New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5375060 =	45 (0.730)	3 (0.050)	3/252	NT	6.4%	coding (381/1128 nt)	dnaJ	chaperone protein DnaJ
	?	NC_002947	5375151 =	45 (0.770)					coding (290/1128 nt)	dnaJ	chaperone protein DnaJ

GATGTGTTCAGCGACTTCTTCGGTGGCGGTGGTCGCGGTGGTGGTCGAGGCGGTGCCCAGCGCGGCAGCGACCTGCGCTACACCCTGGAGCTGAAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5375155‑5375060 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gctgaacACATCGCCGAAGATGTCGGAGAAATTGGCACCACCAAAGCCGGCACCACCGCCACCCATGCTTGGGTCGACACCTGCATGGCCATACTGGTCGAAGGCCGCACGCTTGCTCGCGTCTGACAGCACTTCGTAGGCCTCGTTGGCCT  >  NC_002947/5375151‑5375295                                                                                                                                                                                                                                                   GATGTGTTCAGCGACTTCTTCGGTGGCGGTGGTCGCGGTGGTGGTCGAGGCGGTGCCCAGCGCGGCAGCGACCTGCGCTACACCCTGGAGCTGAACACATCGCCGAAGATGTCGGAGAAATTGGCACCACCAAAGCCGGCACCACCGC                                                                                               >  3:34408/1‑148         CAGCGACTTCTTCGGTGGCGGTGGTCGCGGTGGTGGTCGAGGCGGTGCCCAGCGCGGCAGCGCCCTGCGCTACCCCCTGGAGCTGAACACATCGCCGAAGATGTCGGAGAAATTGGC                                                                                                                      >  2:17005/1‑117                     CGGTGGCGGTGGTCGCGGTGGTGGTCGAGGCGGTGCCCAGCGCGGCAGCGACCTGCGCTACACCCTGGAGCTGAACACATCGCCGAAGATGTCGGAGAAATTGGCACCACCAAAGCCGGCACCACCGCCACCCATGCTTGGGTCGA                                                                             <  4:34408/146‑1                                                                                            TGAACACATCGCCGAAGATGTCGGAGAAATTGGCACCACCAAAGCCGGCACCACCGCCACCCATGCTTGGGTCGACACCTGCATGGCCATACTGGTCGAAGGCCGCACGCTTGCTCGCGTCTGACAGCACTTCGTAGGCCTCGTTGGCC   >  7:25461/1‑149                                                                                             GAACACATCGCCGAAGATGTCGGAGAAATTGGCACCACCAAAGCCGGCAACACCGCCACCCATGCTTGGGTCGACACCTGCATGGCCATACTGGTCGAAGGCCGCACGCTTGCTCGCGTCTGACAGCACTTCGTAGGCCTCGTTGGCCT  >  7:70820/1‑149                                                                                                                                                                                                                                                   GATGTGTTCAGCGACTTCTTCGGTGGCGGTGGTCGCGGTGGTGGTCGAGGCGGTGCCCAGCGCGGCAGCGACCTGCGCTACACCCTGGAGCTGAAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5375155‑5375060 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gctgaacACATCGCCGAAGATGTCGGAGAAATTGGCACCACCAAAGCCGGCACCACCGCCACCCATGCTTGGGTCGACACCTGCATGGCCATACTGGTCGAAGGCCGCACGCTTGCTCGCGTCTGACAGCACTTCGTAGGCCTCGTTGGCCT  >  NC_002947/5375151‑5375295

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.