New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4955433	65 (1.050)	4 (0.070)	4/248	NT	5.9%	coding (1322/1374 nt)	fliI	flagellum‑specific ATP synthase
	?	NC_002947	= 4955456	66 (1.140)					coding (1299/1374 nt)	fliI	flagellum‑specific ATP synthase

TGGAAATGGCCAAGGCGCTGAGCCGCCTTGCGCTCGGCCTCTTCGGCCATGTCCACCACCGGCGCCAGGCGCGCGGCACGTCCGGGCAGCGCCATGGCTTATCAACCTGCCGGGGGCGTGAAAATCGCCCCCAGCTGTTCGCGGCTCTGCGCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4955280‑4955433 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tctgcgccaGGGCCTGCGCGAGAACGTGGGCATGGCGCAGAGCCGCGAACAGCTGGGGGCGATTTTCACGCCCCCGGCAGGTTGATAAGCCATGGCGCTGCCCGGACGTGCCGCGCGCCTGGCGCCGGTGGTGGACATGGCCGAAGAGGCCGAGCG  <  NC_002947/4955456‑4955310                                                                                                                                                                                                                                                                                                               TGGAAATGGCCAAGGCGCTGAGCCGCCTTGCGCTCGGCCTCTTCGGCCATGTCCACCACCGGCGCCAGGCGCGCGGCACGTCCGGGCAGCGCCATGGCTTATCAACCTGCCGGGGGCGTGAAAATCGCCCCCAGCTGTTCGCGGCTCTG                                                                                                                                                          >  2:11755/1‑149   GAAATGGCCAAGGCGCTGAGCCGCCTTGCGCTCGGCCTCTTCGGCCATGTCCACCACCGGCGCCAGGCGCGCGGCACGTCCGGGCAGCGCCATGGCTTATCAACCTGCCGGGGGCGTGAAAATCGCCCCCAGCTGTTCGCGGCTCTGC                                                                                                                                                         <  6:164214/148‑1    AAATGGCCAAGGCGCTGAGCCGCCTTGCGCTCGGCCTCTTCGGCCATGTCCACCACCGGCGCCAGGCGCGCGGCACGTCCGGGCAGCGCCATGGCTTATCAACCTGCCGGGGGCGTGAAAATCGCCCCCAGCTGTTCGCGGCTCTGCGC                                                                                                                                                       <  5:131250/149‑1     AATGGCCAAGGCGCTGAGCCGCCTTGCGCTCGGCCTCTTCGGCCATGTCCAACACCGGCGCCAGGCGCGCGGCACGTCCGGGCAGCGCCATGGCTTATCAACCTGCCGGGGGCGTGAAAATCGCCCCCAGCTGTTCGCGGCTCTGCGC                                                                                                                                                       >  1:95404/1‑148      ATGGCCAAGGCGCTGAGCCGCCTTGCGCTCGGCCTCTTCGGCCATGTCCACCACCGGCGCCAGGCGCGCGGCACGTCCGGGCAGCGCCATGGCTTATCAACCTGCCGGGGGCGTGAAAATCGCCCCCAGCTGTTCGCGGCTCTGCGCCA                                                                                                                                                     >  4:116852/1‑149          CCAAGGCGCTGAGCCGCCTTGCGCTCGGCCTCTTCGGCCATGTCCACCACCGGCGCCAGGCGCGCGGCACGTCCGGGCAGCGCCATGGCTTATCAACCTGCC‑GGGGCGTGAAAATCGCCCCCAGCTGTTCGCGGCTCTGCGCCAGGGCC                                                                                                                                                >  4:304933/1‑149                           CTTGCGCTCGGCCTCTTCGGCCATGTCCACCACCGGCGCCAGGCGCGCGGCACGTCCGGGCAGCGCCATGGCTTATCAACCTGCCGGGGGCGTGAAAATCGCCCCCAGCTGTTCGCGGCTC                                                                                                                                                            <  7:275054/121‑1                           CTTGCGCTCGGCCTCTTCGGCCATGTCCACCACCGGCGCCAGGCGCGCGGCACGTCCGGGCAGCGCCATGGCTTATCAACCTGCCGGGGGCGTGAAAATCGCCCCCAGCTGTTCGCGGCTC                                                                                                                                                            >  8:275054/1‑121                                GCTCGGCCTCTTCGGCCATGTCCACCACCGGCGCCAGGCGCGCGGCACGTCCGGGCAGCTCCATGGCTTATCAACCTGCCGGGGGCGTGAAAATCGCCCCCAGCTGTTCGCGGCTCTGCGCCAGGGCCTGCGCGAGAACGTGGGCAGGG                                                                                                                           >  8:22212/1‑149                                    GGCCTCTTCGGCCATGTCCACCACCGGCGCCAGGCGCGCGGCACGTCCGGGCAGCGCCATGGCTTATCAACCTGCC‑GGGGCGTGAAAATCGCCCCCAGCTGTTCGCGGCTCTGCGCCAGGGCCTGCGCGAGAACGTGGGCATGGCGCAG                                                                                                                      <  3:304933/149‑1                                      CCTCTTCGGCCATGTCCACCACCGGCGCCAGGCGCGCGGCACGTCCGGGCAGCGCCATGGCTTATCAACCTGCCGGGGGCGTGAAAATCGCCCCCAGCTGTTCGCGGCTCTGCGCCAGGGCCTGCGCGAGAACGTGGGCATGGCGCAGA                                                                                                                     <  7:22212/149‑1                                       CTCTTCGGCCATGTCCACCACCGGCGCCAGGCGCGCGGCACGTCCGGGCAGCGCCATGGCTTATCAACCTGCCGGGGGCGTGAAAATCGCCCCCAGCTGTTCGCGGCTCTGCGCCAGGGCCTGCGCGAGAACGTGGGCATGGCGCAGAG                                                                                                                    <  7:294735/149‑1                                                                                                                                                      CGCCAGGGCCTGCGCGAGAACGTGGGCATGGCGCAGAGCCGCGAACAGCTGGGGGCGATTTTCACGCCCCCGGCAGGTTGATAAGCCATGGCGCTGCCCGGACGTGCCGCGCGCCTGGCGCCGGTGGTGGACATGGCCGAAGAGGCC       >  5:310334/1‑147                                                                                                                                                       GCCAGGGCCTGCGCGAGAACGTGGGCATGGCGCAGAGCCGCGAACAGCTGGGGGCGATTTTCACGCCCCCGGCAGGTTGATAAGCCATGGCGCTGCCCGGACGTGCCGCGCGCCTGGCGCCGGTGGTGGACATGGCCGAAGAGGCCGAG    <  3:333347/149‑1                                                                                                                                                         CAGGGCCTGCGCGAGAACGTGGGCATGGCGCAGAGCCGCGAACAGCTGGGGGCGATTTTCACGCCCCCGGCAGGTTGATAAGCCATGGCGCTGCCCGGACGTGCCGCGCGCCTGGCGCCGGTGGTGGACATGGCCGAAGAGGCCGAGCG  >  6:77866/1‑149                                                                                                                                                                                                                                                                                                               TGGAAATGGCCAAGGCGCTGAGCCGCCTTGCGCTCGGCCTCTTCGGCCATGTCCACCACCGGCGCCAGGCGCGCGGCACGTCCGGGCAGCGCCATGGCTTATCAACCTGCCGGGGGCGTGAAAATCGCCCCCAGCTGTTCGCGGCTCTGCGCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4955280‑4955433 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tctgcgccaGGGCCTGCGCGAGAACGTGGGCATGGCGCAGAGCCGCGAACAGCTGGGGGCGATTTTCACGCCCCCGGCAGGTTGATAAGCCATGGCGCTGCCCGGACGTGCCGCGCGCCTGGCGCCGGTGGTGGACATGGCCGAAGAGGCCGAGCG  <  NC_002947/4955456‑4955310

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.