New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5781028 =	60 (0.970)	4 (0.070)	4/254	NT	7.2%	coding (1332/1794 nt)	cvrA	K(+)/H(+) antiporter NhaP
	?	NC_002947	5781123 =	46 (0.780)					coding (1427/1794 nt)	cvrA	K(+)/H(+) antiporter NhaP

AGGGCCGGCAGGTTGTGTTCGTGGCCGATCACGCAGAGCATGTCGCCAACCTCCAGCACGGTGCTGCCCGACGGGTGCAGCAGTTGCTCACCACGGAACAGCGCGGCAATCCGCGTGCCTTCGGGCATTTTCAGTTCGCGCAGGGCGGCACCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5781180‑5781028 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcaccgTGCTGGAGGTTGGCGACATGCTCTGCGTGATCGGCCACGAACACAACCTGCCGGCCCTCGGTAAGTTGTTCAGCCAGGCGCCACAGCGTGGCCTGGACCTGCGCTTCTTCGGCGACTTCGTGCTCGAAGGCGATGCCGAACTGGGT  >  NC_002947/5781123‑5781268                                                                                                                                                                                                                                                                                                             AGGGCCGGCAGGTTGTGTTCGTGGCCGATCACGCAGAGCATGTCGCCAACCTCCAGCACGGTGCTGCCCGACGGGTGCAGCAGTTGCTCACCACGGAACAGCGCGGCAATCCGCGTGCCTTCGGGCATTTTCAGTTCGCGCAGGGCGG                                                                                                                                                         >  7:248549/1‑148  GGGCCGGCAGGTTGTGTTCGTGGCCGATCACGCAGAGCATGTCGCCAACCTCCAGCACGGTGCTGCCCGACGGGTGCAGCAGTTGCTCACCACGGAACAGCGCGGCAATCCGCGTGCCTTCGGGCATTTTCAGTTCGCGCAGGGCGGCA                                                                                                                                                       <  3:328781/149‑1   GGCCGGCAGGTTGTGTTCGTGGCCGATCACGCAGAGCATGTCGCCAACCTCCAGCACGGTGCTGCCCGACGGGTGCAGCAGTTGCTCACCACGGAACAGCGCGGCAATCCGCGTGCCTTCGGGCATTTTCAGTTCGCGCAGGGCGGCAC                                                                                                                                                      <  8:87780/149‑1     CCGGCAGGTTGTGTTCGTGGCCGATCACGCAGAGCATGTCGCCAACCTCCAGCACGGTGCTGCCCGACGGGTGCAGCAGTTGCTCACCACGGAACAGCGCGGCAATCCGCGTGCCTTCGGGCATTTTCAGTTCGCGCAGGGCGGCACC                                                                                                                                                     >  1:39307/1‑148     CCGGCAGGTTGTGTTCGTGGCCGATCACGCAGAGCATGTCGCCAACCTCCAGCACGGTGCTGCCCGACGGGTGCAGCAGTTGCTCACCACGGAACAGCGCGGCAATCCGCGTGCCTTCGGGCATTTTCAGTTCGCGCAGGGCGGCACC                                                                                                                                                     >  8:192259/1‑148                                                       AGCACGGTGCTGCCCGACGGGTGCAGCAGTTGCTCACCACGGAACAGCGCGGCAATCCGCGTGCCTTCGGGCATTTTCAGTTCGCGCAGGGCGGCACCGTGCTGGAGGTTGGCGACATGCTCTGCGTGATCGGCCACGAACACACCCTG                                                                                                  >  2:172689/1‑149                                                             GTGCTGCCCGACGGGTGCAGCAGTTGCTCACCACGGAACAGCGCGGCAATCCGCGTGCCTTCGGGCATTTTCAGTTCGCGCAGGGCGGCACCGTGCTGGAGGTTGGCGCCATGCTCTGCGTGATCGGCCACGAACACCACCTGCCGGCC                                                                                            >  7:290465/1‑149                                                                                               GGAACAGCGCGGCAATCCGCGTGCCTTCGGGCATTTTCAGTTCGCGCAGGGCGGCACCGTGCTGGAGGTTGGCGACATGCTCTGCGTGATCGGCCACGAACACAACCTGCCGGCCCTCGGTAAGTTGTTCAGCCAGGCGCCACAGCGTG                                                          >  7:305846/1‑149                                                                                                                              CATTTTCAGTTCGCGCAGGGCGGCACCGTGCTGGAGGTTGGCGACATGCTCTGCGTGATCGGCCACGAACACAACCTGCCGGCCCTCGGTAAGTTGTTCAGCCAGGCGCCACAGCGTGGCCTGGACCTGCGCTTCTTCGGCGACTTCGT                           <  1:172689/149‑1                                                                                                                                                       CCGTGCTGGAGGTTGGCGACATGCTCTGCGTGATCGGCCACGAACACAACCTGCCGGCCCTCGGTAAGTTGTTCAGCCAGGCGCCACAGCGTGGCCTGGACCTGCGCTTCTTCGGCGACTTCGTGCTCGAAGGCGATGCCGAACTGGGT  >  4:379953/1‑149                                                                                                                                                                                                                                                                                                             AGGGCCGGCAGGTTGTGTTCGTGGCCGATCACGCAGAGCATGTCGCCAACCTCCAGCACGGTGCTGCCCGACGGGTGCAGCAGTTGCTCACCACGGAACAGCGCGGCAATCCGCGTGCCTTCGGGCATTTTCAGTTCGCGCAGGGCGGCACCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5781180‑5781028 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcaccgTGCTGGAGGTTGGCGACATGCTCTGCGTGATCGGCCACGAACACAACCTGCCGGCCCTCGGTAAGTTGTTCAGCCAGGCGCCACAGCGTGGCCTGGACCTGCGCTTCTTCGGCGACTTCGTGCTCGAAGGCGATGCCGAACTGGGT  >  NC_002947/5781123‑5781268

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.