New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5375060 =	45 (0.730)	3 (0.050)	3/252	NT	6.4%	coding (381/1128 nt)	dnaJ	chaperone protein DnaJ
	?	NC_002947	5375151 =	45 (0.770)					coding (290/1128 nt)	dnaJ	chaperone protein DnaJ

GCATGCGCACCTGGCCGATGCCGCCACATGTCGGGCAGGTCGACGGGGTCGAACCCTTCTTGGCACCGGAACCGTCGCAAGGCTGGCAGTTGACCAGGGTGGGCACGCGGATACTGACCGTGGTGCCACGCACCGCTTCTTCCAGGTTCAG‑CTCCAGGGTGTAGCGCAGGTCGCTGCCGCGCTGGGCACCGCCTCGACCACCACCGCGACCACCGCCACCGAAGAAGTCGCTGAACACATCGCCGAAGATGTCGGAGAAATTGGCACCACCAAAGCCGGCACCACCGCCA  >  NC_002947/5374915‑5375204                                                                                                                                                  |                                                                                                                                                  aggccaacgaggcctacgaagtgctgtcagacgcgagcaagcgtgcggccttcgaccagtatggccatgcaggtgtcgacccaagcatgggtggcggtgttgccggctttggtggtgccaatttctccgacatcttcggcgatgtGTTc                                                                                                                                                >  7:70820‑M1/146‑149 (MQ=255)  ggccaacgaggcctacgaagtgctgtcagacgcgagcaagcgtgcggccttcgaccagtatggccatgcaggtgtcgacccaagcatgggtggcggtggtgccggctttggtggtgccaatttctccgacatcttcggcgatgtGTTCa                                                                                                                                               >  7:25461‑M1/145‑149 (MQ=255)  cATGCGCACCTGGCCGATGCCGCCACATGTCGGGCAGGTCGACGGGGTCGAACCCTTCTTGGCACCGGAACCGTCGCAAGGCTGGCAGTTGACCAGGGTGGGCACGCGGATACTGACCGTGGTGCCACGCACCGCTTCTTCCAGGtt                                                                                                                                                 <  2:109869/147‑1 (MQ=255)       gcACCTGGCCGATGCCGCCACATGTCGGGCAGGTCGACGGGGTCGAACCCTTCTTGGCACCGGAACCGTCGCAAGGCTGGCAGTTGACCAGGGTGGGCACGCGGATACTGACCGTGGTGCCACGCACCGCTTCTTCCAGGTTCAG‑c                                                                                                                                            >  8:221650/1‑146 (MQ=255)       gcACCTGGCCGATGCCGCCACATGTCGGGCAGGTCGACGGGGTCGAACCCTTCTTGGCACCGGAACCGTCGCAAGGCTGGCAGTTGACCAGGGTGGGCACGCGGATACTGACCGTGGTGCCACGCACCGCTTCTTCCAGGTTCAG‑c                                                                                                                                            <  7:221650/146‑1 (MQ=255)          ccTGGCCGATGCCGCCACATGTCGGGCAGGTCGACGGTGTCGAACCCTTCTTGGCACCGGAACCGTCGCAAGGCTGGCAGTTGACCAGGGTGGGCACGCGGATACTGACCGTGGTGCCACGCACCGCTTCTTCCAGTTTCAG‑CTCCAgg                                                                                                                                      <  6:362224/149‑1 (MQ=255)           cTGGCCGATGCCGCCACATGTCGGGCAGGTCGACGGGGTCGAACCCTTCTTGGCACCGGAACCGTCGCAAGGCTGGCAGTTGACCAGGGTGGGCACGCGGATACTGACCGTGGTGCCACGCACCGCTTCTTCCAGGTTCAG‑CTCCAggg                                                                                                                                     >  1:137841/1‑149 (MQ=255)             