| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 4700127 = | 65 (1.050) | 3 (0.050) | 3/246 | NT | 5.1% | coding (561/2655 nt) | kdpD | sensor protein |
| ? | NC_002947 | 4700178 = | 52 (0.910) | coding (510/2655 nt) | kdpD | sensor protein | |||||
TGTACACCACGGTCAACGTCCAGCACCTGGAAAGCCTCAACGACAAGGTCCGCGACATTACCGGCGTGCAAGTGCGCGAGACCCTGCCGGACTGGGTGCTGCAGGAAGCGTTCGAGCTGGTGCTGATCGACCTGCCTCCGCGAGAGCTGCTCGAACGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/4700284‑4700127‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gctcgaacgcTTCCTGCAGCACCCAGTCCGGCAGGGTCTCGCGCACTTGCACGCCGGTAATGTCGCGGACCTTGTCGTTGAGGCTTTCCAGGTGCTGGACGTTGACCGTGGTGTACACGTCGATGCCCGCGGCCAAGAGTTCTTGCACATCCT > NC_002947/4700178‑4700320 TGTACACCACGGTCAACGTCCAGCACCTGGAAAGCCTCAACGACAAGGTCCGCGACATTACCGGCGTGCAAGTGCGCGAGACCCTGCCGGACTGGGTGCTGCAGGAAGCGTTCGAGCTGGTGCTGATCGACCTGCCTCCGCGAGAGCTG < 7:284839/149‑1 CACCACGGTCATCGTCCAGCACCTGGAAAGCCTCAACGACAAGGTCCGCGACATTACCGGCGTGCAAGTGCGCGAGACCCTGCCGGACTGGGTGCTGCAGGAAGCGTTCGAGCTGGTGCTGATCTACCTGCCTCCGCGAGAGCTGCTC < 7:58828/148‑1 CCACGGTCAACGTCCAGCACCTGGAAAGCCTCAACGACAAGGTCCGCGACATTACCGGCGTGCAAGTGCGCGAGACCCTGCCGGACTGGGTGCTGCAGGAAGCGTTCGAGCTGGTGCTGATCGACCTGCCTCCGCGAGAGCTGCTCGAA > 2:98308/1‑149 CACGGGCAACGTCCAGCACCTGGAAAGCCTCAACGACAAGGTCCGCGACATTACCGGCGTGCAAGTGCGCGAGACCCTGCCGGACTGGGTGCTGCAGGAAGCGTTCGAGCTGGTGCTGATCGACCTGCCTCCGCGAGAGCTGCTCGAAC < 7:176227/149‑1 CGGTCAACGTCCAGCACCTGGAAAGCCTCAACGACAAGGTCCGCGACATTACCGGCGTGCAAGTGCGCGAGACCCTGCCGGACTGGGTGCTGCAGGAAGCGTTCGAGCTGGTGCTGATCGACCTGCCTCCGCGAGAGCTGCTCGAACGC < 8:19122/149‑1 GCGACATTACCGGCGTGCAAGTGCGCGAGACCCTGCCGGACTGGGTGCTGCAGGAAGCGTTCGAGCTGGTGCTGATCGACCTGCCTCCGCGAGAGCTGC < 7:257978/99‑1 GCGACATTACCGGCGTGCAAGTGCGCGAGACCCTGCCGGACTGGGTGCTGCAGGAAGCGTTCGAGCTGGTGCTGATCGACCTGCCTCCGCGAGAGCTGC > 8:257978/1‑99 GCGTTCGAGCTGGTGCTGATCGACCTGCCTCCGCGAGAGCTGCTCGAACGCTTCCTGCAGCACCCAGTCCGGCAGGGTCTCGCGCACTTGCACGCCGGTAATGTCGCGGACCTTGTCGTTGAGGCTTTCCAG > 7:264280/1‑132 GCGTTCGAGCTGGTGCTGATCGACCTGCCTCCGCGAGAGCTGCTCGAACGCTTCCTGCAGCACCCAGTCCGGCAGGGTCTCGCGCACTTGCACGCCGGTAATGTCGCGGACCTTGTCGTTGAGGCTTTCCAG < 8:264280/132‑1 GTTCGAGCTGGTGCTGATCGACCTGCCTCCGCGAGAGCTGCTCGAACGCTTCCTGCAGCACCCAGTCCGGCAGGGTCTCGCGCACTTGCACGCCGGTAATGTCGCGGACCTTGTCGTTGAGGCTTTCCAGGTGCTGGACGTTGACCGTG > 4:31203/1‑149 TCGAACGCTTCCTGCAGCACCCAGTCCGGCAGGGTCTCGCGCACTTGCACGCCGGTAATGTCGCGGACCTTGTCGTTGAGGCTTTCCAGGTGCTGGACGTTGACCGTGGTGTACACGTCGATGCCCGCGGCCAAGAGTTCTTGCACATC > 6:41289/1‑149 GAACGCTTCCTGCAGCACCCAGTCCGGCAGGGTCTCGCGCACTTGCACGCCGGTAATGTCGCGGACCTTGTCGTTGAGGCTTTCCAGGTGCTGGACGTTGACCGTGGTGTACACGTCGATGCCCGCGGCCAAGAGTTCTTGCACATCCT > 5:17599/1‑149 TGTACACCACGGTCAACGTCCAGCACCTGGAAAGCCTCAACGACAAGGTCCGCGACATTACCGGCGTGCAAGTGCGCGAGACCCTGCCGGACTGGGTGCTGCAGGAAGCGTTCGAGCTGGTGCTGATCGACCTGCCTCCGCGAGAGCTGCTCGAACGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/4700284‑4700127‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gctcgaacgcTTCCTGCAGCACCCAGTCCGGCAGGGTCTCGCGCACTTGCACGCCGGTAATGTCGCGGACCTTGTCGTTGAGGCTTTCCAGGTGCTGGACGTTGACCGTGGTGTACACGTCGATGCCCGCGGCCAAGAGTTCTTGCACATCCT > NC_002947/4700178‑4700320 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |