New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5375060 =	45 (0.730)	3 (0.050)	3/252	NT	6.4%	coding (381/1128 nt)	dnaJ	chaperone protein DnaJ
	?	NC_002947	5375151 =	45 (0.770)					coding (290/1128 nt)	dnaJ	chaperone protein DnaJ

CCAGGGTGGGCACGCGGATACTGACCGTGGTGCCACGCACCGCTTCTTCCAGGTTCAG‑CTCCAGGGTGTAGCGCAGGTCGCTGCCGCGCTGGGCACCGCCTCGACCACCACCGCGACCACCGCCACCGAAGAAGTCGCTGAACACATCGCCGAAGATGTCGGAGAAATTGGCACCACCAAAGCCGGCACCACCGCCACCCATGCTTGGGTCGACACCTGCATGGCCATACTGGTCGAAGGCCGCACGCTTGCTCGCGTCTGACAGCACTTCGTAGGCCTCGTTGGCCTCCTT  >  NC_002947/5375008‑5375299                                                                                                                                                 |                                                                                                                                                     gcggtggtgccggctttggtggtgccaatttctccgacatcttcggcgatgtGTTCAG‑CTCCAGGGTGTAGCGCAGGTCGCTGCCGCGCTGGGCACCGCCTCGACCACCACCGCGACCACCGCCACCGAAGAAGTCGCTGAACACATc                                                                                                                                                  >  3:34408‑M1/53‑148 (MQ=255)        gggCACGCGGATACTGACCGTGGTGCCACGCACCGCTTCTTCCAGGTTCAG‑CTCCAGGGTGTAGCGCAGGTCGCTGCCGCGCTGGGCACCGCCTCGACCACCACCGCGACCACCGCCACCCAAGAAGTCGCTGAACACATCGCCg                                                                                                                                              >  6:17303/1‑145 (MQ=255)             cgcgGATACTGACCGTGGTGCCACGCACCGCTTCTTCCAGGTTCAG‑CTCCAGGGTGTAGCGCAGGTCGCTGCCGCGCTGGGCACCGCCTCGACCACCACCGCGACCACCGCCACCGAAGAAGTCGCTGAACACATCGCCGAAGATGTCg                                                                                                                                     <  5:31248/149‑1 (MQ=255)              gcgGATACTGACCGTGGTGCCACGCACCGCTTCTTCCAGGTTCAG‑CTCCAGGGTGTAGCGCAGGTCGCTGCCGCGCTGGGCACCGCCTCGACCACCACCGCGACCACCGCCACCGAAGAAGTCGCTGAACACATCGCCGAAGATGTCgg                                                                                                                                    <  6:34934/149‑1 (MQ=255)              gcgGATACTGACCGTGGTGCCACGCACCGCTTCTTCCAGGTTCAG‑CTCCAGGGTGTAGCGCAGGTCGCTGCCGCGCTGGGCACCGCCTCGACCACCACCGCGACCACCGCCACCGAAGAAGTCGCTGAACACATCGCCGAAGATGTCg                                                                                                                                     >  8:41721/1‑148 (MQ=255)              gcgGATACTGACCGTGGTGCCACGCACCGCTTCTTCCAGGTTCAG‑CTCCAGGGTGTAGCGCAGGTCGCTGCCGCGCTGGGCACCGCCTCGACCACCACCGCGACCACCGCCACCGAAGAAGTCGCTGAACACATCGCCGAAGATGTCg                                                                                                                                     <  7:41721/148‑1 (MQ=255)                     cTGACCGTGGTGCCACGCACCGCTTCTTCCAGGTTCAG‑CTCCAGGGTGTAGCGCAGGTCGCTGCCGCGCTGGGCACCGCCTCGACCACCACCGCGACCACCGCCACCGAAGAAGTCGCTGAACACATCGCCGAAGATGTCGGAGAAAt                                                                                                                              <  5:196039/148‑1 (MQ=255)                     cTGACCGGGGTGCCACGCACCGGTTCTTCCAGGTTCAGCCAGTAGGGTGTAGCGCAGGTCGCTGCCGCGCTGGGCACCGCCTCGACCACCACCGCGACCACCGCCACCGAAGAAGTCGCTGAACACATCGCCGAAGATGTCGGAGAAAt                                                                                                                              <  1:131119/149‑1 (MQ=255)                        aCCGTGGTGCCACGCACCGCTTCTTCCAGGTTCAG‑CTCCAGGGTGTAGCGCAGGTCGCTGCCGCGCTGGGCACCGCCTCGACCACCACCGCGACCACCGCCACCGAAGAAGTCGCTGAACACATCGCCGAAGATGTCGGAGAAATTGGc                                                                                                                          <  4:100079/149‑1 (MQ=255)                                 ccACGCACCGCTTCTTCCAGGTTCAG‑CTCCAGGGTGTAGCGCAGGTCGCTGCCGCGCTGGGCACCGCCTCGACCACCACCGCGACCACCGCCACCGAAGAAGTCGCTGAACACATCGCCGAAGATGTCGGAGAAATTGGCACCACCaaa                                                                                                                 <  2:126222/149‑1 (MQ=255)                                 ccACGCACCGCTTCTTCCAGGTTCAG‑CTCCAGGGTGTAGCGCAGGTCGCTGCCGCGCTGGGCACCGCCTCGACCACCACCGCGACCACCGCCACCGAAGAAGTCGCTGAACACATCGCCGAAGATGTCGGAGAAATTGGCACCACCaaa                                                                                                                 <  2:356422/149‑1 (MQ=255)                                  cACGCACCGCTTCTTCCAGGTTCAG‑CTCCAGGGTGTAGCGCAGGTCGCTGCCGCGCTGGGCACCGCCTCGACCACCACCGCGACCACCGCCACCGAAGAAGTCGCTGAACACATCGCCGAAGATGTCGGAGCAATTGGCACCACCAAAg                                                                                                                >  3:250580/1‑149 (MQ=255)                                      cACCGCTTCTTCCAGGTTCAG‑CTCCAGGGTGTAGCGCAGGTCGCTGCCGCGCTGGGCACCGCCTCGACCACCACCGCGACCACCGCCACCGAAGAAGTCGCTGAACACATCGCCGAAGATGTCGGAGAAATTGGcaccac                                                                                                                     <  5:189603/140‑1 (MQ=255)                                      cACCGCTTCTTCCAGGTTCAG‑CTCCAGGGTGTAGCGCAGGTCGCTGCCGCGCTGGGCACCGCCTCGACCACCACCGCGACCACCGCCACCGAAGAAGTCGCTGAACACATCGCCGAAGATGTCGGAGAAATTGGcaccac                                                                                                                     >  6:189603/1‑140 (MQ=255)                                              cttcCAGGTTCAG‑CTCCAGGGTGTAGCGCAGGTCGCTGCCGCGCTGGGCACCGCCTCGACCACCACCGCGACCACCGCCACCGAAGAAGTCGCTGAACACATCGCCGAAGATGTCGGAGAAATTGGCACCACCAAAGCCGGcaccac                                                                                                      <  6:300290/147‑1 (MQ=255)                                                tcCAGGTTCAG‑CTCCAGGGTGTAGCGCAGGTCGCTGCCGCGCTGGGCACCGCCTCGACCACCACCGCGACCACCGCCACCGAAGAAGTCGCTGAACACATCGCCGAAGATGTCGGAGAAATTGGCACCACCAAAGCCGGCACCACCGc                                                                                                   >  1:7874/1‑148 (MQ=255)                                                 gatgtgttcagcgacttcttcggtggcggtggtcgcggtggtggtcgaggcggtgcccagcgcggcagcgacctgcgctacaccctggagctgaacACATCGCCGAAGATGTCGGAGAAATTGGCACCACCAAAGCCGGCACCACCGc                                                                                                   >  3:34408‑M2/97‑148 (MQ=255)                                                 ccAGGTTCAG‑CTCCAGGGTGTAGCGCAGGTCGCTGCCGCGCTGGGCACCGCCTCGACCACCACCGCGACCACCGCCACCGAAGAAGTCGCTGAACACATCGCCGAAGATGTCGGAGAAATTGGcacca                                                                                                                      <  2:387360/128‑1 (MQ=255)                                                 ccAGGTTCAG‑CTCCAGGGTGTAGCGCAGGTCGCTGCCGCGCTGGGCACCGCCTCGACCACCACCGCGACCACCGCCACCGAAGAAGTCGCTGAACACATCGCCGAAGATGTCGGAGAAATTGGcacca                                                                                                                      >  1:387360/1‑128 (MQ=255)                                                 ccAGGTTCAG‑CTCCAGGGTGTAGCGCAGGTCGCTGCCGCGCTGGGCACCGCCTCGACCACCACCGCGACCACCGCCACCGAAGAAGTCGCTGAACACATCGCCGAAGATGTCGGAGAAATTGGCAGCACCAAAGCCAGCACCCCCGCCa                                                                                                 >  2:351413/1‑149 (MQ=255)                                                 ccAGGTTCAG‑CTCCAGGGTGTAGCGCAGGTCGCTGCCGCGCTGGGCACCGCCTCGACCACCACCGCGACCACCGCCACCGAAGAAGTCGCTGAACACATCGCCGAAGATGTCGGAGAAATTGGCACCACCAAAGCCGGCACCACCGc                                                                                                   <  2:294768/147‑1 (MQ=255)                                                         cagcgacttcttcggtggcggtggtcgcggtggtggtcgaggcggtgcccagcgcggcagcgccctgcgctaccccctggagctgaacACATCGCCGAAGATGTCGGAGAAATTGGc                                                                                                                          >  2:17005‑M2/89‑117 (MQ=255)                                                               cAGGGTGTAGCGCAGGTCGCTGCCGCGCTGGGCACCGCCTCGACCACCACCGCGACCACCGCCACCGAAGAAGTCGCTGAACACATCGCCGAAGATGTCGGAGAAATTGGCACCACCAAAGCCGGCACCACCGCCACCCATGCTTGGGt                                                                                    >  6:283511/1‑149 (MQ=255)                                                               cAGGGTGTAGCGCAGGTCGCTGCCGCGCTGGGCACCGCCTCGACCACCACCGCGACCACCGCCACCGAAGAAGTCGCTGAACACATCGCCGAAGATGTCGGAGAAATTGGCACCACCAAAGCCGGCACCACCGCCACCCATGCTTGGGt                                                                                    <  1:177924/149‑1 (MQ=255)                                                                    tgtAGCGCAGGTCGCTGCCGCGCTGGGCACCGCCTCGACCACCACCGCGACCACCGCCACCGAAGAAGTCGCTGCACACATCGCCGAAGATGTCGGAGCAATTGGCACCACCAAAGCCGGCACCCCCGCCACCCATGCTTGGGTCGaca                                                                               >  6:75502/1‑149 (MQ=255)                                                                     cggtggcggtggtcgcggtggtggtcgaggcggtgcccagcgcggcagcgacctgcgctacaccctggagctgaacACATCGCCGAAGATGTCGGAGAAATTGGCACCACCAAAGCCGGCACCACCGCCACCCATGCTTGGGTCGa                                                                                 <  4:34408‑M2/70‑1 (MQ=255)                                                                        gcgcAGGTCGCTGCCGCGCTGGGCACCGCCTCGACCACCACCGCGACCACCGCCACCGAAGAAGTCGCTGAACACATCGCCGAAGATGTCGGAGAAATTGGCACCACCAAAGCCGGCACCACCGCCACCCATGCTTGGGTCGACACCt                                                                            <  8:348893/148‑1 (MQ=255)                                                                        gcgcAGGTCGCTGCCGCGCTGGGCACCGCCTCGACCACCACCGCGACCACCGCCACCGAACAAGTCGCTGAACACATCGCCGAAGGACTCGGAGAAATTGGCACCACCAACGCCGGCCCCCACGCCACCCAAGCGTGGGTCGACACCTg                                                                           >  3:37939/1‑149 (MQ=255)                                                                         cgcAGGTCGCTGCCGCGCTGGGCACCGCCTCGACCACCACCGCGACCACCGCCACCGAAGAAGTCGCTGAACACATCGCCGAAGATGTCGGAGAAATTGGCACCACCAAAGCCGGCACCACCGCCACCCATGCTTGGGTCGACACCTg                                                                           >  8:19500/1‑148 (MQ=255)                                                                         cgcAGGTCGCTGCCGCGCTGGGCACCGCCTCGACCACCACCGCGACCACCGCCACCGAAGAAGTCGCTGAACACATCGCCGAAGATGTCGGAGAAATTGGCACCACCAAAGCCGGCACCACCGCCACCCATGCTTGGGTCGACACCTg                                                                           >  3:266169/1‑148 (MQ=255)                                                                                cGCTGCCGCGCTGGGCAGCGCCTCGACCACCACCGCGACCACCGCCACCGAAGAAGTCGCTGAACAGATCGCCGAAGATTTCGGAGAAATTGGCACCACCAAAGCCGGCACCACCGCCACCCATGCTTGGTTCGACACCTGCATGGCCa                                                                   <  1:108443/149‑1 (MQ=255)                                                                                cGCTGCCGCGCTGGGCACCGCCTCGACCACCACCGCGACCACCGCCACCGAAGAAGTCGCTGAACACATCGCCGAAGATGTCGGAGAAATTGGCACCACCAAAGCCGGCACCACCGCCACCCATGCTTGGGTCGACACCTGCATGGCCa                                                                   >  6:67392/1‑149 (MQ=255)                                                                                     ccGCGCTGGGCACCGCCTCGACCACCACCGCGACCACCGCCACCGAAGAAGTCGCTGAACACATCGCCGAAGATGTCGGAGAAATTGGCACCACAAAAGCAGGCACCAACGCCACCCAAGCTTGGGTCGACACCTGCATGCCCATACTg                                                              >  4:228616/1‑149 (MQ=255)                                                                                             ggCACCGCCTCGACCACCACCGCGCCCACCGCCACCGAAGAAGTCGCTGAACACATCGCCGAAGATGTCGGAGAAATTGGCACCACCAAAGCCGGCACCACCGCCACCCATGCTTGGGTCGACACCTGCATGGCCATACTGGTCGAAgg                                                      >  7:111595/1‑149 (MQ=255)                                                                                                   gCCTCGACCACCACCGCGACCACCGCCACCGAAGAAGTCGCTGAACACATCGCCGAAAAGGGCGGTGAAAATGGCCCCACCCAAGCCCGCACCCCCCCCCACCCTGCGTGGGTCGCCACCAGCCAGGCCCTACTGGGACAAGGCCGccc                                                >  1:300382/1‑147 (MQ=255)                                                                                                    ccTCGACCCCCACCGCGACCACCGCCACCGAAGAACGCGCTGAACACATCGCCGAAGGTGTCGGAGAAATTGGCACCACCAAAGCCGGCACCACCGCCACCCATGCTTGGGTCGACACCTGCATGGCCATACTGGTCGAAGGCCGCACg                                               <  4:37939/149‑1 (MQ=255)                                                                                                        gACCACCACCGCGACCACCGCCACCGAAGAAGTCGCTGAACACATCGCCGAAGATGTCGGAGAAATTGGCACCACCAAAGCCGGCACCACCGCCACCCATGCTTGGGTCGACACCTGCATGGCCATACTGGTCGAAGGCCGCACGCTTg                                           >  3:111268/1‑149 (MQ=255)                                                                                                         accaccaccGCGACCACCGCCACCGAAGAAGTCGCTGAACACATCGCCGAAGATGTCGGAGAAATTGGCACCACCAAAGCCGGCACCACCGCCACCCATGCTTGGGTCGACACCTGCATGGCCATACTGGt                                                            >  2:122753/1‑131 (MQ=255)                                                                                                         accaccaccGCGACCACCGCCACCGAAGAAGTCGATGAACACATCGCCGAAGATGTCGGAGAAATTGGCACCACCAAAGCCGGCACCACCGCCACCCATGCTTGGGTCGACACCTGCATGGCCATACTGGt                                                            <  1:122753/131‑1 (MQ=255)                                                                                                           caccaccGCGACCACCGCCACCGAAGAAGTCGCTGAACACATCGCCGAAGATGTCGGAGAAATTGGCACCACCAAAGCCGGCACCACCGCCACCCATGCTTGGGTCGACACCTGCATGGCCATACTGGTCGAAGGCCGCACGCTTGCTc                                        >  7:124414/1‑149 (MQ=255)                                                                                                             ccaccGCGACCACCGCCACCGAAGAAGTCGCTGAACACATCGCCGAAGATGTCGGAGAAATTGGCACCACCAAAGCCGGCACCACCGCCACCCATGCTTGGGTCGACACCTGCAGGGCCAGACTGGTCGAAGGCCGCACGCTTGCTcgc                                      >  5:224411/1‑149 (MQ=255)                                                                                                                    gACCACCGCCACCGAAGAAGTCGCTGAACACATCGCCGAAGATGTCGGAGAAATTGGCACCACCAAAGCCGGCACCACCGCCACCCATGCTTGGGTCGACACCTGCATGGCCATACTGGTCGAAGGcc                                                    <  7:276328/128‑1 (MQ=255)                                                                                                                    gACCACCGCCACCGAAGAAGTCGCTGAACACATCGCCGAAGATGTCGGAGAAATTGGCACCACCAAAGCCGGCACCACCGCCACCCATGCTTGGGTCGACACCTGCATGGCCATACTGGTCGAAGGcc                                                    >  8:276328/1‑128 (MQ=255)                                                                                                                      