New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5858910	41 (0.660)	3 (0.050)	3/258	NT	6.5%	intergenic (+88/+50)	PP_5134/PP_5135	hypothetical protein/ABC transporter substrate‑binding protein
	?	NC_002947	= 5858936	46 (0.770)					intergenic (+114/+24)	PP_5134/PP_5135	hypothetical protein/ABC transporter substrate‑binding protein

GGCCAAGCTGAATCAGGCTGAGCGGCAGGAGCAGTTGGAGGCGCTGGTTTCACAGATTTGAGCCAGCAGGGTTGGCCTCTTCGCGGGTAAACCCGCTCCTACGGGCGGCCTTTGTACAACCACCGATGTGCGTCCACCACCAATCCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5858762‑5858910 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggcCTCTTCGCGGGTAAACCCGCTCCTACGCCGGATTGGTGGTG  <  NC_002947/5858936‑5858896                                                                                                                                                                                                GGCCAAGCTGAATCAGGCTGAGCGGCAGGAGCAGTTGGAGGCGCTGGTTTCACAGATTTGAGCCAGCAGGGTTGGCCTCTTCGCGGGTAAACCCGCTCCTACGGGCGGCCTTTGTACAACCACCGATGTGCGTCCACCACCAATCCGGC                                           <  3:300426/149‑1                                  GTTGGAGGCGCTGGTGTCACAGATTTGAGCCAGCAGGGTTGGCCTCTTCGCGGGTAAACCCGCTCCTACGGGCGGCCTTTGTACAACCACCGATGTGCGTCCACCACCAATCCGGCCTCTTCGCGGGTAAACCCGCTCCTACGCCGGAT          <  6:67409/149‑1                                      GAGGCGCTGGTTTCACAGATTTGAGCCAGCAGGGTTGGCCTCTTCGCGGGTAAACCCGCTCCTACGGGCGGCCTTTGTACAACCACCGATGTGCGTCCACCACCAATCCGGCCTCTTCGCGGGTAAACCCGCTCCTACGCCGGATTGG       <  8:226796/148‑1                                          CGCTGGTTTCACAGATTTGAGCCAGCAGGGTTGGCCTCTTCGCGGGTAAACCCGCTCCTACGGGCGGCCTTTGTACAACCACCGATGTGCGTCCACCACCAATCCGGCCTCTTCGCGGGTAAACCCGCTCCTACGCCGGATTGGTGGTG  <  2:213035/149‑1                                                                                                                                                                                                GGCCAAGCTGAATCAGGCTGAGCGGCAGGAGCAGTTGGAGGCGCTGGTTTCACAGATTTGAGCCAGCAGGGTTGGCCTCTTCGCGGGTAAACCCGCTCCTACGGGCGGCCTTTGTACAACCACCGATGTGCGTCCACCACCAATCCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5858762‑5858910 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggcCTCTTCGCGGGTAAACCCGCTCCTACGCCGGATTGGTGGTG  <  NC_002947/5858936‑5858896

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.