ggCCGATGCCGCCACATGTCGGGCAGGTCGACGGGGTCGAACCCTTCTTGGCACCGGAACCGTCGCAAGGCTGGCAGTTGACCAGGGTGGGCACGCGGATACTGACCGTGGTGCCACGCACCGCTTCTTCCAGGTTCAG‑CTCCAGGgtg                                                                                                                                   >  2:177924/1‑149 (MQ=255)              gCCGATGCCGCCACATGTCGGGCAGGTCGACGGGGTCGAACCCTTCTTGGCACCGGAACCGTCGCAAGGCTGGCAGTTGACCAGGGTGGGCACGCGGATACTGACCGTGGTGCCACGCACCGCTTCTTCCAGGTTCAG‑CTCCAGGgtgt                                                                                                                                  <  6:285581/149‑1 (MQ=255)               ccGATGCCGCCACATGTCGGGCAGGTCGACGGGGTCGAACCCTTCTTGGCACCGGAACCGTCGCAAGGCTGGCAGTTGACCAGGGTGGGCACGCGGATACTGACCGTGGTGCCACGCACCGCTTCTTCCAGGTTCAG‑CTCCAGGgtg                                                                                                                                   >  6:196039/1‑147 (MQ=255)                 gATGCCGCCACATGTCGGGCAGGTCGACGGGGTCGAACCCTTCTTGGCACCGGAACCGTCGCAAGGCTGGCAGTTGACCAGGGTGGGCACGCGGATACTGACCGTGGTGCCACGCACCGCTTCTTCCAGGTTCAG‑CTCCAGGGTGTAgc                                                                                                                               >  4:350489/1‑149 (MQ=255)                 gATGCCGCCACATGTCGGGCAGGTCGACGGGGTCGAACCCTTCTTGGCACCGGAACCGTCGCAAGGCTGGCAGTTGACCAGGGTGGGCACGCGGATACTGACCGTGGTGCCACGCACCGCTTCTTCCAGGTTCAG‑CTCCAGGGTGTAgc                                                                                                                               <  1:63970/149‑1 (MQ=255)                      cgccACATGTCGGGCAGGTCGACGGGGTCGAACCCTTCTTGGCACCGGAACCGTCGCAAGGCTGGCAGTTGACCAGGGTGGGCACGCGGATACTGACCGTGGTGCCACGCACCGCTTCTTCCAGGTTCAG‑CTCCAGGGTGTAGCGCAgg                                                                                                                          <  7:58079/149‑1 (MQ=255)                       gccACATGTCGGGCAGGTCGACGGGGTCGAACCCTTCTTGGCACCGGAACCGTCGCAAGGCTGGCAGTTGACCAGGGTGGGCACGCGGATACTGACCGTGGTGCCACGCACCGCTTCTTCGAGGTTCAG‑CTCCAGGGTGTAGCGCAGGt                                                                                                                         <  5:122438/149‑1 (MQ=255)                          acaTGTCGGGCAGGTCGACGGGGTCGAACCCTTCTTGGCACCGGAACCGTCGCAAGGCTGGCAGTTGACCAGGGTGGGCACGCGGATACTGACCGTGGTGCCACGCACCGCTTCTTCCAGGTTCAG‑CTCCAGGGTGTAGCGCAGGTCGc                                                                                                                      <  7:41674/149‑1 (MQ=255)                               tCGGGCAGGTCGACGGGGTCGAACCCTTCTTGGCACCGGAACCGTCGCAAGGCTGGCAGTTGACCAGGGTGGGCACGCGGATACTGACCGTGGTGCCACGCACCGCTTCTTCCAGGTTCAG‑CTCCAGGGTGTAGCGCAGGTCGCTGCcg                                                                                                                 >  4:252163/1‑149 (MQ=255)                                  ggCAGGTCGACGGGGTCGAACCCTTCTTGGCACCGGAACCGTCGCAAGGCTGGCAGTTGACCAGGGTGGGCACGCGGATACTGACCGTGGTGCCACGCACCGCTTCTTCCAGGTTCAG‑CTCCAGGGTGTAGCGCAGGTCGCTGCCgcgc                                                                                                              >  1:294768/1‑149 (MQ=255)                                   gCAGGTCGACGGGGTCGAACCCTTCTTGGCACCGGAACCGTCGCAAGGCTGGCAGTTGACCAGGGTGGGCACGCGGATACTGACCGTGGTGCCACGCACCGCTTCTTCCAGGTTCAG‑CTCCAGGGTGTAGCGCAGGTCGCTGCCGCGCt                                                                                                             <  2:171804/149‑1 (MQ=255)                                    cAGGTCGACGGGGTCGAACCCTTCTTGGCACCGGAACCGTCGCAAGGCTGGCAGTTGACCAGGGTGGGCACGCGGATACTGACCGTGGTGCCACGCACCGCTTCTTCCAGGTTCAG‑CTCCAGGGTGTAGCGCAGGTCGCTGCCGCGCTg                                                                                                            <  2:137841/149‑1 (MQ=255)                                       gTCGACGGGGTCGAACCCTTCTTGGCACCGGAACCGTCGCAAGGCTGGCAGTTGACCAGGGTGGGCACGCGGATACTGACCGTGGTGCCACGCACCGCTTCTTCCAGGTTCAG‑CTCCAGGGTGTAGCGCAGGTCGCTGCCGCGCTggg                                                                                                          >  7:44986/1‑148 (MQ=255)                                        tCGACGGGGTCGAACCCTTCTTGGCACCGGAACCGTCGCAAGGCTGGGAGTTGACCAGGGTGGGCACGCGGATACTGACCGTGGTGCCACGCACCGCTTCTTCCAGGTTCAG‑CTCCAGGGTGTAGCGCCGGTCGCTGCCGCGCTGGGCa                                                                                                        >  2:108443/1‑149 (MQ=255)                                               ggTCGAACCCTTCTTGGCACCGGAACCGTCGCAAGGCTGGCAGTTGACCAGGGTGGGCACGCGGATACTGACCGTGGTGCCACGCACCGCTTCTTCCAGGTTCAG‑CTCCAGGGTGTAGCGCAGGTCGCTGCCGCGCTGGGCACCGCCTc                                                                                                 <  8:132709/149‑1 (MQ=255)                                                gTCGAACCCTTCTTGGCACCGGAACCGTCGCAAGGCTGGCAGTTGACCAGGGTGGGCACGCGGATACTGACCGTGGTGCCACGCACCGCTTCTTCCAGGTTCAG‑CTCCAGGGTGTAGCGCAGGTCGCTGCCGCGCTGGGCACCGCCTCg                                                                                                >  7:40408/1‑149 (MQ=255)                                                         ttcttGGCACCGGAACCGTCGCAAGGCTGGCAGTTGACCAGGGTGGGCACGCGGATACTGACCGTGGTGCCACGCACCGCTTCTTCCAGGTTCAG‑CTCCAGGGTGTAGCGCAGGTCGCTGCCGCGCTGGGCACCGCCTCGaccaccacc                                                                                       >  6:31248/1‑149 (MQ=255)                                                               gCACCGGAACCGTCGCAAGGCTGGCAGTTGACCAGGGTGGGCACGCGGATACTGACCGTGGTGCCACGCACCGCTTCTTCCAGGTTCAG‑CTCCAGGGTGTAGCGCAGGTCGCTGCCGCGCTGGGCACCGCCTCGACCACCACCGCGacc                                                                                 <  8:44986/149‑1 (MQ=255)                                                               gCACCGGAACCGTCGCAAGGCTGGCAGTTGACCAGGGTGGGCACGCGGATACTGACCGTGGTGCCACGCACCGCTTCTTCCAGGTTCAG‑CTCCAGGGTGTAGCGCAGGTCGCTGCCGCGCTGGGCACCGCCTCGACCACCACCGCGac                                                                                  <  3:252163/148‑1 (MQ=255)                                                                 aCCGGAACCGTCGCAAGGCTGGCAGTTGACCAGGGTGGGCACGCGGATACTGACCGTGGTGCCACGCACCGCTTCTTCCAGGTTCAG‑CTCCAGGGTGTAGCGCAGGTCGCTGCCGCGCTGGGCACCGCCTCGACCACCACCGCGaccac                                                                               >  3:100079/1‑149 (MQ=255)                                                                            tcgacccaagcatgggtggcggtggtgccggctttggtggtgccaatttctccgacatcttcggcgatgtGTTCAG‑CTCCAGGGTGTAGCGCAGGTCGCTGCCGCGCTGGGCACCGCCTCGACCACCACCGCGAccaccgccaccg                                                                       <  4:34408‑M1/76‑1 (MQ=255)                                                                             gCAAGGCTGGGAGTTGACCAGGGTGGGCACGCGGATACTGACCGTGGTGCCACGCACCGCTTCTTCCAGGTTCAG‑CTCCAGGGTGTAGCGCAGGTCGCTGCCGCGCTGGGCACCGCCTCGACCACCACCGCGACCACCGCCACCgaag                                                                    <  3:297767/148‑1 (MQ=255)                                                                             gCAAGGCTGGCAGTTGACCAGGGTGGGCACGCGGATACTGACCGTGGTGCCACGCACCGCTTCTTCCAGGTTCAG‑CTCCAGGGTGTAGCGCAGGTCGCTGCCGCGCTGGGCACCGCCTCGACCACCACCGCGACCACCGCCACCgaag                                                                    <  3:350489/148‑1 (MQ=255)                                                                               aaGGCTGGCAGTTGACCAGGGTGGGCACGCGGATACTGACCGTGGTGCCACGCACCGCTTCTTCCAGGTTCAG‑CTCCAGGGTGTAGCGCAGGTCGCTGCCGCGCTGGGCACCGCCTCGACCACCACCGCGACCACCGCCACCGaagaag                                                                 >  5:300290/1‑149 (MQ=255)                                                                                   cTGGCAGTTGACCAGGGTGGGCACGCGGATACTGACCGTGGTGCCACGCACCGCTTCTTCCAGGTTCAG‑CTCCAGGGTGTAGCGCAGGTCGCTGCCGCGCTGGGCACCGCCTCGACCACCACCGCGACCACCGCCACCGAAGAAGTCGc                                                             >  7:348893/1‑149 (MQ=255)                                                                                      gCAGTTGACCAGGGTGGGCACGCGGATACTGACCGTGGTGCCACGCACCGCTTCTTCCAGGTTCAG‑CTCCAGGGTGTAGCGCAGGTCGCTGCCGCGCTGGGCACCGCCTCGACCACCACCGCGACCACCGCCACCGAAGAAGTCGCt                                                            <  8:40408/147‑1 (MQ=255)                                                                                            gACCAGGGTGGGCACGCGGATACTGACCGTGGTGCCACGCACCGCTTCTTCCAGGTTCAG‑CTCCAGGGTGTAGCGCAGGTCGCTGCCGCGCTGGGCACCGCCTCGACCACCACCGCGACCACCGCCACCgaa                                                                     >  3:347234/1‑132 (MQ=255)                                                                                            gACCAGGGTGGGCACGCGGATACTGACCGTGGTGCCACGCACCGCTTCTTCCAGGTTCAG‑CTCCAGGGTGTAGCGCAGGTCGCTGCCGCGCTGGGCACCGCCTCGACCACCACCGCGACCACCGCCACCgaa                                                                     <  4:347234/132‑1 (MQ=255)                                                                                              gcggtggtgccggctttggtggtgccaatttctccgacatcttcggcgatgtGTTCAG‑CTCCAGGGTGTAGCGCAGGTCGCTGCCGCGCTGGGCACCGCCTCGACCACCACCGCGACCACCGCCACCGAAGAAGTCGCTGAACACATc                                                   >  3:34408‑M1/53‑148 (MQ=255)                                                                                                     gggCACGCGGATACTGACCGTGGTGCCACGCACCGCTTCTTCCAGGTTCAG‑CTCCAGGGTGTAGCGCAGGTCGCTGCCGCGCTGGGCACCGCCTCGACCACCACCGCGACCACCGCCACCCAAGAAGTCGCTGAACACATCGCCg                                               >  6:17303/1‑145 (MQ=255)                                                                                                          cgcgGATACTGACCGTGGTGCCACGCACCGCTTCTTCCAGGTTCAG‑CTCCAGGGTGTAGCGCAGGTCGCTGCCGCGCTGGGCACCGCCTCGACCACCACCGCGACCACCGCCACCGAAGAAGTCGCTGAACACATCGCCGAAGATGTCg                                      <  5:31248/149‑1 (MQ=255)                                                                                                           gcgGATACTGACCGTGGTGCCACGCACCGCTTCTTCCAGGTTCAG‑CTCCAGGGTGTAGCGCAGGTCGCTGCCGCGCTGGGCACCGCCTCGACCACCACCGCGACCACCGCCACCGAAGAAGTCGCTGAACACATCGCCGAAGATGTCgg                                     <  6:34934/149‑1 (MQ=255)                                                                                                           gcgGATACTGACCGTGGTGCCACGCACCGCTTCTTCCAGGTTCAG‑CTCCAGGGTGTAGCGCAGGTCGCTGCCGCGCTGGGCACCGCCTCGACCACCACCGCGACCACCGCCACCGAAGAAGTCGCTGAACACATCGCCGAAGATGTCg                                      >  8:41721/1‑148 (MQ=255)                                                                                                           gcgGATACTGACCGTGGTGCCACGCACCGCTTCTTCCAGGTTCAG‑CTCCAGGGTGTAGCGCAGGTCGCTGCCGCGCTGGGCACCGCCTCGACCACCACCGCGACCACCGCCACCGAAGAAGTCGCTGAACACATCGCCGAAGATGTCg                                      <  7:41721/148‑1 (MQ=255)                                                                                                                  cTGACCGTGGTGCCACGCACCGCTTCTTCCAGGTTCAG‑CTCCAGGGTGTAGCGCAGGTCGCTGCCGCGCTGGGCACCGCCTCGACCACCACCGCGACCACCGCCACCGAAGAAGTCGCTGAACACATCGCCGAAGATGTCGGAGAAAt                               <  5:196039/148‑1 (MQ=255)                                                                                                                  cTGACCGGGGTGCCACGCACCGGTTCTTCCAGGTTCAGCCAGTAGGGTGTAGCGCAGGTCGCTGCCGCGCTGGGCACCGCCTCGACCACCACCGCGACCACCGCCACCGAAGAAGTCGCTGAACACATCGCCGAAGATGTCGGAGAAAt                               <  1:131119/149‑1 (MQ=255)                                                                                                                     gccaatttctccgacatcttcggcgatgtGTTCAG‑CTCCAGGGGGTAGCGCAGGGCGCTGCCGCGCTGGGCACCGCCTCGACCACCACCGCGACCACCGCCACCGAAGAAGTCGCTg                                                           >  2:17005‑M1/30‑117 (MQ=255)                                                                                                                     aCCGTGGTGCCACGCACCGCTTCTTCCAGGTTCAG‑CTCCAGGGTGTAGCGCAGGTCGCTGCCGCGCTGGGCACCGCCTCGACCACCACCGCGACCACCGCCACCGAAGAAGTCGCTGAACACATCGCCGAAGATGTCGGAGAAATTGGc                           <  4:100079/149‑1 (MQ=255)                                                                                                                              ccACGCACCGCTTCTTCCAGGTTCAG‑CTCCAGGGTGTAGCGCAGGTCGCTGCCGCGCTGGGCACCGCCTCGACCACCACCGCGACCACCGCCACCGAAGAAGTCGCTGAACACATCGCCGAAGATGTCGGAGAAATTGGCACCACCaaa                  <  2:356422/149‑1 (MQ=255)                                                                                                                              ccACGCACCGCTTCTTCCAGGTTCAG‑CTCCAGGGTGTAGCGCAGGTCGCTGCCGCGCTGGGCACCGCCTCGACCACCACCGCGACCACCGCCACCGAAGAAGTCGCTGAACACATCGCCGAAGATGTCGGAGAAATTGGCACCACCaaa                  <  2:126222/149‑1 (MQ=255)                                                                                                                               cACGCACCGCTTCTTCCAGGTTCAG‑CTCCAGGGTGTAGCGCAGGTCGCTGCCGCGCTGGGCACCGCCTCGACCACCACCGCGACCACCGCCACCGAAGAAGTCGCTGAACACATCGCCGAAGATGTCGGAGCAATTGGCACCACCAAAg                 >  3:250580/1‑149 (MQ=255)                                                                                                                                   cACCGCTTCTTCCAGGTTCAG‑CTCCAGGGTGTAGCGCAGGTCGCTGCCGCGCTGGGCACCGCCTCGACCACCACCGCGACCACCGCCACCGAAGAAGTCGCTGAACACATCGCCGAAGATGTCGGAGAAATTGGcaccac                      <  5:189603/140‑1 (MQ=255)                                                                                                                                   cACCGCTTCTTCCAGGTTCAG‑CTCCAGGGTGTAGCGCAGGTCGCTGCCGCGCTGGGCACCGCCTCGACCACCACCGCGACCACCGCCACCGAAGAAGTCGCTGAACACATCGCCGAAGATGTCGGAGAAATTGGcaccac                      >  6:189603/1‑140 (MQ=255)                                                                                                                                           cttcCAGGTTCAG‑CTCCAGGGTGTAGCGCAGGTCGCTGCCGCGCTGGGCACCGCCTCGACCACCACCGCGACCACCGCCACCGAAGAAGTCGCTGAACACATCGCCGAAGATGTCGGAGAAATTGGCACCACCAAAGCCGGcaccac       <  6:300290/147‑1 (MQ=255)                                                                                                                                             tcCAGGTTCAG‑CTCCAGGGTGTAGCGCAGGTCGCTGCCGCGCTGGGCACCGCCTCGACCACCACCGCGACCACCGCCACCGAAGAAGTCGCTGAACACATCGCCGAAGATGTCGGAGAAATTGGCACCACCAAAGCCGGCACCACCGc    >  1:7874/1‑148 (MQ=255)                                                                                                                                              ccAGGTTCAG‑CTCCAGGGTGTAGCGCAGGTCGCTGCCGCGCTGGGCACCGCCTCGACCACCACCGCGACCACCGCCACCGAAGAAGTCGCTGAACACATCGCCGAAGATGTCGGAGAAATTGGcacca                       <  2:387360/128‑1 (MQ=255)                                                                                                                                              ccAGGTTCAG‑CTCCAGGGTGTAGCGCAGGTCGCTGCCGCGCTGGGCACCGCCTCGACCACCACCGCGACCACCGCCACCGAAGAAGTCGCTGAACACATCGCCGAAGATGTCGGAGAAATTGGcacca                       >  1:387360/1‑128 (MQ=255)                                                                                                                                              ccAGGTTCAG‑CTCCAGGGTGTAGCGCAGGTCGCTGCCGCGCTGGGCACCGCCTCGACCACCACCGCGACCACCGCCACCGAAGAAGTCGCTGAACACATCGCCGAAGATGTCGGAGAAATTGGCAGCACCAAAGCCAGCACCCCCGCCa  >  2:351413/1‑149 (MQ=255)                                                                                                                                              ccAGGTTCAG‑CTCCAGGGTGTAGCGCAGGTCGCTGCCGCGCTGGGCACCGCCTCGACCACCACCGCGACCACCGCCACCGAAGAAGTCGCTGAACACATCGCCGAAGATGTCGGAGAAATTGGCACCACCAAAGCCGGCACCACCGc    <  2:294768/147‑1 (MQ=255)                                                                                                                                                  |                                                                                                                                                  GCATGCGCACCTGGCCGATGCCGCCACATGTCGGGCAGGTCGACGGGGTCGAACCCTTCTTGGCACCGGAACCGTCGCAAGGCTGGCAGTTGACCAGGGTGGGCACGCGGATACTGACCGTGGTGCCACGCACCGCTTCTTCCAGGTTCAG‑CTCCAGGGTGTAGCGCAGGTCGCTGCCGCGCTGGGCACCGCCTCGACCACCACCGCGACCACCGCCACCGAAGAAGTCGCTGAACACATCGCCGAAGATGTCGGAGAAATTGGCACCACCAAAGCCGGCACCACCGCCA  >  NC_002947/5374915‑5375204

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.