| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 4893553 = | 40 (0.650) | 5 (0.100) | 4/212 | NT | 17.0% | intergenic (+28/‑180) | pyk/PP_4302 | pyruvate kinase/urea transporter |
| ? | NC_002947 | 4893632 = | 17 (0.340) | intergenic (+107/‑101) | pyk/PP_4302 | pyruvate kinase/urea transporter | |||||
AGTCAGTGGAGGTTGATGGGGGAGCGGTGGGCCTCTTTGGGCCTCGGTTTTCCGCGGTCGGGTAGAGCGGTATTCAGGGAGGGCTTTGCCCTCCAATCGCGACACAAGGCCGCTCCCACAGGGACTGCATTCCCTTGTGCCAGCGTGGCCCTGTGGGAGCGGCCTTGTGTCGCGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/4893727‑4893553‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccctgtgggagcggccttgtgtcgcgaTTGGAGGGCAAAGCCCTCCCTGAATACCGCTCTACCCGACCGCGGAAAACCGAGGCCCAAAGAGGCCCACCGCTCCCCCATCAA‑CCTCCACTGACTGCCCCATGTACACCAAAAATTTCGTCAACCCGTGCCCCGACTGGGCCACGG > NC_002947/4893632‑4893778 AGTCAGTGGAGGTTGATGGGGGAGCGGTGGGCCTCTTTGGGCCTCGGTTTTCCGCGGTCGGGTAGAGCGGTATTCAGGGAGGGCTTTGCCCTCCAATCGCGACACAAGGCCGCTCCCACAGGGACTGCATTCCCTTGTGCCAGCGTGGC > 4:244830/1‑149 GAGGTTGATGGGGGAGCGGTGGGCCTCTTTGGGCCTCGGTTTTCCGCGGTCGGGTAGAGCGTTATTCAGGGAGGGCTTTGCCCTCCAATCGCGACACAAGGCCGCTCCCACAGGGACTGCATTCCCTTGTGCCAGCGTGGCCCTGTGG < 2:316833/148‑1 GTTGATGGGGGAGCGGTGGGCCTCTTTGGGCCTCGGTTTTCCGCGGTCGGGTAGAGCGGTATTCAGGGAGGGCTTTGCCCTCCAATCGCGACACAAGGCCGCTCCCACAGGGACTGCATTCCCTTGTGCCAGCGTGGCCCTGTGGGAGC < 3:244830/149‑1 GATGGGGGAGCGGTGGGCCTCTTTGGGCCTCGGTTTTCCGCGGTCAGGTAGAGCGGTATTCAGGGAGGGCTTTGCCCTCCAATCGCGACACAAGGCCGCTCCCACAGGGACTGCATTCCCTTGTGCCAGCGTGGCCCTGTGGGAGCGG < 7:333556/148‑1 agGGGGGAGCGGTGGGCCTCTTTGGGCCTCGGGTTTCCGCGGTCGGGTAGAGCGGTATTCAGGGAGGGCTTTGCCCGCCAATCGCGACACAAGGCCGCTCCCACAGGGACTGCATTCCCTTGTGCCAGCGTGGCCCTGTGGGAGCGGCC < 7:142020/147‑1 GGGGGCGCGGGGGGCCTCTTTGGGCCGCGGTTTTCCGCGGTCGGGTAGAGCGGTATTCAGGGAGGGCTTTGCCCTCCAATCGCGACACAAGGCCGCTCCCACAGGGACTGCATTCCCTTGTGCCAGCGTGGCCCTGTGGGAGCGGCCTT < 8:334010/149‑1 GGGGGAGCGGTGGGCCTCTTTGGGCCTCGGTTTTCCGCGGTCGGGTAGAGCGGTATTCAGGGAGGGCTTTGCCCTCCAATCGCGACACAAGGCCGCTCCCACAGGGACTGCATTCCCTTGTGCCAGCGTGGCCCTGTGGGAGCGGCCTT > 1:130349/1‑149 GGGGAGCGGTGGGCCTCTTTGGGCCTCGGTTTTCCGCGGTCGGGTAGAGCGGTATTCAGGGAGGGCTTTGCCCTCCAATCGCGACACAAGGCCGCTCCCACAGGGACTGCATTCCCTTGTGCCAGCGTGGCCCTGTGGGAGCGGCCTTG > 4:31953/1‑149 GCGGTGGGCCTCTTTGGGCCTCGGTTTTCCGCGGTCGGGTAGAGCGGTATTCAGGGAGGGCTTTGCCCTCCAATCGCGACACAAGGCCGCTCCCACAGGGACTGCATTCCCTTGTGCCAGCGTGGCCCTGTGGGAGCGGCCTTGTGTCG < 2:130349/149‑1 CGGTGGGCCTCTTTGGGCCTCGGTTTTCCGCGGTCGGGTAGAGCGGTATTCAGGGAGGGCTTTGCCCTCCAATCGCGACACAAGGCCGCTCCCACAGGGACTGCATTCCCTTGTGCCAGCGTGGCCCTGTGGGAGCGGCCTT < 5:123061/142‑1 CGGTGGGCCTCTTTGGGCCTCGGTTTTCCGCGGTCGGGTAGAGCGGTATTCAGGGAGGGCTTTGCCCTCCAATCGCGACACAAGGCCGCTCCCACAGGGACTGCATTCCCTTGTGCCAGCGTGGCCCTGTGGGAGCGGCCTT > 6:123061/1‑142 CAGGGAGGGCTTTGCCCTCCAATCGCGACACAAGGCCGCTCCCACAGGGACTGCATTCCCTTGTGCCAGCGTGGCCCTGTGGGAGCGGCCTT > 4:189982/1‑92 ACACATGGGCGCCCCCACCGGGACTGCATTCCGTTGTGCCCGCGTGGCCGTGTGGGAGCGGCCTTGTGGCGCGATTGGAGGGCAAAGCCCTCCCTGAATACCGCTCTACCCGACCGCGGAAAACCt < 4:336353/126‑2 ACACAAGGCCGCTCCCACAGGGACTGCATTCCCTTGTGCCAGCGTGGCCCTGTGGGAGCGGCCTTGTGTCGCGATTGGAGGGCAAAGCCCTGCCTGAATACCGCTCTACCCGACCGCGGAAAACCG > 3:336353/1‑126 CCACAGGGACTGCATTCCCTTGTGCCAGCGTGGCCCTGTGGGAGCGGCCTTGTGTCGCGATTGGAGGGCAAAGCCCTCCCTGAATACCGCTCTACCCGACCGCGGAAAACCGAGGCCCAAAGAGGCCCACCGCTCCCCCATCAA‑CCTC > 3:1281/1‑148 CACAGGGACTGCATTCCCTTGTGCCAGCGTGGCCCTGTGGGAGCGGCCTTGTGTCGCGATTGGAGGGCAAAGCCCTCCCTGAATACCGCTCTACCCGACCGCGGAAAACCGAGGCCAAAAGAGGCCCACCGCTCCCCCATCAA‑CCTCCA > 6:270774/1‑149 CCCTTGTGCCAGCGTGGCCCTGTGGGAGCGGCCTTGTGTCGCGATTGGAGGGCAAAGCCCTCCCTGAATACCGCTCTACCCGACCGCGGAAAACCGAGGCCCAAAGAGGCCCACCGCTCCCCCATCAA‑CCTCCACTGACTGCCCCATG < 5:270774/148‑1 CCCTGTGGGAGCGGCCTTGTGTCGCGATTGGAGGGCAAAGCCCTCCCTGAATACCGCTCTACCCGCCCGCGGAAAACCGAGGCCCAAAGAGGCCCCCCGCGCCCCCATCCA‑CCTCCCCTGCCTGCCCCATGTACACGCAAAATTTCGTC > 8:157718/1‑149 CTGTGGGAGCGGCCTTGTGTCGCGATTGGAGGGCAAAGCCCTCCCTGAATACCGCTCTACCCGACCGCGGAAAACCGAGGCCCAAAGAGGCCCACCGCTCCCCCATCAA‑CCTCCACTGACTGCCCCATGTACACCAAAAATTTCGTCAA > 3:10051/1‑149 TCGCGATTGGAGGGCAAAGCCCTCCCTGAATACCGCTCTACCCGACCGCGGAAAACCGAGGCCCAAAGAGGCCCACCGCTCCCCCATCAA‑CCTCCACTGACTGCCCCATGTACACCAAAAATTTCGTCAACCCGTGCCCCGACTGGGC < 7:262051/148‑1 TCGCGATTGGAGGGCAAAGACCTCCCTGAATACCGCTCTACCAGACCCCGGAAAACCGAGGCCCAAAGAGGCCCACCGCTCCCCCATCAA‑CCTCCACTGACTGCCCCATGTACACCAAAAATTTCGTCAACCCGTGCCCCGACTGTGC > 1:28891/1‑148 ggGATTGGATGGCAAAGCCCTCCCTTAATACCGCTCTACCCGACCGCGGAAAACCGACGCCCAAAGCCGCCCACCGCTCCCCCATCAACCCTCCACTGACTGCCCCATGTACACCAAAAATTTCGTCAACCCGTGCCCCGACTGGGCCA < 1:305538/147‑1 GATTGGAGGGCAAAGCCCTCCCTGAATACCGCTCTACCCGACCGCGGAAAACCGAGGCCCAAAGAGGCCCACCGCTCCCCCATCAA‑CCTCCACTGACAGCCCCATGTACACCAAAAATTTCGTCAACCCGTGCCCCGACTGGGCCACGG > 1:311132/1‑149 AGTCAGTGGAGGTTGATGGGGGAGCGGTGGGCCTCTTTGGGCCTCGGTTTTCCGCGGTCGGGTAGAGCGGTATTCAGGGAGGGCTTTGCCCTCCAATCGCGACACAAGGCCGCTCCCACAGGGACTGCATTCCCTTGTGCCAGCGTGGCCCTGTGGGAGCGGCCTTGTGTCGCGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/4893727‑4893553‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccctgtgggagcggccttgtgtcgcgaTTGGAGGGCAAAGCCCTCCCTGAATACCGCTCTACCCGACCGCGGAAAACCGAGGCCCAAAGAGGCCCACCGCTCCCCCATCAA‑CCTCCACTGACTGCCCCATGTACACCAAAAATTTCGTCAACCCGTGCCCCGACTGGGCCACGG > NC_002947/4893632‑4893778 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |