGCCCAGGGCGGCGATACCCGCCACAGGCGTGCTGCTGATGCCGCTGATCCTGTGGGTGAGCACGCCTGTGG                                                                                                             <  8:32975/102‑1                                                                                                                                                   GGCGTGCTGCTGATGCCGCTGATCCTGTGGGTGAGCACGCCTGTGGCGGGTATCGCCGCCCTGGGCTCCGCTGACACGGCGCTGCTGCTGCTTTGCGGCGCAGTTTCCCTATTGCCGCTGGCGCTCTTTTCGTTCGCTGCACGGCGGCT      >  6:219242/1‑149                                                                                                                                                   GGCGTGCTGCTGATGCCGCTGATCCTGTGGGTGAGCACGCCTGTGGCGGGTATCGCCGCCCTGGGCTCCGCTGACACGGCGCTGCTGCTGCTTTGCGGCGCAGTTTCCCTATTGCCGCTGGCGCTCTTTTCGTTCGCTGCACGGCGGCT      <  7:292658/149‑1                                                                                                                                                       TGCTGCTGATGCCGCTGATCCTGTGGGTGAGCACGCCTGTGGCGGGTATCGCCGCCCTGGGCTCCGCTGACACGGCGCTGCTGCTGCTTTGCGGCGCAGTTTCCCTATTGCCGCTGGCGCTCTTTTCGTTCGCTGCACGGCGGCTGCCT  <  7:259519/149‑1                                                                                                                                                                                                                                                                                                             GCAGCACGAACTGCATCAGCCCCATGACACTCAGAGGCAGCCGCCGTGCAGCGAACGAAAAGAGCGCCAGCGGCAATAGGGAAACTGCGCCGCAAAGCAGCAGCAGCGCCGTGTCAGCGGAGCCCAGGGCGGCGATACCCGCCACAGGCGTGCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4304459‑4304612 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcgtgctGCTGATGCCGCTGATCCTGTGGGTGAGCACGCCTGTGGCGGGTATCGCCGCCCTGGGCTCCGCTGACACGGCGCTGCTGCTGCTTTGCGGCGCAGTTTCCCTATTGCCGCTGGCGCTCTTTTCGTTCGCTGCACGGCGGCTGCCT  <  NC_002947/4304637‑4304493

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.