New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4407585	58 (0.940)	5 (0.080)	5/254	NT	7.9%	coding (259/1299 nt)	PP_3889	putative Phage integrase
	?	NC_002947	= 4407635	62 (1.050)					coding (209/1299 nt)	PP_3889	putative Phage integrase

TCGGCAGATCGCCTAAGCACGGCCGCACATGCTGCCCAATTGCTGCGCGGGTGGCAGCCTTACGCTTTGCAGACAACGAGCGATCATGGCTCATGCGGTCGACATACCAGTCGAGCAGTTGGCCCACGGTGGCCATGCCCGACACTACCGGTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4407432‑4407585 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggtgcTGGCCGAGCTGCCCGCGCTGCGTCAGCGCCTGATGCGCCACCCGGCCACCGCACCGGTAGTGTCGGGCATGGCCACCGTGGGCCAACTGCTCGACTGGTATGTCGACCGCATGAGCCATGATCGCTCGTTGTCTGCAAAGCGTAAGG  <  NC_002947/4407635‑4407489                                                                                                                                                                                                                                                                                                               TCGGCAGATCGCCTAAGCACGGCCGCACATGCTGCCCAATTGCTGCGCGGGTGGCAGCCTTACGCTTTGCAGACAACGAGCGATCATGGCTCATGCGGTCGACATACCAGTCGAGCAGTTGGCCCACGGTGGCCATGCCCGAGACTACC                                                                                                                                                          >  8:5406/1‑149  CGGCAGCTCGCCTAAGCAGTGCCGCACATCCTGCCCAATTGCTCGGCGGGGGGCAGCCTTCCGCTTTCCCGACAACGCGCCATCTTGGCTCATGCGGTCGACATACCCGTCGAGCAGTTGGCCCACGGTGGCCATGCCCGACACTACCG                                                                                                                                                         <  8:315302/149‑1        ATCGCCTAAGCACGGCCGCACATGCTGCCCAATTGCTGCGCGGGTGGCAGCCTTACGCTTTGCAGACAACGAGCGATCATGGCTCATGCGGTCGACATACCAGTCGAGCAGTTGGCCCACGGTGGCCATGCCCGACACTACCGGTG                                                                                                                                                      <  1:50453/146‑1        ATCGCCTAAGCACGGCCGCACATGCTGCCCAATTGCTGCGCGGGTGGCAGCCTTACGCTTTGCAGACAACGAGCGATCATGGCTCATGCGGTCGACATACCAGTCGAGCAGTTGGCCCACGGTGGCCATGCCCGACACTACCGGTG                                                                                                                                                      >  2:50453/1‑146             CTAAGCACGGCCGCACATGCTGCCCAATTGCTGCGCGGGTGGCAGCCTTACGCTTTGCAGACAACGAGCGATCATGGCTCATGCGGTCGACATACCAGTCGAGCAGTTGGCCCACGGTGGCCATGCCCGACACTACCGGT                                                                                                                                                       >  1:273862/1‑140             CTAAGCACGGCCGCACATGCTGCCCAATTGCTGCGCGGGTGGCAGCCTTACGCTTTGCAGACAACGAGCGATCATGGCTCATGCGGTCGACATACCAGTCGAGCAGTTGGCCCACGGTGGCCATGCCCGACACTACCGGT                                                                                                                                                       <  2:273862/140‑1                                 TGCCCAATTGCTGCGCGGGTGGCAGCCTTACGCTTTGCAGACAACGAGCGATCATGGCTCATGCGGTCGACATACCAGTCGAGCAGTTGGCCCACGGTGGCCATGCCCGACACTACCGGTGCTGGCCGAGCTGCCCGCGCTGCGTCAGC                                                                                                                          >  8:62609/1‑149                                            TGCGCGGGTGGCAGCCTTACGCTTTGCAGACAACGAGCGATCATGGCTCATGCGGTCGACATACCAGTCGAGCAGTTGGCCCACGGTGGCCATGCCCGACACTACCGGTGCTGGCCGAGCTGCCCGCGCTGCGTCAGCGCCTGATGCGC                                                                                                               >  4:225981/1‑149                                                              ACGCTTTGCAGACAACGAGCGATCATGGCTCATGCGGTCGACATACCAGTCGAGCAGTTGGCCCACGGTGGCCATGCCCGACACTACCGGTGCTGGCCGAGCTGCCCGCGCTGCGTCAGCGCCTGATGCGCCACCCGGCCACCGCAC                                                                                               <  5:362464/147‑1                                                               CGCTTTGCAGACAACGAGCGATCATGGCTCATGCGGTCGACATACCAGTCGAGCAGTTGGCCCACGGTGGCCATGCCCGACACTACCGGTGCTGGCCGAGCTGCCCGCGCTGCGTCAGCGCCTGATGCGCCACCCGGCCACCGCACCG                                                                                             <  7:62609/148‑1                                                                 CTTTGCAGACAACGAGCGATCATGGCTCATGCGGTCGACATACCAGTCGAGCAGTTGGCCCACGGTGGCCATGCCCGACACTACCGGTGCTGGCCGAGCTGCCCGCGCTGCGTCAGCGCCTGATGCGCCACCCGGCCACCGCACCGGTA                                                                                          <  3:225981/149‑1                                                                                                                                                      GGTGCTGGCCGAGCTGCCCGCGCTGCGTCAGCGCCTGATGCGCCACCCGGCCACCGCACCGGTAGTGTCGGGCATGGCCACCGTGGGCCAACTGCTCGACTGGTATGTCGACCGCATGAGCCATGATCGCTCGTTGTCTGCAAAGCGTA     <  2:179295/149‑1                                                                                                                                                       GTGCTGGCCGAGCTGCCCGCGCTGCGTCAGCGCCTGATGCGCCACCCGGCCACCGCACCGGTAGTGTCGGGCATGGCCACCGTGGGCCAACTGCTCGACTGGTATGTCGACCGCATGAGCCATGATCGCTCGTTGTCTGCAAAGCGTAA    <  6:149898/149‑1                                                                                                                                                          CTGGCCGAGCTGCCCGCGCTGCGTCAGCGCCTGATGCGCCACCCGGCCACCGCACCGGTAGTGTCGGGCATGGCCACCGTGGGCCAACTGCTCGACTGGTATGTCGACCGCATGAGCCATGATCGCTCGTTGTCTGCAAAGCGTAAGG  <  1:347174/148‑1                                                                                                                                                                                                                                                                                                               TCGGCAGATCGCCTAAGCACGGCCGCACATGCTGCCCAATTGCTGCGCGGGTGGCAGCCTTACGCTTTGCAGACAACGAGCGATCATGGCTCATGCGGTCGACATACCAGTCGAGCAGTTGGCCCACGGTGGCCATGCCCGACACTACCGGTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4407432‑4407585 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggtgcTGGCCGAGCTGCCCGCGCTGCGTCAGCGCCTGATGCGCCACCCGGCCACCGCACCGGTAGTGTCGGGCATGGCCACCGTGGGCCAACTGCTCGACTGGTATGTCGACCGCATGAGCCATGATCGCTCGTTGTCTGCAAAGCGTAAGG  <  NC_002947/4407635‑4407489

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.