New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4893553 =	40 (0.650)	5 (0.100)	4/212	NT	17.0%	intergenic (+28/‑180)	pyk/PP_4302	pyruvate kinase/urea transporter
	?	NC_002947	4893632 =	17 (0.340)					intergenic (+107/‑101)	pyk/PP_4302	pyruvate kinase/urea transporter

GTACGACTAACACGCTGCGGATCGAGACTTTGATCTGAGATTGCCGGGGGCGCGTTGCGCCCCTTTCGCGACACAAGGCCGCTCCCACAGGGCCACGCTGGCACAAGGGAATGCAGTCCCTGTGGGAGCGGCCTTGTGTCGCGATTGGAGGGCAAAGCCCTCCCTGAATACCGCTCTACCCGACCGCGGAAAACCGAGGCCCAAAGAGGCCCACCGCTCCCCCATCAA‑CCTCCACTGACTGCCCCATGTACACCAAAAATTTCGTCAACCCGTGCCCCGACTGGGCCACGG  >  NC_002947/4893488‑4893778                                                                                                                                                 |                                                                                                                                                    gTACGACTAACACGCTGCGGATCGAGACTTTGATCTGAGATTGCCGGGGGCGCGTTGCGCCCCTTGCGCGACACACGGCCGCTCCCACAGGGCCACGCTGGCACAAGGGAATGCAGTCCCTGTGGGAGCGGCCTTGTGTCGCGATTGGa                                                                                                                                                 <  3:278068/149‑1 (MQ=255)    cGACTAACACGCTGCGGATCGAGACTTTGATCTGAGATTGCCGGGGGCGCGTTGCGCCCCTTTCGCGACACAAGGCCGCTCCCACAGGGCCACGCTGGCACAAGGGAATGCAGTCCCTGTGGGAGCGGCCTTGTGTCGCGATTGGAggg                                                                                                                                              <  2:300336/149‑1 (MQ=255)                  cGGAGCGAGACTTTGATCGTCTATTGCCGGGGGCGCGTGGCGCCCCTTTCGCCACACACGCCCGCCCCCCCCGGGCCACGCTGCCACAAGGGAATGCCGGCCCTGTGGGAGCGGCCTTGTGTCGCGATTGGAGGGCAAAGCCCTCCCTg                                                                                                                                <  6:213930/149‑1 (MQ=25)                   ggATCTTGAATTTGATCTGAGATTGCCGGGGGCGCGTTGCGCCCCTTGCGCGACAAAAGGCCGCTCCCACCGGGCCACGCTGCCAAATGGTAATGCAGCCCCTGGGGGAGCGGCTTTGTGTCGCGATTGGAGGGCAAAGCCCTCCCTGa                                                                                                                               <  6:224676/149‑1 (MQ=255)                    gATCGAGACTTTGATCTGAGATTGCCGGGGGCGCGTTGCGCCCCTTTCGCGACACAAGGTCGCTCCCACAGGGCCACGCTGGCACAAGGCAATGCAGGCCCTGTGGGAGCGGCCTTGTGTCGCGATTGGAGGGCTTTGccctccaatcg                                                                                                                              <  1:314199/149‑6 (MQ=255)                         ccgatctGATCTGAGATTGCCGGGGGCGCGTTGCGCCCCTTTCGCGACACAAGCCCGCTCCCACCGGGCCACGCTGGCACAAGGGAATGCAGTCCCTGTGGGAGCGGCCTTGTGTCGCGATTGGAGGGCAAAGCCCTCCCTGAATACCg                                                                                                                         <  3:22392/143‑1 (MQ=255)                           aCTTTGATCTGAGATTGCCGGGGGCGCGTTGCGCCCCTTTCGCGACACAAGGCCGCTCCCAAAGGGCCACGCTGGCACAAGGGAATGCAGTCCCAGTGGGAGCGGCCGTGTGTCGCGATTGGAGGGc                                                                                                                                             >  3:318593/1‑127 (MQ=255)                                 aTCTGAGATTGCCGGGGGCGCGTTGCGCCCCTTTCGCGACACAAGGCCGCTCCCACAGGGCCCCGCTGGCCCAAGGGAATGCAGTGCCGGTGGGAGCGGCCTTGTGTGGCGCTTTGAGGGCAAACCCCTCCCAGAAAAACGcagatag                                                                                                                  >  4:22392/1‑142 (MQ=37)                                 aTCTGAGATTGCCGGGGGCGCGTTGCGCCCCTTTCGCGACACAAGGCCGCTCCCACAGGGCCACGCTGGCACAAGGGAATGCAGTCCCTGTGGGAGCGGCCTTGTGTCGCGATTGGAGGGCAAAGCCCTCCCTGAATACCGCTCTAcc                                                                                                                  <  8:115223/148‑1 (MQ=255)                                    tGAGATTGCCGGGGGCGCGTTGCGCCCCTTTCGCGACACAAGGCCGCTCCCACAGGGCCACGCTGGCACAAGGGAATGCAGTCCCTGTGGGAGCGGCCTTGTGTAGCGATTTGAGGGCAAAGCCCTCCCTGAATACCGCTCTACCCGAc                                                                                                              >  2:305538/1‑149 (MQ=255)                                           gCCGGGGGCGCGTTGCGCCCCTTTCGCGACACAAGGCCGCTCCCACAGGGCCACGCTGGCACAAGGGAATGCAGTCCCTGTGGGAGCGGCCTTGTGTCGCGATTGGAGGGCAAAGCCCTCCCTGAATACCGCTCTACCCGACCGCGGa                                                                                                        >  7:195668/1‑148 (MQ=255)                                                   cgcgTTGCGCCCCTTTCGCGACACAAGGCCGCTCCCACAGGGCCACGCTGGCACAAGGGAATGCAGTCCCTGTGGGAGCGGCCTTGTGTCGCGATTGGAGGGCAAAGCCCTCCCTGAATACCGCTCTACCCGACCGCGGAAAACCGAgg                                                                                               <  5:393385/149‑1 (MQ=255)                                                    gcgTTGCGCCCCTTTCGCGACACAAGGCCGCTACCACAGGGCCACGCTGGCCCAAGGGAATGCAGTCCCTGTGGGAGCCGCCTTGTGTCGCGATTGGAGGGCAAACCCCTCCCTGAATACCGCTCTACCCCACCGCGGAAAACCCAGGc                                                                                              >  8:262051/1‑149 (MQ=255)                                                                     CGACACAAGGCCGCTCCCACAGGGCCACGCTGGCACAAGGGAATGCAGTCCCTGTGGGAGCGGCCTTGTGTCGCGATTGGAGGGCAAAGCCCTCCCTGAATACCGCTCTACCCGACCGCGGAAAACCGAGGCCCAAAGAGGCCCACCGc                                                                             <  2:130349‑M1/149‑1 (MQ=255)                                                                       acacatgggcgcccccaccgggactgcattccgttgtgcccgcgtggccgtgtgggagcggccttgtggcgcgaTTGGAGGGCAAAGCCCTCCCTGAATACCGCTCTACCCGACCGCGGAAAacct                                                                                                  <  4:336353‑M2/52‑2 (MQ=255)                                                                       acacaaggccgctcccacagggactgcattcccttgtgccagcgtggccctgtgggagcggccttgtgtcgcgaTTGGAGGGCAAAGCCCTGCCTGAATACCGCTCTACCCGACCGCGGAAAACCg                                                                                                  >  3:336353‑M2/75‑126 (MQ=255)                                                                          CAAGGCCGCTCCCACAGGGCCACGCTGGCACAAGGGAATGCAGTCCCTGTGGGAGCGGCCTTGTGTCGCGATTGGAGGGCAAAGCCCTCCCTGAATACCGCTCTACCCGACCGCGGAAAACCGAGGCCCAAAGAGGCCCACCGCTcccc                                                                        >  4:31953‑M1/1‑149 (MQ=255)                                                                           AAGGCCGCTCCCACAGGGCCACGCTGGCACAAGGGAATGCAGTCCCTGTGGGAGCGGCCTTGTGTCGCGATTGGAGGGCAAAGCCCTCCCTg                                                                                                                                >  4:189982‑M1/1‑92 (MQ=255)                                                                           AAGGCCGCTCCCACAGGGCCACGCTGGCACAAGGGAATGCAGTCCCTGTGGGAGCGGCCTTGTGTCGCGATTGGAGGGCAAAGCCCTCCCTGAATACCGCTCTACCCGACCGCGGAAAACCGCGGCCCAAAGAGGCCCCCCGCGccccc                                                                       <  8:334010‑M1/149‑1 (MQ=255)                                                                           AAGGCCGCTCCCACAGGGCCACGCTGGCACAAGGGAATGCAGTCCCTGTGGGAGCGGCCTTGTGTCGCGATTGGAGGGCAAAGCCCTCCCTGAATACCGCTCTACCCGACCGCGGAAAACCGAGGCCCAAAGAGGCCCACCg                                                                              >  6:123061‑M1/1‑142 (MQ=255)                                                                           AAGGCCGCTCCCACAGGGCCACGCTGGCACAAGGGAATGCAGTCCCTGTGGGAGCGGCCTTGTGTCGCGATTGGAGGGCAAAGCCCTCCCTGAATACCGCTCTACCCGACCGCGGAAAACCGAGGCCCAAAGAGGCCCACCg                                                                              <  5:123061‑M1/142‑1 (MQ=255)                                                                           AAGGCCGCTCCCACAGGGCCACGCTGGCACAAGGGAATGCAGTCCCTGTGGGAGCGGCCTTGTGTCGCGATTGGAGGGCAAAGCCCTCCCTGAATACCGCTCTACCCGACCGCGGAAAACCGAGGCCCAAAGAGGCCCACCGCTccccc                                                                       >  1:130349‑M1/1‑149 (MQ=255)                                                                             GGCCGCTCCCACAGGGCCACGCTGGCACAAGGGAATGCAGTCCCTGTGGGAGCGGCCTTGTGTCGCGATTGGCGGGCAAAGCCCTCCCTGAATACCGCTCTACCCGACCGCGGAAACCCGAGGCCCAAAGAGGCCCACCGctcccccct                                                                     <  7:142020‑M1/149‑3 (MQ=255)                                                                               CCGCTCCCACAGGGCCACGCTGGCACAAGGGAATGCAGTCCCTGTGGGAGCGGCCTTGTGTCGCGATTGGAGGGCAAAGCCCTCCCTGAATACCGCTCTACCTGACCGCGGAAAACCGAGGCCCAAAGAGGCCCACCGCTCCCCCATc                                                                    <  7:333556‑M1/148‑1 (MQ=255)                                                                                 GCTCCCACAGGGCCACGCTGGCACAAGGGAATGCAGTCCCTGTGGGAGCGGCCTTGTGTCGCGATTGGAGGGCAAAGCCCTCCCTGAATACCGCTCTACCCGACCGCGGAAAACCGAGGCCCAAAGAGGCCCACCGCTCCCCCATCAA‑c                                                                <  3:244830‑M1/149‑1 (MQ=255)                                                                                     ccacagggactgcattcccttgtgccagcgtggccctgtgggagcggccttgtgtcgcgaTTGGAGGGCAAAGCCCTCCCTGAATACCGCTCTACCCGACCGCGGAAAACCGAGGCCCAAAGAGGCCCACCGCTCCCCCATCAA‑CCTc                                                             >  3:1281‑M2/61‑148 (MQ=255)                                                                                     CCACAGGGCCACGCTGGCACAAGGGAATGCAGTCCCTGTGGGAGCGGCCTTGTGTCGCGATTGGAGGGCAAAGCCCTCCCTGAATAACGCTCTACCCGACCGCGGAAAACCGAGGCCCAAAGAGGCCCACCGCTCCCCCATCAA‑CCTc                                                             <  2:316833‑M1/148‑1 (MQ=255)                                                                                      cacagggactgcattcccttgtgccagcgtggccctgtgggagcggccttgtgtcgcgaTTGGAGGGCAAAGCCCTCCCTGAATACCGCTCTACCCGACCGCGGAAAACCGAGGCCAAAAGAGGCCCACCGCTCCCCCATCAA‑CCTCCa                                                           >  6:270774‑M2/60‑149 (MQ=255)                                                                                       acaGGGCCACGCTGGCACAAGGGAATGAAGTCCCTGTGGGAGCGGCCTTGTCTCGCGATTGGAGGGCAAAGCCCTCCATGAATCCAGCGCTAACGGACCGCGGAAAACCGAGGACCAAAGAGGCCCACGGCACCACACTCAC‑CCTCAac                                                          >  8:85648/1‑149 (MQ=255)                                                                                            GCCACGCTGGCACAAGGGAATGCAGTCCCTGTGGGAGCGGCCTTGTGTCGCGATTGGAGGGCAAAGCCCTCCCTGAATACCGCTCTACCCGACCGCGGAAAACCGAGGCCCAAAGAGGCCCACCGCTCCCCCATCAA‑CCTCCactgact                                                     >  4:244830‑M1/1‑149 (MQ=255)                                                                                                     cccttgtgccagcgtggccctgtgggagcggccttgtgtcgcgaTTGGAGGGCAAAGCCCTCCCTGAATACCGCTCTACCCGACCGCGGAAAACCGAGGCCCAAAGAGGCCCACCGCTCCCCCATCAA‑CCTCCACTGACTGCCCCATg                                             <  5:270774‑M2/104‑1 (MQ=255)                                                                                                       acaAGGGAATGCAGTCCCTGTGGGAGCGGCCTTGTGTCGCGATTGGAGGGCAAAGCCCTCCCTGAATACCGCTCAACCCGACCGCGGAAAACCGAGGCCCAAAGAGGCCCACCGCGCCCCCCTCCC‑CCTCCACTGACTGCCCCATg                                             >  8:245833/1‑146 (MQ=39)                                                                                                        caAGGGAATGCAGTCCCTGTGGGAGCGGCCTTGTGTCGCGATTGGAGGGCAAAGCCCTCCCTGAATACCGCTCTACCCGACCGCGGAAAACCGAGGCCCAAAGAGGCCCACCGCTCCCCCATCAA‑CCTCCACTGACTGCCCCATGTaca                                         >  2:270241/1‑149 (MQ=255)                                                                                                         aaGGGAATGCAGTCCCTGTGGGAGCGGCCTTGTGTCGCGATTGGAGGGCAAAGCCCTCCCTGAATACCGCTCTACCCGACCGCGGAAAACCGAGGCCCAAAGAGGCCCACCGCTCCCCCATCAA‑CCTCCACTGACTGCCCCATGTacac                                        >  6:155652/1‑149 (MQ=255)                                                                                                              aaTGCAGTCCCTGTGGGAGCGGCCTTGTGTCGCGATTGGAGGGCAAAGCCCTCCCTGAATACCGCTCTACCCGACCGCGGAAAACCGAGGCCCAAAGAGGCCCACCGCTCCCCCATCAA‑CCTCCACTGACTGCCCCATGTACACCaaa                                    >  5:215819/1‑148 (MQ=255)                                                                                                                    gTCCCTGTGGGAGCGGCCTTGTGTCGCGATTGGAGGGCAAAGCCCTCCCTGAATACCGCTCTACCCGACCGCGGAAAACCGAGGCCCAAAGAGGCCCACCGCTCCCCCATCAA‑CCTCCACTGACTGCCCCATGTAAACCAAAAATTTCg                             >  3:324213/1‑149 (MQ=255)                                                                                                                     tCCCTGTGGGAGCGGCCTTGTGTCGCGATTGGAGGGCAAAGCCCTCCCTGAATACCGCTCTACCCGACCGCGGAAAACCGAGGCCCAAAGAGGCCCACCGCTCCCCCATCAA‑CCTCCACTGACTGCCCCATGTACACCAAAAATTTCGt                            <  8:195668/149‑1 (MQ=255)                                                                                                                      ccctgtgggagcggccttgtgtcgcgaTTGGAGGGCAAAGCCCTCCCTGAATACCGCTCTACCCGCCCGCGGAAAACCGAGGCCCAAAGAGGCCCCCCGCGCCCCCATCCA‑CCTCCCCTGCCTGCCCCATGTACACGCAAAATTTCGTc                           >  8:157718‑M2/28‑149 (MQ=255)                                                                                                                        ctgtgggagcggccttgtgtcgcgaTTGGAGGGCAAAGCCCTCCCTGAATACCGCTCTACCCGACCGCGGAAAACCGAGGCCCAAAGAGGCCCACCGCTCCCCCATCAA‑CCTCCACTGACTGCCCCATGTACACCAAAAATTTCGTCaa                         >  3:10051‑M2/26‑149 (MQ=255)                                                                                                                                           tcgcgaTTGGAGGGCAAAGCCCTCCCTGAATACCGCTCTACCCGACCGCGGAAAACCGAGGCCCAAAGAGGCCCACCGCTCCCCCATCAA‑CCTCCACTGACTGCCCCATGTACACCAAAAATTTCGTCAACCCGTGCCCCGACTGGGc       <  7:262051‑M2/142‑1 (MQ=255)                                                                                                                                           tcgcgaTTGGAGGGCAAAGACCTCCCTGAATACCGCTCTACCAGACCCCGGAAAACCGAGGCCCAAAGAGGCCCACCGCTCCCCCATCAA‑CCTCCACTGACTGCCCCATGTACACCAAAAATTTCGTCAACCCGTGCCCCGACTGTGc       >  1:28891‑M2/7‑148 (MQ=255)                                                                                                                                             gggaTTGGATGGCAAAGCCCTCCCTTAATACCGCTCTACCCGACCGCGGAAAACCGACGCCCAAAGCCGCCCACCGCTCCCCCATCAACCCTCCACTGACTGCCCCATGTACACCAAAAATTTCGTCAACCCGTGCCCCGACTGGGCCa     <  1:305538‑M2/145‑1 (MQ=255)                                                                                                                                               gaTTGGAGGGCAAAGCCCTCCCTGAATACCGCTCTACCCGACCGCGGAAAACCGAGGCCCAAAGAGGCCCACCGCTCCCCCATCAA‑CCTCCACTGACAGCCCCATGTACACCAAAAATTTCGTCAACCCGTGCCCCGACTGGGCCACgg  >  1:311132‑M2/3‑149 (MQ=255)                                                                                                                                                 |                                                                                                                                                    GTACGACTAACACGCTGCGGATCGAGACTTTGATCTGAGATTGCCGGGGGCGCGTTGCGCCCCTTTCGCGACACAAGGCCGCTCCCACAGGGCCACGCTGGCACAAGGGAATGCAGTCCCTGTGGGAGCGGCCTTGTGTCGCGATTGGAGGGCAAAGCCCTCCCTGAATACCGCTCTACCCGACCGCGGAAAACCGAGGCCCAAAGAGGCCCACCGCTCCCCCATCAA‑CCTCCACTGACTGCCCCATGTACACCAAAAATTTCGTCAACCCGTGCCCCGACTGGGCCACGG  >  NC_002947/4893488‑4893778

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.