New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4304612	61 (0.980)	3 (0.050)	3/250	NT	5.1%	coding (598/915 nt)	PP_3776	permease RarD
	?	NC_002947	= 4304637	54 (0.930)					coding (573/915 nt)	PP_3776	permease RarD

CGAACTGCATCAGCCCCATGACACTCAGAGGCAGCCGCCGTGCAGCGAACGAAAAGAGCGCCAGCGGCAATAGGGAAACTGCGCCGCAAAGCAGCAGCAGCGCCGTGTCAGCGGAGCCCAGGGCGGCGATACCCGCCACAGGCGTGCTCACCCACAGGATCAGCGGCATCAGCAGCACGCCCAGCACGAGCGACTCCAGAAACAGGCCCGACCACGGAGGCAGTCGAGCCAGCTTCTTGAGCCAGGTGTAAGTGCCCCAGGTCACGCCAATGACCAGGAACACTCGGCTGTCCA  >  NC_002947/4304465‑4304758                                                                                                                                                    |                                                                                                                                                   cGAACTGCATCAGCCCCATGACACTCAGAGGCAGCCGCCGTGCAGCGAACGAAAAGAGCGCCAGCGGCAATAGGGAAACTGCGCCGCAAAGCAGCAGCAGCGCCGTGTCAGCGGAGCCCAGGGCGGCGATACCCGCCACAGGCGTGCT                                                                                                                                                    >  8:655‑M1/1‑148 (MQ=255)   aaCTGCATCAGCCCCATGACACTCAGAGGCAGCCGCCGTGCAGCGAACGAAAAGAGCGCCAGCGGCAATAGGGAAACTGCGCCGCAAAGCAGCAGCAGCGCCGTGTCAGCGGAGCCCAGGGCGGCGATACCCGCCACAGGCGTGCTCAc                                                                                                                                                 <  7:80262/149‑1 (MQ=255)    aCTGCATCATCCCCATGACACTCAGAGGCAGCCGCCGTGCAGCGAACGAAAAGAGCGCCAGCGGCAATAGGGAAACTGCGCCGCAAAGCAGCAGCAGCGCCGTGTCAGCGGAGCCCAGGGCGGCGATACCCGCCACAGGCGTGCTCAc                                                                                                                                                 <  4:10369/148‑1 (MQ=255)    aCTGCATCAGCCCCATGACACTCAGAGGCAGCCGCCGTGCAGCGAACGAAAAGAGCGCCAGCGGCAATAGGGAAACTGCGCCGCAAAGCAGCAGCAGCGCCGTGTCAGCGGAGCCCAGGGCGGCGATACCCGCCACAGGCGTGCTCAcc                                                                                                                                                >  6:337222/1‑149 (MQ=255)      tGCATCAGCCCCATGACACTCAGAGGCAGCCGCCGTGCAGCGAACGAAAAGAGCGCCAGCGGCAATAGGGAAACTGCGCCGCAAAGCAGCAGCAGCGCCGTGTCAGCGGAGCCCAGGGCGGCGATACCCGCCACAGGCGTGCTCACCca                                                                                                                                              >  6:194565/1‑149 (MQ=255)        cATCAGCCCCATGACACTCAGAGGCAGCCGCCGTGCAGCGAACGAAAAGAGCGCCAGCGGCAATAGGGAAACTGCGCCGCAAAGCAGCAGCAGCGCCGTGTCAGCGGAGCCCAGGGCGGCGATACCCGCCACAGGCGTGCTCACCcaca                                                                                                                                            <  5:251733/149‑1 (MQ=255)        cATCAGCCCCATGACACTCAGAGGCAGCCGCCGTGCAGCGAACGAAAAGAGCGCCAGCGGCAATAGGGAAACTGCGCCGCAAAGCAGCAGCAGCGCCGTGTCAGCGGAGCCCAGGGCGGCGATACCCGCCACAGGCGTGCTCACCca                                                                                                                                              <  4:163573/147‑1 (MQ=255)        cATCAGCCCCATGACACTCAGAGGCAGCCGCCGTGCAGCGAACGAAAAGAGCGCCAGCGGCAATAGGGAAACTGCGCCGCAAAGCAGCAGCAGCGCCGTGTCAGCGGAGCCCAGGGCGGCGATACCCGCCACAGGCGTGCTCACCca                                                                                                                                              >  4:68405/1‑147 (MQ=255)          tCAGCCCCATGACACTCAGAGGCAGCCGCCGTGCAGCGAACGAAAAGAGCGCCAGCGGCAATAGGGAAACTGCGCCGCAAAGCAGCAGCAGCGCCGTGTCAGCGGAGCCCAGGGCGGCGATACCCGCCACAGGCGTGCTCACCCACAg                                                                                                                                           >  5:219242/1‑148 (MQ=255)           cAGCCCCATGACACTCAGAGGCAGCCGCGGTGCAGCGAACGAAAAGAGCGCCAGCGGCAATAGGGAAACTGCGCCGCAAAGCAGCAGCAGCGCCGTGTCAGCGGAGCCCAGGGCGGCGATACCCGCCACAGGCGTGCTCACCCACAGGa                                                                                                                                         >  1:221339/1‑149 (MQ=255)                ccATGACACTCAGAGGCAGCCGCCGTGCAGCGAACGAAAAGTGCGCCAGCGGCAATAGGGAAACTGCGCCTCAAAGCAGCAGCAGCGCCGTGTCAGCGGAGCCGAGGGCGGCGATACCCGCCACAGGCGTGCTCACCCTCAGGATCAGc                                                                                                                                    <  7:318373/149‑1 (MQ=255)                ccATGACACTCAGAGGCAGCCGCCGTGCAGCGAACGAAAAGAGCGCCAGCGGCAATAGGGAAACTGCGCCGCAAAGCAGCAGCAGCGCCGTGTCAGCGGAGCCCAGGGCGGCTATACCCGCCACAGGCGTGCTCACCCACAGGATCAGc                                                                                                                                    <  5:89873/149‑1 (MQ=255)                ccATGACACTCAGAGGCAGCCGCCGTGCAGCGAACGAAAAGAGCGCCAGCGGCAATAGGGAAACTGCGCCGCAAAGCAGCAGCAGCGCCGTGTCAGCGGAGCCCAGGGCGGCGATACCCGCCACAGGCGTGCTCACCCACAGGATCAGc                                                                                                                                    <  3:279836/149‑1 (MQ=255)                 cATGACACTCAGAGGCAGCCGCTGTGCAGCGAACGAAAAGAGCGCCAGCGGCAATAGGGAAACTGCGCCGCAAAGCAGCAGCAGCGCCGTGTCAGCGGAGCCCAGGGCGGCGATACCCGCGACAGGCGTGCTCACCCACAGGATCAGCg                                                                                                                                   <  1:221215/149‑1 (MQ=255)                 cATGACACTCAGAGGCAGCCGCCGTGCAGCGAACGAAAAGAGCGCCAGCGGCAATAGGGAAACTGCGCCGCAAAGCAGCAGCAGCGCCGTGTCAGCGGAGCCCAGGGCGGCGATACCCGCCACAGGCGTGCTCACCCACAGGATCAGCg                                                                                                                                   <  2:221339/149‑1 (MQ=255)                  aTGACACTCAGAGGCAGCCGCCGTGCAGCGAACGAAAAGAGCGCCAGCGGCAATAGGGAAACTGCGCCGCAAAGCAGCAGCAGCGCCGTGTCAGCGGAGCCCAGGGCGGCGATACCCGCCACAGGCGTGCTCACCCACAGGATCAGCgg                                                                                                                                  <  8:280168/149‑1 (MQ=255)                   tGACACTCAGAGGCAGCCGCCGTGCAGCGAACGAAAAGAGCGCCAGCGGCAATAGGGAAACTGCGCCGCAAAGCAGCAGCAGCGCCGTGTCAGCGGAGCCCAGGGCGGCGATACCCGCCACAGGCGTGCTCACCCACAGGATCAGCgg                                                                                                                                  >  6:28167/1‑148 (MQ=255)                    gACACTCAGAGGCAGCCGCCGTGCAGCGAACGAAAAGAGCGCCAGCGGCAATAGGGAAACTGCGCCGCAAAGCAGCAGCAGCGCCGTGTCAGCGGAGCCCAGGGCGGCGATACCCGCCACAGGCGTGCTCACCCACAGGATCAGCGGCa                                                                                                                                >  7:301695/1‑149 (MQ=255)                     acacTCAGAGGCAGCCGCCGTGTAGCGAACGAAAAGAGCGCCAGCGGCAATAGGGAAACTGCGCCGCAAAGCAGCAGCAGCGCCGTGTCAGCGGAGCCCAGGGCGGCGATACCCGCCACAGGCGTGCTCACCCACAGGATCAGCGGCAt                                                                                                                               <  2:152137/149‑1 (MQ=255)                         tCAGAGGCAGCCGCCGTGCAGCGAACGAAAAGAGCGCCAGCGGCAATAGGGAAACTGCGCCGCAAAGCAGCAGCAGCGCCGTGTCAGCGGAGCCCAGGGCGGCGATACCCGCCACAGGCGTGCTCACCCACAGGATCAGCGGCATcag                                                                                                                            >  7:20111/1‑148 (MQ=255)                           agagGCAGCCGCCGTGCAGCGAACGAAAAGAGCGCCAGCGGCAATAGGGAAACTGCGCCGCAAAGCAGCAGCAGCGCCGTGTCAGCGGAGCCCAGGGCGGCGATACCCGCCACAGGCGTGCTCACCCACAGGATCAGCGGCATcag                                                                                                                            >  6:202343/1‑146 (MQ=255)                           agagGCAGCCGCCGTGCAGCGAACGAAAAGAGCGCCAGCGGCAATAGGGAAACTGCGCCGCAAAGCAGCAGCAGCGCCGTGGCAGCGGAGCCCAGGGCGGCGATACCCGCCACAGGCGTGCTCACCCACAGGATCAGCGGCATcagc                                                                                                                           <  2:46700/147‑1 (MQ=255)                             agGCAGCCGCCGTGCAGCGAACGAAAAGAGCGCCAGCGGCAATAGGGAAACTGCGCCGCAAAGCAGCAGCAGCGCCGTGTCAGCGGAGCCCAGGGCGGCGATACCCGCCACAGGCGTGCTCACCCACAGGATCAGCGGCATCAGCagca                                                                                                                       <  7:259519‑M2/149‑5 (MQ=255)                                 aGCCGCCGTGCAGCGAACGAAAAGAGCGCCAGCGGCAATAGGGAAACTGCGCCGCAAAGCAGCAGCAGCGCCGTGTCAGCGGAGCCCAGGGCGGCGATACCCGCCACAGGCGTGCTCACCCACAGGATCAGCGGCATCAGCagcacgcc                                                                                                                   >  6:219242‑M2/1‑141 (MQ=255)                                 aGCCGCCGTGCAGCGAACGAAAAGAGCGCCAGCGGCAATAGGGAAACTGCGCCGCAAAGCAGCAGCAGCGCCGTGTCAGCGGAGCCCAGGGCGGCGATACCCGCCACAGGCGTGCTCACCCACAGGATCAGCGGCATCAGCagcacgcc                                                                                                                   <  7:292658‑M2/149‑9 (MQ=255)                                  gccgccGTGCAGCGAACGAAAAGAGCGCCAGCGGCAATAGGGAAACTGCGCCGCAAAGCAGCAGCAGCGCCGTGTCAGCGGAGCCCAGGGCGGCGATACCCGCCACAGGCGTGCTgctgatgccgctgatcctgtgggtgagcacgcct                                                                                                                  <  1:142135‑M1/149‑35 (MQ=255)                                  gccgccGTGCAGCGAACGAAAAGAGCGCCAGCGGCAATAGGGAAACTGCGCCGCAAAGCAGCAGCAGCGCCGTGTCAGCGGAGCCCAGGGCGGCGATACCCGCCACAGGCGTGCTCACCCACAGGATCAGCGGCATCAGCAGCACGccc                                                                                                                  <  8:20111/149‑1 (MQ=255)                                           cAGCGAACGAAAAGAGCGCCAGCGGCAATAGGGAAACTGCGCCGCAAAGCAGCAGCAGCGCCGTGTCAGCGGAGCCCAGGGCGGCGATACCCGCCACAGGCGTGCTCACCCACAGGATCAGCGGCATCAGCAGCACGCCCAGCACGAGc                                                                                                         <  5:337222/149‑1 (MQ=255)                                           cAGCGAACGAAAAGAGCGCCAGCGGCAATAGGGAAACTGCGCCGCAAAGCAGCAGCAGCGCCGTGTCAGCGGAGCCCAGGGCGGCGATACCCGCCACAGGCGTGCTCACCCACAGGATCAGCGGCATCAGCAGCACGCCCAGCACGAGc                                                                                                         <  3:68405/149‑1 (MQ=255)                                             gCGAACGAAAAGAGCGCCAGCGGCAATAGGGAAACTGCGCCGCAAAGCAGCAGCAGCGCCGTGTCAGCGGAGCCCAGGGCGGCGATACCCGCCACAGGCGTGCTCACCCACAGGATCAGCGGCATCAGCAGCACGCCCAGCACGAGCGa                                                                                                       <  7:228401/149‑1 (MQ=255)                                               gaacgaaAAGAGCGCCAGCGGCAATAGGGAAACTGCGCCGCAAAGCAGCAGCAGCGCCGTGTCAGCGGAGCCCAGGGCGGCGATACCCGCCACAGGCGTGCTCACCcaca                                                                                                                                            >  2:107558/1‑110 (MQ=255)                                                aacgaaAAGAGCGCCAGCGGCAATAGGGAAACTGCGCCGCAAAGCAGCAGCAGCGCCGTGTCAGCGGAGCCCAGGGCGGCGATACCCGCCACAGGCGTGCTCACCCACAGGATCAGCGGCATCAGCAGCACGCCCAGCACGAGCGACTc                                                                                                    <  8:276398/149‑1 (MQ=255)                                                 acgaaAAGAGCGCCAGCGGCAATAGGGAAACTGCGCCGCAAAGCAGCAGCAGCGCCGTGTCAGCGGAGCCCAGGGCGGCGATACCCGCCACAGGCGTGCTCACCCACAGGATCAGCGGCATCAGCAGCACGCCCAGCACGAGCGACTcc                                                                                                   <  7:655/149‑1 (MQ=255)                                                   gaaAAGAGCGCCAGCGGCAATAGGGAAACTGCGCCGCAAAGCAGCAGCAGCGCCGTGTCAGCGGAGCCCAGGGCGGCGATACCCGCCACAGGCGTGCTCACCCACAGGATCAGCGGCATCAGCAGCACGCCCAGCACGAGCGACTc                                                                                                    >  2:319769/1‑146 (MQ=255)                                                      aaGAGCGCCAGCGGCAATAGGGAAACTGCGCCGCAAAGCAGCAGCAGCGCCGTGTCAGCGGAGCCCAGGGCGGCGATACCCGCCACAGGCGTGCTCACCCACAGGATCAGCGGCATCAGCAGCACGCCCAGCACGAGCGACTCCa                                                                                                  <  1:386427/145‑1 (MQ=255)                                                      aaGAGCGCCAGCGGCAATAGGGAAACTGCGCCGCAAAGCAGCAGCAGCGCCGTGTCAGCGGAGCCCAGGGCGGCGATACCCGCCACAGGCGTGCTCACCCACAGGATCAGCGGCATCAGCAGCACGCCCAGCACGAGCGACTCCa                                                                                                  >  2:386427/1‑145 (MQ=255)                                                      aaGAGCGCCAGCGGCAATAGGGAAACTGCGCCGCAAAGCAGCAGCAGCGCCGTGTCAGCGGAGCCCAGGGCGGCGATACCCGCCACAGGCGTGCTCACCCACAGGATCAGCGGCATCAGCAGCACGCCCAGCACGAGCGACTCCAGaaa                                                                                              <  6:41917/149‑1 (MQ=255)                                                        gagCGCCAGCGGCAATAGGGAAACTGCGCCGCAAAGCAGCAGCAGCGCCGTGTCAGCGGAGCCCAGGGCGGCGATACCCGCCACAGGCGTGCTCACCCACAGGATCAGCGGCATCAGCAGCACGCCCAGCACGAGCGACTCCAGaaa                                                                                              >  7:159532/1‑147 (MQ=255)                                                          gcgcCAGCGGCAATAGGGAAACTGCGCCGCAAAGCAGCAGCAGCGCCGTGTCAGCGGAGCCCAGGGCGGCGATACCCGCCACAGGCGTGCTCACCCACAGGATCAGCGGCATCAACAGCACGCCCAGCACGAGCGACTCCAGAAACAgg                                                                                          <  7:61928/149‑1 (MQ=255)                                                              