ccaccgccaccgAAGAAGTCGCTGAACACATCGCCGAAGATGTCGGAGAAATTGGCCCCACCAAAGCCGGCACCACCGCCACCCATGCTTGGGTCGCCACCTGCATGGCCATACTGGTCGAAGGCCGCACGCTTGCTCGCGTCTGACAg                             >  4:50934/1‑149 (MQ=255)                                                                                                                               cggaagaaGTCGCTGAAGAGATCGTCGAAGATGTCGTAGAAATTGGCAGCAGGTAAGACGGCACCACCGCCACCCTTGCTTGGGTCGACACCTGCATGGAGTTACTGGTCGAATGCCGCAAGGTTGCTCGCTTCTGAGAGCACTTCGTa                    <  8:111595/147‑1 (MQ=255)                                                                                                                                cgAAGAAGTCGCTGAACACATCGCCGAAGATGTCGGAGAAATTGGCACCACCAAAGCCGGCACCACCGCCACCCATGCTTGGGTCGACACCTGCATGGCCATACTGGTCGAAGGCCGCACGCTTGCTCGCGTCTGACAGCACTTCGTAg                   >  2:286704/1‑149 (MQ=255)                                                                                                                                cgAAGAAGTCGCTGAACACATCGCCGAAGATGTCGGAGAAATTGGCACCACCAAAGCCGGCACCACCGCCACCCATGCTTGGGTCGACACCTGCATGGCCATACTGGTCGAAGGCCGCACGCTTGCTCGCGTCTGACAGCACTTCGTAg                   <  5:67392/149‑1 (MQ=255)                                                                                                                                cgAAGAAGTCGCTGAACACATCGCCGAAGATGTCGGAGAAATTGGCACCACCAAAGCCGGCACCACCGCCACCCATGCTTGGGTCGACACCTGCATGGCCATACTGGTCGAAGGCCGCACGCTTGCTCGCGTCTGACAGCACTTCGTAg                   >  1:86874/1‑149 (MQ=255)                                                                                                                                cgAAGAAGTCGCTGAACACATCGCCGAAGATGTCGGAGAAATTGGCACCACCAAAGCCGGCACCACCGCCACCCATGCTTGGGTCGACACCTGCATGGCCATACTGGTCGAAGGCCGCACGCTTGCTCGCGTCTGACAGCACTTCGTAg                   <  4:266169/149‑1 (MQ=255)                                                                                                                                        tCGCTGAACACATCGCCGAAGATGTCGGAGAAATTGGCACCACCAAAGCCGGCACCACCGCCACCCATGCTTGGGTCGACACCTGCATGGCCATACTGGTCGAAGGCCGCACGCTTGCTCGCGTCTGACAGCACTTCGTAGGCCTCGtt           <  5:283511/149‑1 (MQ=255)                                                                                                                                            tgaacACATCGCCGAAGATGTCGGAGAAATTGGCACCACCAAAGCCGGCACCACCGCCACCCATGCTTGGGTCGACACCTGCATGGCCATACTGGTCGAAGGCCGCACGCTTGCTCGCGTCTGACAGCACTTCGTAGGCCTCGTTGGcc       >  7:25461‑M2/6‑149 (MQ=255)                                                                                                                                             gaacACATCGCCGAAGATGTCGGAGAAATTGGCACCACCAAAGCCGGCAACACCGCCACCCATGCTTGGGTCGACACCTGCATGGCCATACTGGTCGAAGGCCGCACGCTTGCTCGCGTCTGACAGCACTTCGTAGGCCTCGTTGGcct      >  7:70820‑M2/5‑149 (MQ=255)                                                                                                                                                 acaTCGCCGAAGATGTCGGAGAAATTGGCACCACCAAAGCCGGCACCACCGCCACCCATGCTTGGGTCGACACCTGCATGGCCATACTGGTCGAAGGCCGCACGCTTGCTCGCGTCTGACAGCACTTCGTAGGCCTCGTTGGCCTCCtt  >  3:37269/1‑149 (MQ=255)                                                                                                                                                 |                                                                                                                                                     CCAGGGTGGGCACGCGGATACTGACCGTGGTGCCACGCACCGCTTCTTCCAGGTTCAG‑CTCCAGGGTGTAGCGCAGGTCGCTGCCGCGCTGGGCACCGCCTCGACCACCACCGCGACCACCGCCACCGAAGAAGTCGCTGAACACATCGCCGAAGATGTCGGAGAAATTGGCACCACCAAAGCCGGCACCACCGCCACCCATGCTTGGGTCGACACCTGCATGGCCATACTGGTCGAAGGCCGCACGCTTGCTCGCGTCTGACAGCACTTCGTAGGCCTCGTTGGCCTCCTT  >  NC_002947/5375008‑5375299

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.