| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 4893553 = | 40 (0.650) | 5 (0.100) | 4/212 | NT | 17.0% | intergenic (+28/‑180) | pyk/PP_4302 | pyruvate kinase/urea transporter |
| ? | NC_002947 | 4893632 = | 17 (0.340) | intergenic (+107/‑101) | pyk/PP_4302 | pyruvate kinase/urea transporter | |||||
CTGGAGATTGCCCAGGCGCAAGGCATGGCCAGCCGTGGCGACACGCTGCTGATCACCGCTGGCGTGCCTTTCGGCAAGC‑CGGGTACGACTAACACGCTGCGGATCGAG‑A‑CTTTGATCTGA‑GATTGCCGGGGGCGCGTTGCGCCCCTTTCGCGACACAAGGCCGCTCCCACAGGGCCACGCTGGCACAA‑GGGAATGCAGTCCCTGTGGGAGCGGCCTTGTGTCGCGATTGGAGGGCAAAGCCCTCCCTGAATACCGCTCTACCCGACCGCGGAAAACCGAGGC > NC_002947/4893406‑4893687 | cTGGAGATTGCCCAGGCGCAAGGCATGGCCAGCCGTGGCGACACGCTGCTGATCACCGCTGGCGTGCCTTTCGGCAAGC‑CGGGTACGACTAACACGCTGCGGATCGAG‑A‑CTTTGATCTGA‑GATTGCCGGGGGCGCGTTGCGCCCCTTTc > 4:227607/1‑149 (MQ=255)cTGGAGATTGCCCAGGCGCAAGGCATGGCCAGCCGTGGCGACACGCTGCTGATCACCGCTGGCGTGCCTTTCGGCAAGC‑CGGGTACGACTAACACGCTGCGGATCGAG‑A‑CTTTGATCTGA‑GATTGCCGGGGGCGCGTTGCGCCCCTTTc > 2:314199/1‑149 (MQ=255) gagaTTGCCCAGGCGCAAGGCATGGCCAGCCGTGGCGACACGCTGCTGATCACCGCTGGCGTGCCTTTCGGCAAGC‑CGGGTACGACTAACACGCTGCGGATCGAG‑A‑CTTTGATCTGA‑GATTGCCGGGGGCGCGTTGCGCCCCTTTcgc < 1:18770/148‑1 (MQ=255) gagaTTGCCCAGGCGCAAGGCATGGCCAGCCGTGGCGACACGCTGCTGATCACCGCTGGCGTGCCTTTCGGCAAGC‑CGGGTACGACTAACACGCTGCGGATCGAG‑A‑CTTTGATCTGA‑GATTGCCGGGGGCGCGTTGCGCCCCTTTcgc < 2:217502/148‑1 (MQ=255) gagaTTGCCCAGGCGCAAGGCATGGCCAGCCGTGGCGACACGCTGCTGATCACCGCTGGCGTGCCTTTCGGCAAGC‑CGGGTACGACTAACACGCTGCGGATCGAG‑A‑CTTTGATCTGA‑GATTGCCGGGGGCGCGTTGCGCCCCTTTcgc < 3:322203/148‑1 (MQ=255) ccgtggcccagtcggggcacgggttgacgaaatttttggtgtacatggggctgtcagtggaggttgatgggggagcggtgggcctctttgggcctcggttttccgcggtcgggtagagcggtattcagggagggctttgccctccaaTc > 1:311132‑M1/148‑149 (MQ=255) tggcccagtcggggcacgggttgacgaaatttttggtgtacatggggcagtcagtggagggttgatgggggagcggtgggcggctttgggcgtcggttttccgcggtcgggtagagcggtattaagggagggctttgccatccaatccc < 1:305538‑M1/4‑3 (MQ=255) gcccagtcggggcacgggttgacgaaatttttggtgtacatggggcagtcagtggaggttgatgggggagcggtgggcctctttgggcctcggttttccgcggtcgggtagagcggtattcagggagggctttgccctccaaTCGCGa < 7:262051‑M1/6‑1 (MQ=255) gcacagtcggggcacgggttgacgaaatttttggtgtacatggggcagtcagtggaggttgatgggggagcggtgggcctctttgggcctcggttttccggggtctggtagagcggtattcagggaggtctttgccctccaaTCGCGa > 1:28891‑M1/143‑148 (MQ=255) cccAGGCGCAAGGCATGGCCAGCCGTGGCGACACGCTGCTGATCACCGCTGGCGTGCCTTTCGGCAAGC‑CGGGTACGACTAACACGCTGCGGATCGAG‑A‑CTTTGATCTGA‑GATTGCCGGGGGCGCGTTGCGCCCCTTTCGCGACACAAg > 1:68368/1‑149 (MQ=255) cAGGCGCAAGGCATGGCCAGCCGTGGCGACACGCTGCTGATCACCGCTGGCGTGCCTTTCGGCAAGC‑CGGGTACGACTAACACGCTGCGGATCGAG‑A‑CTTTGATCTGA‑GATTGCCGGGGGCGCGTTGCGCCCCTTTCGCGACACAAGGc > 5:244397/1‑149 (MQ=255) ggCATGGCCAGCCGTGGCGACACGCTGCTGATCACCGCTGGCGTGCCTTTCGGCAAGC‑CGGGTACGACTAACACGCTGCGGATCGAG‑A‑CTTTGATCTGA‑GATTGCCGGGGGCGCGTTGCGCCCCTTTCGCGACACAAGGCCGCTCCca > 6:283387/1‑148 (MQ=255) ggCATGGCCAGCCGTGGCGACACGCTGCTGATCACCGCTGGCGTGCCTTTCGGCAAGC‑CGGGTACGACTAACACGCTGCGGATCGAG‑A‑CTTTGATCTGA‑GATTGCCGGGGGCGCGTTGCGCCCCTTTCGCGACACAAGGCCGCTCCca > 4:114995/1‑148 (MQ=255) cATGGCCAGCCGTGGCGACACGCTGCTGATCACCGCTGGCGTGCCTTTCGGCAAGCACGGGTACGACTAACACGCTGCGGATCGAG‑A‑CTTTGATCTGA‑GATTGCCGGGGGCGCGTTGCGCCCCTTTCGCGACACAAGGCCCCTcccc > 1:300336/1‑146 (MQ=255) ttgacgaaatttttggtgtacatggggcagtcagtggaggttgatgggggagcggtgggcctctttgggcctcggttttccgcggtcgggtagagcggtattcagggagggctttgccctccaaTCGCGACACAAGGCCGCTCCCACAg > 3:10051‑M1/125‑149 (MQ=255) gCCAGCCGTGGCGACACGCTGCTGATCACCGCTGGCGTGCCTTTCGGCAAGC‑CGGGTACGACTAACACGCTGCGGATCGAGCATCTTTGATCTGA‑GATTGCCGGGGGCGCGTTGCGCCCCTTTCGCGACACAAGGCCGCTCCCACAggg < 1:116178/149‑1 (MQ=255) gCCAGCCGTGGCGACACGCTGCTGATCACCGCTGGCGTGCCTTTCGGCAAGC‑CGGGTACGACTAACACGCTGCGGATCGAG‑A‑CTTTGATCTGA‑GATTGCCGGGGGCGCGTTGCGCCCCTTTCGCGACACAAGGCCGCTCCCACAggga < 7:174722/148‑2 (MQ=255) ccAGCCGTGGCGACACGCTGCTGATCACCGCTGGCGTGCCTTTCGGCAAGC‑CGGGTACGACTAACACGCTGCGGATCGAG‑A‑CTTTGATCTGACGATTGCCGGGGGCGCGTTGCGCCCCTTTCGCGACACAAGGCCGCTCCCACAGGGcc < 1:106081/149‑1 (MQ=255) gacgaaattttgcgtgtacatggggcaggcaggggaggtggatgggggcgcggggggcctctttgggcctcggttttccgcgggcgggtagagcggtattcagggagggctttgccctccaaTCGCGACACAAGGCCGCTCCCACAggg > 8:157718‑M1/123‑149 (MQ=255) gTGGCGACACGCTGCTGATCACCGCTGGCGTGCCTTTCGGCAAGC‑CGGGTACGACTAACACGCTGCGGATCGAG‑A‑CTTTGATCTGA‑GATTGCCGGGGGCGCGTTGCGCCCCTTTCGCGACACAAGGCCGCTCCCACAGGGCCACGCTgg > 7:115223/1‑149 (MQ=255) gTGGCGACACGCTGCTGATCACCGCTGGCGTGCCTTTCGGCAAGC‑CGGGTACGACTAACACGCTGCGGATCGAG‑A‑CTTTGATCTGA‑GATTGCCGGGGGCGCGTTGCGCCCCTTTCGCGACACAAGGCCGCTCCCACAGGGCCACGCTgg < 5:143041/149‑1 (MQ=255) gTGGCGACACGCTGCTGATCACCGCTGGCGTGCCTTTCGGCAAGC‑CGGGTACGACTAACACGCTGCGGATCGAG‑A‑CTTTGATCTGA‑GATTGCCGGGGGCGCGTTGCGCCCCTTTCGCGACACAAGGCCGCTCCCACAGGGCCACGCTgg < 5:283387/149‑1 (MQ=255) acacGCTGCTGATCACCGCTGGCGTGCCTTTCGGCAAGC‑CGGGTACGACTAACACGCTGCGGATCGAG‑A‑CTTTGATCTGA‑GATTGCCGGGGGCGCGTTGCGCCCCTTTCGCGACACAAGGCCGCTCCCACAGGGCCACGCTGGCACAA‑g > 6:393385/1‑149 (MQ=255) cacGCTGCTGATCACCGCTGGCGTGCCTTTCGGCAAGC‑CGGGTACGACTAACACGCTGCGGATCGAG‑A‑CTTTGATCTGA‑GATTGCCGGGGGCGCGTTGCGCCCCTTTCGCGACACAAGGCCGCTCCCACAGGGCCACGCTGGCACAA‑gg < 2:84176/149‑1 (MQ=255) catggggcagtcagtggaggttgatgggggagcggtgggcctctttgggcctcggttttccgcggtcgggtagagcggtattcagggagggctttgccctccaaTCGCGACACAAGGCCGCTCCCACAGGGCCACGCTGGCACAA‑ggg < 5:270774‑M1/44‑1 (MQ=255) ctgATCACCGCTGGCGTGCCTTTCGGCAAGC‑CGGGTACGACTAACACGCTGCGGATCGAG‑A‑CTTTGATCTGA‑GATTGCCGGGGGCGCGTTGCGCCCCTTTCGCGACACAAGGCCGCTCCCACAGGGCCACGCTGGCACAA‑GGGAATGCa < 7:326427/149‑1 (MQ=255) tCACCGCTGGCGTGCCTTTCGGCAAGC‑CGGGTACGACTAACACGCTGCGGATCGAG‑A‑CTTTGATCTGA‑GATTGCCGGGGGCGCGTTGCGCCCCTTTCGCGACACAAGGCCGCTCCCACAGGGCCACGCTGGCACAA‑GGGAATGCAGTcc < 2:68368/149‑1 (MQ=255) aCCGCTGGCGTGCCTTTCGGCAAGC‑CGGGTACGACTAACACGCTGCGGATCGAG‑A‑CTTTGATCTGA‑GATTGCCGGGGGCGCGTTGCGCCCCTTTCGCGACACAAGGCCGCTCCCACAGGGCCACGCTGGCACAA‑GGGAATGCAGTccc < 3:227607/148‑1 (MQ=255) cTGGCGTGCCTTTCGGCAAGC‑CGGGTACGACTAACACGCTGCGGATCGAG‑A‑CTTTGATCTGA‑GATTGCCGGGGGCGCGTTGCGCCCCTTTCGCGACACAAGGCCGCTCCCACAGGGCCACGCTGGCACAA‑GGGAATGCAGTCCCTGTgg < 3:144833/149‑1 (MQ=255) cTGGCGTGCCTTTCGGCAAGC‑CGGGTACGACTAACACGCTGCGGATCGAG‑A‑CTTTGATCTGA‑GATTGCCGGGGGCGCGTTGCGCCCCTTTCGCGACACAAGGCCGCTCCCACAGGGCCACGCTGGCACAA‑GGGAATGCAGTCCCTGTgg < 1:313576/149‑1 (MQ=255) ggCGTGCCTTTCGGCAAGC‑CGGGTACGACTAACACGCTGCGGATCGAG‑A‑CTTTGATCTGA‑GATTGCCGGGGGCGCGTTGCGCCCCTTTCGCGACACAAGGCCGCTCCCACAGGGCCACGCTGGCACAA‑GGGAATGCAGTCCCTGTGGGa < 6:244397/149‑1 (MQ=255) tggaggttgatgggggagcggtgggcctcttttggcctcggttttccgcggtcgggtagagcggtattcagggagggctttgccctccaaTCGCGACACAAGGCCGCTCCCACAGGGCCACGCTGGCACAA‑GGGAATGCAGTCCCtgtg > 6:270774‑M1/91‑149 (MQ=255) gCGTGCCTTTCGGCAAGC‑CGGGTACGACTAACACGCTGCGGATCGAG‑A‑CTTTGATCTGA‑GATTGCCGGGGGCGCGTTGCGCCCCTTTCGCGGCACAAGGCCGCAACCCCACGGCCCCGCGGGGCCAACGGGAAT‑CACTACCAGTGGGAg > 5:224676/1‑149 (MQ=255) gaggttgatgggggagcggtgggcctctttgggcctcggttttccgcggtcgggtagagcggtattcagggagggctttgccctccaaTCGCGACACAAGGCCGCTCCCACAGGGCCACGCTGGCACAA‑GGGAATGCAGTCCCTGTgg > 3:1281‑M1/89‑148 (MQ=255) gTGCCTTTCGGCAAGC‑CGGGTACGACTAACACGCTGCGGATCGAG‑A‑CTTTGATCTGA‑GATTGCCGGGGGCGCGTTGCGCCCCTTTCGCGACACAAGGCCGCTCCCACAGGGCCACGCTGGCACAA‑GGGAATGCAGTCCCTGTGGGAGCg < 2:182782/149‑1 (MQ=255) gTGCCTTTCGGCAAGC‑CGGGTACGACTAACACGCTGCGGATCGAG‑A‑CTTTGATCTGA‑GATTGCCGGGGGCGCGTTGCGCCCCTTTCGCGACACAAGGCCGCTCCCACAGGGCCACGCTGGCACAA‑GGGAATGCAGTCCCTGTGGGAGCg > 3:31953/1‑149 (MQ=255) ccTTTCGGCAAGC‑CGGGTACGACTAACACGCTGCGGATCGAG‑A‑CTTTGATCTGA‑GATTGCCGGGGGCGCGTTGCGCCCCTTTCGCGACACAAGGCCGCTCCCACAGGGCCACGCTGGCACAA‑GGGAATGCAGTCCCTGTGGGAGCGGcc < 3:114995/149‑1 (MQ=255) ttCGGCAAGC‑CGGGTACGACTAACACGCTGCGGATCGAG‑A‑CTTTGATCTGA‑GATTGCCGGGGGCGCGTTGCGCCCCTTTCGCGACACAAGGCCGCGCCCACAGGGCCCCGCTGGCACAA‑CGGAATGCAGTCCCTGTGGGAGGGGCCGtg > 5:213930/1‑149 (MQ=39) cGGCAAGC‑CGGGTACGACTAACACGCTGCGGATCGAG‑A‑CTTTGATCTGA‑GATTGCCGGGGGCGCGTTGCGCCCCTTTCGCGACACAAGGCCGCTCCCACAGGGCCACGCTGGCACAA‑GGGAATGCAGTCCCTGTGGGAGCGGCCTtgt < 6:180972/148‑1 (MQ=255) ggCAAGC‑CGGGGACGACTAACACGCTGCGGATCGAG‑A‑CTTTGATCTGA‑GATTGCCGGGGGCGCGTTGCGCCCCTTTCGCGACACAAGGCCGCTCCCACAGGGCCACGCTGGCACAA‑GGGAATGCAGTCCCTGTGGGAGCGGCCTTgtgt < 5:204066/149‑1 (MQ=255) aGC‑CGGGTACGACTAACACGCTGCGGATCGAG‑A‑CTTTGATCTGA‑GATTGCCGGGGGCGCGTTGCGCCCCTTTCGCGACACAAGGCCGCTCCCACAGGGCCCCGCTGGCACAA‑GGGGATGCAGTGCCGGTGGGGGCGGCCGTGTGTcggg > 4:278068/1‑147 (MQ=38) gTACGACTAACACGCTGCGGATCGAG‑A‑CTTTGATCTGA‑GATTGCCGGGGGCGCGTTGCGCCCCTTGCGCGACACACGGCCGCTCCCACAGGGCCACGCTGGCACAA‑GGGAATGCAGTCCCTGTGGGAGCGGCCTTGTGTCGCGATTGGa < 3:278068/149‑1 (MQ=255) cGACTAACACGCTGCGGATCGAG‑A‑CTTTGATCTGA‑GATTGCCGGGGGCGCGTTGCGCCCCTTTCGCGACACAAGGCCGCTCCCACAGGGCCACGCTGGCACAA‑GGGAATGCAGTCCCTGTGGGAGCGGCCTTGTGTCGCGATTGGAggg < 2:300336/149‑1 (MQ=255) cggttttccgcggtcgggtagagcggtattcaggcagggctttgccctccaaTCGCGACACAAGGCCGCTCCCACAGGGCCACGCTGGCACAA‑GGGAATGCAGTCCCTGTGGGAGCGGCCTTgtgt > 3:336353‑M1/53‑126 (MQ=255) aggttttccgcggtcgggtagagcggtattcagggagggctttgccctccaaTCGCGCCACAAGGCCGCTCCCACACGGCCACGCGGGCACAA‑CGGAATGCAGTCCCGGTGGGGGCGCCCATgtgt < 4:336353‑M1/74‑1 (MQ=255) cGGAGCGAG‑A‑CTTTGATCGTC‑TATTGCCGGGGGCGCGTGGCGCCCCTTTCGCCACACACGCCCGCCCCCCCCGGGCCACGCTGCCACAA‑GGGAATGCCGGCCCTGTGGGAGCGGCCTTGTGTCGCGATTGGAGGGCAAAGCCCTCCCTg < 6:213930/149‑1 (MQ=25) ggATCTTG‑A‑ATTTGATCTGA‑GATTGCCGGGGGCGCGTTGCGCCCCTTGCGCGACAAAAGGCCGCTCCCACCGGGCCACGCTGCCAAAT‑GGTAATGCAGCCCCTGGGGGAGCGGCTTTGTGTCGCGATTGGAGGGCAAAGCCCTCCCTGa < 6:224676/149‑1 (MQ=255) gATCGAG‑A‑CTTTGATCTGA‑GATTGCCGGGGGCGCGTTGCGCCCCTTTCGCGACACAAGGTCGCTCCCACAGGGCCACGCTGGCACAA‑GGCAATGCAGGCCCTGTGGGAGCGGCCTTGTGTCGCGATTGGAGGGCTTTGccctccaatcg < 1:314199/149‑6 (MQ=255) ccgatctGATCTGA‑GATTGCCGGGGGCGCGTTGCGCCCCTTTCGCGACACAAGCCCGCTCCCACCGGGCCACGCTGGCACAA‑GGGAATGCAGTCCCTGTGGGAGCGGCCTTGTGTCGCGATTGGAGGGCAAAGCCCTCCCTGAATACCg < 3:22392/143‑1 (MQ=255) a‑CTTTGATCTGA‑GATTGCCGGGGGCGCGTTGCGCCCCTTTCGCGACACAAGGCCGCTCCCAAAGGGCCACGCTGGCACAA‑GGGAATGCAGTCCCAGTGGGAGCGGCCGTGTGTCGCGATTGGAGGGc > 3:318593/1‑127 (MQ=255) aTCTGA‑GATTGCCGGGGGCGCGTTGCGCCCCTTTCGCGACACAAGGCCGCTCCCACAGGGCCCCGCTGGCCCAA‑GGGAATGCAGTGCCGGTGGGAGCGGCCTTGTGTGGCGCTTTGAGGGCAAACCCCTCCCAGAAAAACGcagatag > 4:22392/1‑142 (MQ=37) aTCTGA‑GATTGCCGGGGGCGCGTTGCGCCCCTTTCGCGACACAAGGCCGCTCCCACAGGGCCACGCTGGCACAA‑GGGAATGCAGTCCCTGTGGGAGCGGCCTTGTGTCGCGATTGGAGGGCAAAGCCCTCCCTGAATACCGCTCTAcc < 8:115223/148‑1 (MQ=255) tGA‑GATTGCCGGGGGCGCGTTGCGCCCCTTTCGCGACACAAGGCCGCTCCCACAGGGCCACGCTGGCACAA‑GGGAATGCAGTCCCTGTGGGAGCGGCCTTGTGTAGCGATTTGAGGGCAAAGCCCTCCCTGAATACCGCTCTACCCGAc > 2:305538/1‑149 (MQ=255) gCCGGGGGCGCGTTGCGCCCCTTTCGCGACACAAGGCCGCTCCCACAGGGCCACGCTGGCACAA‑GGGAATGCAGTCCCTGTGGGAGCGGCCTTGTGTCGCGATTGGAGGGCAAAGCCCTCCCTGAATACCGCTCTACCCGACCGCGGa > 7:195668/1‑148 (MQ=255) cgcgTTGCGCCCCTTTCGCGACACAAGGCCGCTCCCACAGGGCCACGCTGGCACAA‑GGGAATGCAGTCCCTGTGGGAGCGGCCTTGTGTCGCGATTGGAGGGCAAAGCCCTCCCTGAATACCGCTCTACCCGACCGCGGAAAACCGAgg < 5:393385/149‑1 (MQ=255) gcgTTGCGCCCCTTTCGCGACACAAGGCCGCTACCACAGGGCCACGCTGGCCCAA‑GGGAATGCAGTCCCTGTGGGAGCCGCCTTGTGTCGCGATTGGAGGGCAAACCCCTCCCTGAATACCGCTCTACCCCACCGCGGAAAACCCAGGc > 8:262051/1‑149 (MQ=255) | CTGGAGATTGCCCAGGCGCAAGGCATGGCCAGCCGTGGCGACACGCTGCTGATCACCGCTGGCGTGCCTTTCGGCAAGC‑CGGGTACGACTAACACGCTGCGGATCGAG‑A‑CTTTGATCTGA‑GATTGCCGGGGGCGCGTTGCGCCCCTTTCGCGACACAAGGCCGCTCCCACAGGGCCACGCTGGCACAA‑GGGAATGCAGTCCCTGTGGGAGCGGCCTTGTGTCGCGATTGGAGGGCAAAGCCCTCCCTGAATACCGCTCTACCCGACCGCGGAAAACCGAGGC > NC_002947/4893406‑4893687 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |