New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4955433	65 (1.050)	4 (0.070)	4/248	NT	5.9%	coding (1322/1374 nt)	fliI	flagellum‑specific ATP synthase
	?	NC_002947	= 4955456	66 (1.140)					coding (1299/1374 nt)	fliI	flagellum‑specific ATP synthase

CGCTCGGCCTCTTCGGCCATGTCCACCACCGGCGCCAGGCGCGCGGCACGTCCGGGCAGCGCCATGGCTTATC‑AACCTGCCGGGGGCGTG‑AAAATCGCCCCCAGCTGTTCGCGGCTCTGCGCCATGCCCACGTTCTCGCGCAGGCCCTGGCGCAGAAACTCAACCAGCTTCGATTGCAAGGCAATGGCCAGGTCAGTCTCCGGATCACCGCCAGCTACATAGGCACCCACGCTGATCAGGTCGCGGCTTTGCGACAGGCGCGACCACAGTTGCTTGAACTTCTGCGCCTGGCG  >  NC_002947/4955310‑4955602                                                                                                                                                     |                                                                                                                                                   cgcTCGGCCTCTTCGGCCATGTCCACCACCGGCGCCAGGCGCGCGGCACGTCCGGGCAGCGCCATGGCTTATC‑AACCTGCCGGGGGCGTG‑AAAATCGCCCCCAGCTGTTCGCGGCTCTGCGCCATGCCCACGTTCTCGCGCAGGCCCtg                                                                                                                                                  >  6:77866‑M2/1‑147 (MQ=255)   cTCGGCCTCTTCGGCCATGTCCACCACCGGCGCCAGGCGCGCGGCACGTCCGGGCAGCGCCATGGCTTATC‑AACCTGCCGGGGGCGTG‑AAAATCGCCCCCAGCTGTTCGCGGCTCTGCGCCATGCCCACGTTCTCGCGCAGGCCCtggc                                                                                                                                                <  3:333347‑M2/149‑5 (MQ=255)      ggCCTCTTCGGCCATGTCCACCACCGGCGCCAGGCGCGCGGCACGTCCGGGCAGCGCCATGGCTTATC‑AACCTGCCGGGGGCGTG‑AAAATCGCCCCCAGCTGTTCGCGGCTCTGCGCCATGCCCACGTTCTCGCGCAGGCCCtggcg                                                                                                                                               >  5:310334‑M2/1‑142 (MQ=255)            ttCGGCCATGTCCACCACCGGCGCCAGGCGCGCGGCACGTCCGGGCAGCGCCATGGCTTATC‑AACCTGCCGGGGGCGTG‑AAAATCGCCCCCAGCTGTTCGCGGCTCTGCGCCATGCCCACGTACTCGCGCAGGCCCTGCCCCAGaaaat                                                                                                                                       >  8:148154/1‑147 (MQ=255)             tCGGCCATGTCCACCACCGGCGCCAGGCGCGCGGCACGTCCGGGCAGCGCCATGGCTTATC‑AACCTGCCGGGGGCGTG‑AAAATCGCCCCCAGCTGTTCGCGGCTCTGCGCCATGCCCACGTTCTCGCGCAGGCCCTGGCGCAGAAACt                                                                                                                                       >  6:110395/1‑148 (MQ=255)              cGGCCATGTCCACCACCGGCGCCAGGCGCGCGGCACGTCCGGGCAGCGCCATGGCTTATC‑AACCTGCCGGGGGCGTGAAAAATCGCCCCCAGCTGTTCGCGGCTCTGCGCCATGCCCACGTTCTCGCGCAGGCCCTGGCGCAGaaa                                                                                                                                         <  4:106747/146‑1 (MQ=255)               ggCCATGTCCACCACCGGCGCCAGGCGCGCGGCACGTCCGGGCAGCGCCATGGCTTATC‑AACCTGCCGGGGGCGTG‑AAAATCGCCCCCAGCTGTTCGCGGCTCTGCGCCATGCCCACGTTCTCGCGCAGGCCCTGGCGCAGAAACTCaa                                                                                                                                    <  1:57589/149‑1 (MQ=255)               ggCCATGTCCACCACCGGCGCCAGGCGCGCGGCACGTCCGGGCAGCGCCATGGCTTATC‑AACCTGCCGGGGGCGTG‑AAAATCGCCCCCAGCTGTTCGCGGCTCTGCGCCATGCCCACGTTCTCGCGCAGGCCCTGGCGCAGAAACTCaa                                                                                                                                    >  1:170898/1‑149 (MQ=255)               ggCCATGTCCACCACCGGCGCCAGGCGCGCGGCACGTCCGGGCAGCGCCATGGCTTATC‑AACCTGCCGGGGGCGTG‑AAAATCGCCCCCAGCTGTTCGCGGCTCTGCGCCATGCCCACGTTCTCGCGCAGGCCCTGGCGCAGAAACTCa                                                                                                                                     <  3:157715/148‑1 (MQ=255)                gCCATGTCCACCACCGGCGCCAGGCGCGCGGCACGTCCGGGCAGCGCCATGGCTTATC‑AACCTGCCGGGGGCGTG‑AAAATCGCCCCCAGCTGTTCGCGGCTCTGCGCCATGCCCACGTTCTCGCGCAGGCCCTGGCGCAGAAACTCAAc                                                                                                                                   <  8:120142/149‑1 (MQ=255)                 ccATGTCCACCACCGGCGCCAGGCGCGCGGCACGTCCGGGCAGCGCCATGGCTTATC‑AACCTGCCGGGGGCGTG‑AAAATCGCCCCCAGCTGTTCGCGGCTCTGCGCCATGCCCACGTTCTCGCGCAGGCCCTGGCGCAGAAACTCAAcc                                                                                                                                  >  7:342014/1‑149 (MQ=255)                      tCCACCACCGGCGCCAGGCGCGCGGCACGTCCGGGCAGCGCCATGGCTTATC‑AACCTGCCGGGGGCATG‑AAAATCGCCCCCAGCTGTTCGCGGCTCTGCGCCATGCCCACGTTCTCGCGCAGGCCCTGGCGCAGAAACTCAACCAGCtt                                                                                                                             <  2:207/149‑1 (MQ=255)                         accaccGGCGCCAGGCGCGCGGCACGTCCGGGCAGCGCCATGGCTTATC‑AACCTGCCGGGGGCGTG‑AAAATCGCCCCCAGCTGTTCGCGGCTCTGCGCCATGCCCACGTTCTCGCGCCGGCCCTGGCGCAGAAACTACACCAGCTTCGa                                                                                                                          >  6:232532/1‑149 (MQ=255)                         accaccGGCGCCAGGCGCGCGGCACGTCCGGGCAGCGCCATGGCTTATC‑AACCTGCCGGGGGCGTG‑AAAATCGCCCCCAGCTGTTCGCGGCTCTGCGCCATGCCCACGTTCTCGCGCAGGCCCTGGCGCAGAAACTCAACCAGCTTCGa                                                                                                                          >  6:56252/1‑149 (MQ=255)                           caccGGCGCCAGGCGCGCGGCACGTCCGGGCAGCGCCATGGCTTATCTAACCTGCCGGGGGCGTG‑AAAATCGCCCCCAGCTGTTCGCGGCTCTGCGCCATGCCCACGTTCTCGCGCAGGCCCTGGCGCAGAAACTCAACCAGCTTCGAt                                                                                                                         >  1:280500/1‑149 (MQ=255)                           caccGGCGCCAGGCGCGCGGCACGTCCGGGCAGCGCCATGGCTTATC‑AACCTGCCGGGGGCGTG‑AAAATCGCCCCCAGCTGTTCGCGGCTCTGCGCCATGCCCACGTTCTCGCGCAGGCCCTGGCGCAGAAACTCAACCAGCTTCGAtt                                                                                                                        >  1:209670/1‑149 (MQ=255)                            accGGCGCCAGGCGCGCGGCACGTCCGGGCAGCGCCATGGCTTATC‑AACCTGCCGGGGGCGTG‑AAAATCGCCCCCAGCTGTTCGCGGCTCTGCGCCATGCCCACGTTCTCGCGCAGGCCCTGGCGCAGAAACTCAACCAGCtt                                                                                                                             >  1:382895/1‑143 (MQ=255)                            accGGCGCCAGGCGCGCGGCACGTCCGGGCAGCGCCATGGCTTATC‑AACCTGCCGGGGGCGTG‑AAAATCGCCCCCAGCTGTTCGCGGCTCTGCGCCATGCCCACGTTCTCGCGCAGGCCCTGGCGCAGAAACTCAACCAGCtt                                                                                                                             <  2:382895/143‑1 (MQ=255)                               ggCGCCAGGCGCGCGGCACGTCCGGGCAGCGCCATGGCTTATC‑AACCTGCCGGGGGCGTG‑AAAATCGCCCCCAGCTGTTCGCGGCTCTGCGCCATGCCCACGTTCTCGCGCAGGCCCTGGCGCAGAAACTCAACCAGCTTCGATTGCaa                                                                                                                    <  1:146588/149‑1 (MQ=255)                                gcgcCAGGCTCGCGGCACGTCCGGTCATCGCCATGGCTTATC‑AACCTGCCGGGGGCGTG‑AAAATCGCCCCCAGCTGGTCGCGGCTCTGCGCCATGCCCACGTTCTCGCGCAGGCCCTGGCGCAGAAACTCAACCAGCTTCGATTGCAAg                                                                                                                   <  2:141913/149‑1 (MQ=255)                                gcgcCAGGCGCGCGGCACGTCCGGGCAGCGCCATGGCTTATC‑AACCTGCCGGGGGCGTG‑AAAATCGCCCCCAGCTGTTCGCGGCTCTGCGCCATGCCCACGTTCTCGCGCAGGCCCTGGCGCAGAAACTCAACCAGCTTCGATTGCAAg                                                                                                                   <  8:313175/149‑1 (MQ=255)                                 cgcCAGGCGCGCGGCACGTCCGGGCAGCGCCATGGCTTATC‑AACCTGCCGGGGGCGTG‑AAAATCGCCCCCAGCTGTTCGCGGCTCTGCGCCATGCCCACGTTCTCGCGCAGGCCCTGGCGCAGAAACTCAACCAGCTTCGATTGCAAgg                                                                                                                  <  8:226125/149‑1 (MQ=255)                                     aGGCGCGCGGCACGTCCGGGCAGCGCCATGGCTTATC‑AACCTGCCGGGGGCGTG‑AAAATCGCCCCCAGCTGTTCGCGGCTCTGCGCCATGCCCACGTTCTCGCGCAGGCCCTGGCGCAGAAACTCAAc                                                                                                                                   >  6:335717/1‑128 (MQ=255)                                     aGGCGCGCGGCACGTCCGGGCAGCGCCATGGCTTATC‑AACCTGCCGGGGGCGTG‑AAAATCGCCCCCAGCTGTTCGCGGCTCTGCGCCATGCCCACGTTCTCGCGCAGGCCCTGGCGCAGAAACTCAAc                                                                                                                                   <  5:335717/128‑1 (MQ=255)                                     aGGCGCGCGGCACGTCCGGGCAGCGCCATGGCTTATC‑AACCTGCCGGGGGCGTG‑AAAATCGCCCCCAGCTGTTCGCGGCTCTGCGCCATGCCCACGTTCTCGCGCAGGCCCTGGCGCAGAAACTCAACCAGCTTCGATTGCAAGGCAAt                                                                                                              <  7:124547/149‑1 (MQ=255)                                       gcgcgcGGCACGTCCGGGCAGCGCCATGGCTTATC‑ACCCTGCCGGGGGCGTG‑AAAATCGCCCCCAGCTGTTCGCGGCTCTGCGCCATGCCCACGTTCTCGCGCAGGCCCTGGCGCAGAAACTCAACCAGCTTCGATTGCAAGGCAATgg                                                                                                            <  4:227965/149‑1 (MQ=255)                                        cgcgcgGCACGTCCGGGCAGCGCCATGGCTTATC‑AACCTGCCGGGGGCGTG‑AAAATCGCCCCCAGCTGTTCGCGGCTCTGCGCCATGCCCACGTTCTCGCGCAGGCCCTGGCGCAGAAACTCAACCAGCTTCGATTGCAAGGCAATGGc                                                                                                           <  4:333347/149‑1 (MQ=255)                                             ggCACGTCCGGGCAGCGACATGGCTTATC‑AACCTGCCGGGGGCGTG‑AAAATCGCCCCCAGCTGTTCGCGGCTCTGCGCCATGCCCACGTTCTCGCGCAGGCCCTGGCGCAGAAACTCAACCAGCTTCGATTGCAAGGCAATGGCCAGGt                                                                                                      <  5:232532/149‑1 (MQ=255)                                                   tCCGGGCAGCGCCATGGCTTATC‑AACCTGCCGGGGGCGTG‑AAAATCGCCCCCAGCTGTTCGCGGCTCTGCGCCATGCCCACGTTCTCGCGCAGGCCCTGGCGCAGAAACTCAACCAGCTTCGATTGCAAGGCAATGGCCAGGTCAGtct                                                                                                >  5:157234/1‑149 (MQ=255)                                                       ggCAGCGCCATGGCTTATC‑AACCTGCCGGGGGCGTG‑AAAATCGCCCCCAGCTGTTCGCGGCTCTGCGCCATGCCCACGTTCTCGCGCAGGCCCTGGCGCAGAAACTCAACCAGCTTCGATTGCAAGGCAATGGCCAGGTCAGTCTCCg                                                                                             >  8:99486/1‑148 (MQ=255)                                                            cgcCATGGCTTATC‑AACCTGCCGGGGGCGTG‑AAAATCGCCCCCAGCTGTTCGCGGCTCTGCGCCATGCCCACGTTCTCGCGCAGGCCCTGGCGCAGAAACTCAACCAGCTTCGATTGCAAGGCAATGGCCAGGTCAGTCTCCGGATCAc                                                                                       >  6:55994/1‑149 (MQ=255)                                                               cATGGCTTATC‑AACCTGCCGGGGGCGTG‑AAAATCGCCCCCAGCTGTTCGCGGCTCTGCGCCATGCCCACGTTCTCGCGCAGGCCCTGGCGCAGAAACTCAACCAGCTTCGATTGCAAGGCAATGGCCAGGTCAGTCTCCGGATCACCGc                                                                                    <  2:261036/149‑1 (MQ=255)                                                                aTGGCTTATC‑AACCTGCCGGGGGCGTG‑AAAATCGCCCCCAGCTGTTCGCGGCTCTGCGCCATGCCCACGTTCTCGCGCAGGCCCTGGCGCAGAAACTCAACCAGCTTCGATTGCAAGGCAATGGCCAGGTCAGTCTCCGGATCACCGcc                                                                                   <  5:110395/149‑1 (MQ=255)                                                                  ggCTTATC‑AACCTGCCGGGGGCGTG‑AAAATCGCCCCCAGCTGTTCGCGGCTCTGCGCCATGCCCACGTTCTCGCGCAGGCCCTGGCGCAGAAACTCAACCAGCTTCGATTGCAAGGCAATGGCCAGGTCAGTCTCCGGATCACCGCCAg                                                                                 >  6:339284/1‑149 (MQ=255)                                                                   gCTTATC‑AACCTGCCGGGGGCGTG‑AAAATCGCCCCCAGCTGTTCGCGGCTCTGCGCCATGCCCACGTTCTCGCGCAGGCCCTGGCGCAGAAACTCAACCAGCTTCGATTGCAAGGCAATGGCCAGGTCAGTCTCCGGATCACCGCCAg                                                                                 <  7:26507/148‑1 (MQ=255)                                                                        tC‑AACCTGCCGGGGGCGTG‑AAAATCGCCCCCAGCTGTTCGCGGCTCTGCGCCATGCCCACGTTCTCGCGCAGGCCCTGGCGCAGAAACTCAACCAGCTTCGATTGCAAGGCAATGGCCAGGTCAGTCTCCGGATCACCGCCAGCTACAt                                                                           <  7:30424/149‑1 (MQ=255)                                                                           aaCCTGCCGGGGGCGTG‑AAAATCGCCCCCAGCTGTTCGCGGCTCTGCGCCATGCCCACGTTCTCGCGCAGGCCCTGGCGCAGAAACTCAACCAGCTTCGATTGCAAGGCAATGGCCAGGTCAGTCTCCGGATCACCGCCAGCTACATAg                                                                         <  7:148154/149‑1 (MQ=255)                                                                           aaCCTGCCGGGGGCGTG‑AAAATCGCCCCCAGCTGTTCGCGGCTCTGCGCCATGCCCACGTTCTCGCGCAGGCCCTGGCGCAGAAACTCAACCAGCTTCGATTGCAAGGCAATGGCCAGGTCAGTCTCCGGATCACCGCCAGCTACATAg                                                                         >  8:287689/1‑149 (MQ=255)                                                                            aCCTGCCGGGGGCGTG‑AAAATCGCCCCCAGCTGTTCGCGGCTCTGCGCCATGCCCACGTTCTCGCGCAGGCCCTGGCGCAGAAACTCAACCAGCTTCGATTGCAAGGCAATGGCCAGGTCAGTCTCCGGATCACCGCCAGCTACATAgg                                                                        >  8:274677/1‑149 (MQ=255)                                                                              cTGCCGGGGGCGTG‑AAAATCGCCCCCAGCTGTTCGCGGCTCTGCGCCATGCCCACGTTCTCGCGCAGGCCCTGGCGCAGAAACTCAACCAGCTTCGATTGCAAGGCAATGGCCAGGTCAGTCTCCGGATCACCGCCAGCTACATAGGCa                                                                      <  5:56252/149‑1 (MQ=255)                                                                              cTGCCGGGGGCGTG‑AAAATCGCCCCCAGCTGTTCGCGGCTCTGCGCCATGCCCACGTTCTCGCGCAGGCCCTGGCGCAGAAACTCAACCAGCTTCGATTGCAAGGCAATGGCCAGGTCAGTCTCCGGATCACCGCCAGCTACATAGGCa                                                                      >  4:302312/1‑149 (MQ=255)                                                                              cTGCCGGGGGCGTG‑AAAATCGCCCCCAGCTGTTCGCGGCTCTGCGCCATGCCCACGTTCTCGCGCAGGCCCTGGCGCAGAAACTCAACCAGCTTCGATTGCAAGGCAATGGCCAGGTCAGTCTCCGGATCACCGCCAGCTACATAGGCa                                                                      >  1:99623/1‑149 (MQ=255)                                                                                    ggggCGTG‑AAAATCGCCCCCAGCTGTTCGCGGCTCTGCGCCATGCCCACGTTCTCGCGCAGGCCCTGGCGCAGAAACTCACCCAGCTTCGATTGCCAGGCACTGGCCAGGGCAGTCTCCGGCGCACCGCCACCTACATCGGCCCCcgcg                                                                >  4:232067/1‑149 (MQ=255)                                                                                         gTG‑AAAATCGCCCCCAGCTGTTCGCGGCTCTGCGCCATGCCCACGTTCTCGCGCAGGCCCTGGCGCAGAAACTCAACCAGCTTCGATTGCAAGGCAATGGCCAGGTCAGTCTCCGGATCACCGCCAGCTACATAGGCACCCACGCTGa                                                            >  2:312984/1‑148 (MQ=255)                                                                                         gTG‑AAAATCGCCCCCAGCTGTTCGCGGCTCTGCGCCATGCCCACGTTCTCGCGCAGGCCCTGGCGCAGAAACTCAACCAGCTTCGATTGCAAGGCAATGGCCAGGTCAGTCTCCGGATCACCGCCAGCTACATAGGCACCCACGCTGAt                                                           >  1:61413/1‑149 (MQ=255)                                                                                          tG‑AAAATCGCCCCCAGCTGGTCGCGGCTCTGCGCCATGCCCACGTTCTCGCGCAGGCCCTGGCGCAGAAACTCAACCAGCTTCGATTGCAAGGCAATGGCCAGGTCAGTCTCCGGATCACCGCCAGCTACATAGGCACCCACGCTGATc                                                          <  4:28112/149‑1 (MQ=255)                                                                                           g‑AAAATCGCCCCCAGCTGTTCGCGGCTCTGCGCCATGCCCACGTTCTCGCGCAGGCCCTGGCGCAGAAACTCAACCAGCTTCGATTGCAAGGCAATGGCCAGGTCAGTCTCCGGATCACCGCCAGCTACa                                                                            <  4:17920/130‑1 (MQ=255)                                                                                           g‑AAAATCGCCCCCAGCTGTTCGCGGCTCTGCGCCATGCCCACGTTCTCGCGCAGGCCCTGGCGCAGAAACTCAACCAGCTTCGATTGCAAGGCAATGGCCAGGTCAGTCTCCGGATCACCGCCAGCTACa                                                                            >  3:17920/1‑130 (MQ=255)                                                                                               aaccacccccAGCTGTTCGCGGCTCTGCGCCATGCCCACGTTCTCGCGCAGGCCCTGGCGCAGAAACTCAACCAGCTTCGATTGCAAGGCAATGGCCAGGTCAGTCTCCGGATCACCGCCAGCTACATAGGCACCCACGCTGATc                                                          <  1:134745/140‑1 (MQ=255)                                                                                                   gCCCCCAGCTGTTCGCGGCTCTGCGCCATGCCCACGTTCTCGCGCAGGCCCTGGCGCAGAAACTCAACCAGCTTCGATTGCAAGGCAATGGCCAGGTCAGTCTCCGGATCACCGCCAGCTACATAGGCACCCACGCTGATCAGGTcgc                                                   <  7:99486/148‑1 (MQ=255)                                                                                                     ccccAGCTGTTCGCGGCTCTGCGCCATGCCCACGTTCTCGCGCAGGCCCTGGCGCAGAAACTCAACCAGCTTCGATTGCAAGGCAATGGCCAGGTCAGTCTCCGGAt                                                                                          <  1:14228/107‑1 (MQ=255)                                                                                                     ccccAGCTGTTCGCGGCTCTGCGCCATGCCCACGTTCTCGCGCAGGCCCTGGCGCAGAAACTCAACCAGCTTCGATTGCAAGGCAATGGCCAGGTCAGTCTCCGGAt                                                                                          >  2:14228/1‑107 (MQ=255)                                                                                                       ccAGCTGTTCGCGGCTCTGCGCCATGCCCACGTTCTCGCGCAGGCCCTGGCGCAGAAACTCAACCAGCTTCGATTGCAAGGCAATGGCCAGGTCAGTCTCCGGATCACCGCCAGCTACATAGGCACCCACGCTGATCAGGTCGCGGCtt                                              >  1:318754/1‑149 (MQ=255)                                                                                                        cAGCTGTTCGCGGCTCTGCGCCATGCCCACGTTCTCGCGCAGGCCCTGGCGCAGAAACTCAACCAGCTTCGATTGCAAGGCAATGGCCAGGTCAGTCTCCGGATCACCGCCAGCTACATAGGCACCCACGCTGATCAGGTCGCGGCttt                                             <  3:116852/149‑1 (MQ=255)                                                                                                         aGCTGTTCGCGGCTCTGCGCCATGCCCACGTTCTCGCGCAGGCCCTGGCGCAGAAACTCAACCAGCTTCGATTGCAAGGCAATGGCCAGGTCAGTCTCCGGATCACCGCCAGCTACATAGGCACCCACGCTGATCAGGTCGCGGCTTTg                                            <  8:254796/149‑1 (MQ=255)                                                                                                              ttCGCGGCTCTGCGCCATGCCCACGTTCTCGCGCAGGCCCTGGCGCAGAAACTCAACCAGCTTCGATTGCAAGGCAATGGCCAGGTCAGTCTCCGGATCACCGCCAGCTACATAGGCACCCACGCTGATCAGGTCGCGGCTTTGCGa                                         <  2:280500/147‑1 (MQ=255)                                                                                                               tCGCGGCTCTGCGCCATGCCCACGTTCTCGCGCAGGCCCTGGCGCAGAAACTCAACCAGCTTCGATTGCAAGGCAATGGCCAGGTCAGTCTCCGGATCACCGCCAGCTACATAGGCACCCACGCTGATCAGGTCGCGGCTTTGCGACAg                                      >  7:84077/1‑149 (MQ=255)                                                                                                                cgcgGCTCTGCGCCATGCCCACGTTCTCGCGCAGGCCCTGGCGCAGAAACTCAACCAGCTTCGATTGCAAGGCAATGGCCAGGTCAGTCTCCGGATCACCGCCAGCTACATAGGCACCCACGCTGATCAGGTCGCGGCTTTGCGACAg                                      <  2:99623/148‑1 (MQ=255)                                                                                                                     ctctGCGCCATGCCCACGTTCTCGCGCAGGCCCtggcgcagagccgcgaacagctgggggcgattttcacgcccccggcaggttgataagccatggcgctgcccggacgtgccgcgcgcctggcgccggtggtggacatggccgaagag                                <  7:294735‑M2/149‑117 (MQ=255)                                                                                                                      tctGCGCCATGCCCACGTTCTCGCGCAGGCCCtggcgcagagccgcgaacagctgggggcgattttcacgcccccggcaggttgataagccatggcgctgcccggacgtgccgcgcgcctggcgccggtggtggacatggccgaagagg                               <  7:22212‑M2/149‑118 (MQ=255)                                                                                                                       ctGCGCCATGCCCACGTTCTCGCGCAGGCCCtggcgcagagccgcgaacagctgggggcgattttcacgccccggcaggttgataagccatggcgctgcccggacgtgccgcgcgcctggcgccggtggtggacatggccgaagaggcc                              <  3:304933‑M2/149‑119 (MQ=255)                                                                                                                          cgcCATGCCCACGTTCTCGCGCAGGCCCTGGCGCAGAAACTCAACCAGCTTCGATTGCAAGGCAATGGCCAGGTCAGTCTCCGGATCACCGCCAGCTACATAGGCACCCACGCTGATCAGGTCGCGGCTTTGCGACAGGCGCGAcc                              <  3:121898/146‑1 (MQ=255)                                                                                                                          cgcCATGCCCACGTTCTCGCGCAGGCCCTGGCGCAGAAACTCAACCAGCTTCGATTGCAAGGCAATGGCCAGGTCAGTCTCCGGATCACCGCCAGCTACATAGGCACCCACGCTGATCAGGTCGCGGCTTTGCGACAGGCGCGACca                             <  2:209670/147‑1 (MQ=255)                                                                                                                            cccTGCCCACGTTCTCGCGCAGGCCCtggcgcagagccgcgaacagctgggggcgattttcacgcccccggcaggttgataagccatggagctgcccggacgtgccgcgcgcctggcgccggtggtggacatggccgaagaggccgagc                         >  8:22212‑M2/1‑26 (MQ=255)                                                                                                                            ccATGCCCACGTTCTCGCGCAGGCCCTGGCGCAGAAACTCAACCAGCTTCGATTGCAAGGCAATGGCCAGGTCAGTCTCCGGATCACCGCCAGCTACATAGGCACCCACGCTGATCAGGTCGCGGCTTTGCGACAGGCGCGACCACAGt                         >  2:354367/1‑149 (MQ=255)                                                                                                                               tGCCCACGTTCTCGCGCAGGCCCTGGCGCAGAAACTCAACCAGCTTCGATTGCAAGGCAATGGCCAGGTCAGTCTCCGGATCACCGCCAGCTACATAGGCACCCACGCTGATCAGGTCGCGGCTTTGCGACAGGCGCGACCACAGTTGc                      <  1:312984/149‑1 (MQ=255)                                                                                                                               tGCCCACGTTCTCGCGCAGGCCCTGGCGCAGAAACTCAACCAGCATCGATTGCAAGGCAATGGCCAGGTCAGTCTCCGGATCACCGCCAGCTACATACGCACCCACGCTGATCAGCTCGCGGCTTTGCGACAGGCGCGACCACAGTTGc                      <  3:232067/149‑1 (MQ=255)                                                                                                                                 cccACGTTCTCGCGCAGGCCCTGGCGCAGAAACTCAACCAGCTTCGATTGCAAGGCAATGGCCAGGTCAGTCTCCGGATCACCGCCAGCTACATAGGCACCCACGCTGATCAGGTCGCGGCTTTGCGACAGGCGCGACCACAGTTGCtt                    <  1:268728/149‑1 (MQ=255)                                                                                                                                  ccACGTTCTCGCGCAGGCCCTGGCGCAGAAACTCAACCAGCTTCGATTGCAAGGCAATGGCCAGGTCAGTCTCCGGATCACCGCCAGCTACATAGGCACCCACGCTGATCAGGTCGCGGCTTTGCGACAGGCGCGACCACAGTTGCtt                    >  5:339272/1‑148 (MQ=255)                                                                                                                                   cACGTTCTCGCGCAGGCCCTGGCGCAGAAACTCAACCAGCTTCGATTGCAAGGCAATGGCCAGGTCAGTCTCCGGATCACCGCCAGCTACATAGGCACCCACGCTGATCAGGTCGCGGCTTTGCGACAGGCGCGACCACAGTTGCTTg                   >  6:49197/1‑148 (MQ=255)                                                                                                                                    aCGTTCTCGCGCAGGCCCTGGCGCAGAAACTCAACCAGCTTCGATTGCAAGGCAATGGCCAGGTCAGTCTCCGGATCACCGCCAGCTACATAGGCACCCACGCTGATCAGGTCGCGGCTTTGCGACAGGCGCGACCACAGTTGCTTGaa                 <  5:339284/149‑1 (MQ=255)                                                                                                                                     cGTTCTCGCGCAGGCCCTGGCGCAGAAACTCAACCAGCTTCGATTGCAAGGCAATGGCCAGGTCAGTCTCCGGATCACCGCCAGCTACATAGGCACCCACGCTGATCAGGTCGCGGCTTTGCGACAGGCGCGACCACAGTTGCTTGAAc                <  5:55994/149‑1 (MQ=255)                                                                                                                                          tcGCGCAGGCCCTGGCGCAGAAACTCAACCAGCTTCGATTGCAAGGCAATCGCCAGGTCAGTCTCCGGATCACCGCCAGCTAGAAAGGCCCCCCCGCTGATCAGGTCGCGGCTTTTCGACAGGCGCGCCAACAGTTTCTTGAACTTCt            >  7:176391/1‑148 (MQ=255)                                                                                                                                            gcgcAGGCCCTGGCGCAGAAACTCAACCAGCTTCGATTGCAAGGCAATGGCCAGGTCAGTCTCCGGATCACCGCCAGCTACATAGGCACCCACGCTGATCAGGTCGCGGCTTTGCGACAGGCGCGACCACAGTTGCTTGAACTTCt            <  3:203738/146‑1 (MQ=255)                                                                                                                                            gcgcAGGCCCTGGCGCAGAAACTCAACCAGCTTCGATTGCAAGGCAATGGCCAGGTCAGTCTCCGGATCACCGCCAGCTACATAGGCACCCACGCTGATCAGGTCGCGGCTTTGCGACAGGCGCGACCACAGTTGCTTGAACTTCt            >  4:203738/1‑146 (MQ=255)                                                                                                                                            gcgcAGGCCCTGGCGCAGAAACTCAACCAGCTTCGATTGCAAGGCAATGGCCAGGTCAGTCTCCGGATCACCGCCAGCTACATAGGCACCCACGCTGATCAGGTCGCGGCTTTGCGACAGGCGCGACCACAGTTGCTTGAACTTCTgcg         >  2:171047/1‑149 (MQ=255)                                                                                                                                                 ggCCCtggcgcagagccgcgaacagctgggggcgattttcacgccccggcaggttgataagccatggcgctgcccggacgtgccgcgcgcctggcgccggtggtggacatggccgaagaggccgagcgcaaggcggctcagcgccttgg    >  4:304933‑M2/1‑5 (MQ=255)                                                                                                                                                 ggCCCTGGCGCAGAAACTCAACCAGCTTCGATTGCAAGGCAATGGCCAGGTCAGTCTCCGGATCACCGCCAGCTACATAGGCACCCACGCTGATCAGGTCGCGGCTTTGCGACAGGCGCGACCACAGTTGCTTGAACTTCTGCGCCTgg    <  6:157234/149‑1 (MQ=255)                                                                                                                                                    ccTGGCGCAGAAACTCAACCAGCTTCGATTGCAAGGCAATGGCCAGGTCAGTCTCCGGATCACCGCCAGCTACATAGGCACCCACGCTGATCAGGTCGCGGCTTTGCGACAGGCGCGACCACAGTTGCTTGAACTTCTGCGCCTGgcg  >  5:353987/1‑148 (MQ=255)                                                                                                                                                     |                                                                                                                                                   CGCTCGGCCTCTTCGGCCATGTCCACCACCGGCGCCAGGCGCGCGGCACGTCCGGGCAGCGCCATGGCTTATC‑AACCTGCCGGGGGCGTG‑AAAATCGCCCCCAGCTGTTCGCGGCTCTGCGCCATGCCCACGTTCTCGCGCAGGCCCTGGCGCAGAAACTCAACCAGCTTCGATTGCAAGGCAATGGCCAGGTCAGTCTCCGGATCACCGCCAGCTACATAGGCACCCACGCTGATCAGGTCGCGGCTTTGCGACAGGCGCGACCACAGTTGCTTGAACTTCTGCGCCTGGCG  >  NC_002947/4955310‑4955602

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.