cAGCGGCAATAGGGAAACTGCGCCGCAAAGCAGCAGCAGCGCCGTGTCAGCGGAGCCCAGGGCGGCGATACCCGCCACAGGCGTGCTCACCCACAGGATCAGCGGCATCAGCAGCACGCCCAGCACGAGCGACTCCAGAAACAGGccc                                                                                       >  6:342481/1‑148 (MQ=255)                                                                   gCAATAGGGAAACTGCGCCGCAAAGCAGCAGCAGCGCCGTGTCAGCGGAGCCCAGGGCGGCGATACCCGCCACAGGCGTGCTCACCCACAGGATCAGCGGCATCAGCAGCACGCCCAGCACGAGCGACTCCAGAAACAGGCCCGACCAc                                                                                 <  5:194565/149‑1 (MQ=255)                                                                   gCAATAGGGAAACTGCGCCGCAAAGCAGCAGCAGCGCCGTGTCAGCGGAGCCCAGGGCGGCGATACCCGCCACAGGCGTGCTCACCCACAGGATCAGCGGCATCAGCAGCACGCCCAGCACGAGCGACTCCAGAAACAGGCCCGACCAc                                                                                 >  1:89404/1‑149 (MQ=255)                                                                     aaTAGGGAAACTGCGCCGCAAAGCAGCAGCAGCGCCGTGTCAGCGGAGCCCAGGGCGGCGATACCCGCCACAGGCGTGCTCACCCACAGGATCAGCGGCATCAGCAGCACGCCCAGCACGAGCGACTCCAGAAACAGGCCCGACCACg                                                                                >  6:11525/1‑148 (MQ=255)                                                                       tAGGGAAACTGCGCCGCAAAGCAGCAGCAGCGCCGTGTCAGCGGAGCCCAGGGCGGCGATACCCGCCACCGGCGTGCTCACCCACAGGATCAGCGGCATCAGCAGCACGCCCAGCACGAGCGACTCCAGAAACAGGCCCGACCACGGAg                                                                             >  4:168456/1‑149 (MQ=255)                                                                       tAGGGAAACTGCGCCGCAAAGCAGCAGCAGCGCCGTGTCAGCGGAGCCCAGGGCGGCGATACCCGCCACAGGCGTGCTCACCCACAGGATCAGCGGCATCAGCAGCACGCCCAGCACGAGCGACTCCAGAAACAGGCCCGACCACGGAg                                                                             <  3:215208/149‑1 (MQ=255)                                                                          ggAAACTGCGCCGCAAAGCAGCAGCAGCGCCGTGTCAGCGGAGCCCAGGGCGGCGATACCCGCCACAGGCGTGCTCACCCACAGGATCAGCGGCATCAGCAGCACGCCCAGCACGAGCGACTCCAGAAACAGGCCCGACCACGGAGGCa                                                                          <  5:11525/149‑1 (MQ=255)                                                                            aaaCTGCGCCGCAAAGCAGCAGCAGCGCCGTGTCAGCGGAGCCCAGGGCGGCGATACCCGCCACAGGCGTGCTCACCCACAGGATCAGCGGCATCAGCAGCACGCCCAGCACGAGCGACTCCAGAAACAGGCCCGACCACGGAGGCAGt                                                                        <  5:202343/149‑1 (MQ=255)                                                                               cTGCGCCGCAAAGCAGCAGCAGCGCCGTGTCAGCGGAGCCCAGGGCGGCGATACCCGCCACAGGCGTGCTCACCCACAGGATCAGCGGCATCAGCAGCACGCCCAGCACGAGCGACTCCAGAAACAGGCCCGACCACGGAGGCAGTCGa                                                                     <  2:89404/149‑1 (MQ=255)                                                                                  cgccgcAAAGCAGCAGCAGCGCCGTGTCAGCGGAGCCCAGGGCGGCGATACCCGCCACAGGCGTGCTCACCCACAGGATCAGCGGCATCAGCAGCACGCCCAGCACGAGCGACTCCAGAAACAGGCCCGACCACGGAGGCAGTCGAGc                                                                   <  5:361502/148‑1 (MQ=255)                                                                                  cgccgcAAAGCAGCAGCAGCGCCGTGTCAGCGGAGCCCAGGGCGGCGATACCCGCCACAGGCGTGCTCACCCACAGGATCAGCGGCATCAGCAGCACGCCCAGCACGAGCGACTCCAGAAACAGGCCCGACCACGGAGGCAGTCGAGc                                                                   <  5:370279/148‑1 (MQ=255)                                                                                   gccgcAAAGCAGCAGCAGCGCCGTGTCAGCGGAGCCCAGGGCGGCGATACCCGCCACAGGCGTGCTCACCCACAGGATCAGCGGCATCAGCAGCACGCCCAGCACGAGCGACTCCAGAAACAGGCCCGACCACGGAGGCAGTCGAGc                                                                   >  6:52787/1‑147 (MQ=255)                                                                                     cgcAAAGCAGCAGCAGCGCCGTGTCAGCGGAGCCCAGGGCGGCGATACCCGCCACAGGCGTGCTgctgatgccgctgatcctgtgggtgagcacgcctgtgg                                                                                                              >  7:32975‑M1/1‑64 (MQ=255)                                                                                     cgcAAAGCAGCAGCAGCGCCGTGTCAGCGGAGCCCAGGGCGGCGATACCCGCCACAGGCGTGCTgctgatgccgctgatcctgtgggtgagcacgcctgtgg                                                                                                              <  8:32975‑M1/102‑39 (MQ=255)                                                                                       cAAAGCAGCAGCAGCGCCGTGTCAGCGGAGCCCAGGGCGGCGATACCCGCCACAGGCGTGCTCACCCACAGGATCAGCGGCATCAGCAGCACGCCCAGCACGAGCGACTCCAGAAACAGGCCCGACCACGGAGGCAGTCGAGCCAGctt                                                             >  4:38997/1‑149 (MQ=255)                                                                                            cagcagcagcGCCGTGTCAGCGGAGCCCAGGGCGGCGATACCCGCCACAGGCGTGCTCACCCACAGGATCAGCGGCATCAGCAGCACGCCCAGCTCGAGCGACTCCAGAAACAGGCCCGACCACGGAGGCAGTCGAGCCAGCTTCTTGa                                                        <  1:100509/149‑1 (MQ=255)                                                                                            cagcagcagcGCCGTGTCAGCGGAGCCCAGGGCGGCGATACCCGCCACAGGCGTGCTCACCCACAGGATCAGCGGCATCAGCAGCACGCCCAGCACGAGCGACTCCAGAAACAGGCCCGACCACGGAGGCAGTCGAGCCAGCTTCTTGa                                                        <  8:301695/149‑1 (MQ=255)                                                                                            cagcagcagcGCCGTGTCAGCGGAGCCCAGGGCGGCGATACCCGCCACAGGCGTGCTCACCCACAGGATCAGCGGCATCAGCAGCACGCCCAGCACGAGCGACTCCAGAAACAGGCCCGACCACGGAGGCAGTCGAGCCAGCTTCTTGa                                                        <  5:52787/149‑1 (MQ=255)                                                                                                 gcagcGCCGTGTCAGCGGAGCCCAGGGCGGCGATACCCGCCACAGGCGTGCTCACCCACAGGATCAGCGGCATCAGCAGCACGCCCAGCACGAGCGACTCCAGAAACAGGCCCGACCACGGAGGCAGTCGAGCCAGCTTCTTGAGCCAg                                                   >  5:164989/1‑149 (MQ=255)                                                                                                 gcagcGCCGTGTCAGCGGAGCCCAGGGCGGCGATACCCGCCACAGGCGTGCTCACCCACAGGATCAGCGGCATCAGCAGCACGCCCAGCACGAGCGACTCCAGAAACAGGCCCGACCACGGAGGCAGTCGAGCCAGCTTCTTGAGCCAg                                                   <  5:342481/149‑1 (MQ=255)                                                                                                    gcgcCGTGTCACCGGAGCCCAGGGCGGCGATCCCCGCCACACGCGTGCTCACCCACAGGAGCAGCGGCATCACCAGCACGCCCAGCACGCGCGACTCCAGAAACAGGCCCGACCACGGAgg                                                                            >  3:79183/1‑121 (MQ=255)                                                                                                      gcCGTGTCAGCGGAGCCCAGGGCGGCGATACCCGCCACAGGCGTGCTCACCCACAGGATCAGCGGCATCAGCAGCACGCCCAGCACGAGCGACTCCAGAAACAGGCCCGACCACGGAGGCAGTCGAGCCAGCTTCTTGAGCCAGgtgt                                               >  3:46664/1‑148 (MQ=255)                                                                                                            tCAGCGGAGCCCAGGGCGGCGATACCCGCCACAGGCGTGCTCACCCACAGGATCAGCGGCATCAGCAGCACGCCCAGCACGAGCGACTCCAGAAACAGGCCCGACCACGGAGGCAGTCGAGCCAGCTTCTTGAGCCAGGTGTAAGTGc                                         <  5:28167/148‑1 (MQ=255)                                                                                                                    gCCCAGGGCGGCGATACCCGCCACAGGCGTGCTCACCCACAGGATCAGCGGCATCAGCAGCACGCCCAGCACGAGCGACTCCAGAAACAGGCCCGACCACGGAGGCAGTCGAGCCAGCTTCTTGAGCCAGGTGTAAGTGCCCCAGGTCa                                <  8:259519/149‑1 (MQ=255)                                                                                                                       cAGGGCGGCGATACCCGCCACAGGCGTGCTCACCCACAGGATCAGCGGCATCAGCAGCACGCCCAGCACGAGCGACTCCAGAAACAGGCCCGACCACGGAGGCAGTCGAGCCAGCTTCTTGAGCCAGGTGTAAGTGCCCCAGGTCACGc                             <  5:141625/149‑1 (MQ=255)                                                                                                                           gcggcgATACCCGCCACAGGCGTGCTCACCCACAGGATCAGCGGCATCAGCAGCACGCCCAGCACGAGCGACTCCAGAAACAGGCCCGACCACGGAGGCAGTCGAGCCAGCTTCTTGAGCCAGGTGTAAGTGCCCCAGGTCACGCCAAt                         <  4:46664/149‑1 (MQ=255)                                                                                                                              gcgATACCCGCCACAGGCGTGCTCACCCACAGGATCAGCGGCATCAGCAGCACGCCCAGCACGAGCGACTCCAGAAACAGGCCCGACCACGGAGGCAGTCGAGCCAGCTTCTTGAGCCAGGTGTAAGTGCCCCAGGTCACGCCAATGAc                      <  8:292658/149‑1 (MQ=255)                                                                                                                                    cccGCCACAGGCGTGCTCACCCACAGGATCAGCGGCATCAGCAGCACGCCCAGCACGAGCGACTCCAGAAACAGGCCCGACCACGGAGGCAGTCGAGCCAGCTTCTTGAGCCAGGTGTAAGTGCCCCAGGTCACGCCAATGACCAGGaa                >  4:155672/1‑149 (MQ=255)                                                                                                                                    cccGCCACAGGCGTGCTCACCCACAGGATCAGCGGCATCAGCAGCACGCCCAGCACGAGCGACTCCAGAAACAGGCCCGACCACGGAGGCAGTCGAGCCAGCTTCTTGAGCCAGGTGTAAGTGCCCCAGGTCACGCCAATGACCAGGa                 <  1:214045/148‑1 (MQ=255)                                                                                                                                    cccGCCACAGGCGTGCTCACCCACAGGATCAGCGGCATCAGCAGCACGCCCAGCACGAGCGACTCCAGAAACAGGCCCGACCACGGAGGCAGTCGAGCCAGCTTCTTGAGCCAGGTGTAAGTGCCCCAGGTCACGCCAATGACCAGGa                 <  3:38997/148‑1 (MQ=255)                                                                                                                                     ccGCCACAGGCGTGCTCACCCACAGGATCAGCGGCATCAGCAGCACGCCCAGCACGAGCGACTCCAGAAACAGGCCCGACCACGGAGGCAGTCGAGCCAGCTTCTTGAGCCAGGTGTAAGTGCCCCAGGTCCCGCCAATGACCAGGaa                >  1:351122/1‑148 (MQ=255)                                                                                                                                        ccACAGGCGTGCTCACCCACAGGATCAGCGGCATCAGCagcacgcctgtggcgggtatcgccgccctgggctccgctgacacggcgctgctgctgctttgcg                                                           >  7:32975‑M2/1‑38 (MQ=255)                                                                                                                                        ccACAGGCGTGCTCACCCACAGGATCAGCGGCATCAGCagcacgcctgtggcgggtatcgccgccctgggctccgctgacacggcgctgctgctgctttgcg                                                           <  8:32975‑M2/102‑65 (MQ=255)                                                                                                                                        ccACAGGCGTGCTCACCCACAGGATCAGCGGCATCAGCAGCACGCCCAGCACGAGCGACTCCAGAAACAGGCCCGACCACGGAGGCAGTCGAGCCAGCTTCTTGAGCCAGGTGTAAGTGCCCCAGGTCACGCCAATGACCAGGAACACt            >  2:61656/1‑149 (MQ=255)                                                                                                                                            aGGCGTGCTCACCCACAGGATCAGCGGCATCAGCagcacgcctgtggcgggtatcgccgccctgggctccgctgacacggcgctgctgctgctttgcggcgcagtttccctattgccgctggcgctcttttcgttcgctgcacggcggc        <  1:142135‑M2/149‑116 (MQ=255)                                                                                                                                             ggCGTGCTgctgatgccgctgatcctgtgggtgagcacgcctgtggcgggtatcgccgccctgggctccgctgacacggcgctgctgctgctttgcggcgcagtttccctattgccgctggcgctcttttcgttcgctgcacggcggct       <  7:292658‑M1/149‑142 (MQ=255)                                                                                                                                             ggCGTGCTgctgatgccgctgatcctgtgggtgagcacgcctgtggcgggtatcgccgccctgggctccgctgacacggcgctgctgctgctttgcggcgcagtttccctattgccgctggcgctcttttcgttcgctgcacggcggct       >  6:219242‑M1/1‑8 (MQ=255)                                                                                                                                                gTGCTCACCCACAGGATCAGCGGCATCAGCAGCACGCCCAGCACGAGCGACTCCAGAAACAGGCCCGACCACGGAGGCAGTCGAGCCAGCTTCTTGAGCCAGGTGTAAGTGCCCCAGGTCACGCCAATGACCAGGAACACTCGGCTGTc    >  7:229656/1‑149 (MQ=255)                                                                                                                                                 tgctgctgatgccgctgatcctgtgggtgagcacgcctgtggcgggtatcgccgccctgggctccgctgacacggcgctgctgctgctttgcggcgcagtttccctattgccgctggcgctcttttcgttcgctgcacggcggctgcct   <  7:259519‑M1/149‑146 (MQ=255)                                                                                                                                                  gCTCACCCACAGGATCAGCGGCATCAGCAGCACGCCCAGCACGAGCGACTCCAGACACAGGCCCGACCACGGAGGCAGTCGAGCCAGCTTCTTGAGCCAGGTGTAAGTGCCCCAGGTCACGCCAATGACCAGGAACACTCGGAGGTCCa  >  8:208393/1‑149 (MQ=255)                                                                                                                                                    |                                                                                                                                                   CGAACTGCATCAGCCCCATGACACTCAGAGGCAGCCGCCGTGCAGCGAACGAAAAGAGCGCCAGCGGCAATAGGGAAACTGCGCCGCAAAGCAGCAGCAGCGCCGTGTCAGCGGAGCCCAGGGCGGCGATACCCGCCACAGGCGTGCTCACCCACAGGATCAGCGGCATCAGCAGCACGCCCAGCACGAGCGACTCCAGAAACAGGCCCGACCACGGAGGCAGTCGAGCCAGCTTCTTGAGCCAGGTGTAAGTGCCCCAGGTCACGCCAATGACCAGGAACACTCGGCTGTCCA  >  NC_002947/4304465‑4304758

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.