New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5858910	41 (0.660)	3 (0.050)	3/258	NT	6.5%	intergenic (+88/+50)	PP_5134/PP_5135	hypothetical protein/ABC transporter substrate‑binding protein
	?	NC_002947	= 5858936	46 (0.770)					intergenic (+114/+24)	PP_5134/PP_5135	hypothetical protein/ABC transporter substrate‑binding protein

ACAGATTTGAGCCAGCAGGGTTGGCCTCTTCGCGGGTAAACCCGCTCCTACGGGCGGCCTTTGTACAACCAC‑CGATGTGCGTCCACCACCAATCCGGCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGACCCTGCAATAGTGAAGCGTTACTGCTGGGCCACCTTCTCCGACTTGCCGTCATAGCGCTTG‑CGCCATTCGGCCAGAATCTGGTCACGGTTTTTAGAAGCCCAGACAAAGTCGTTCTTGATCAACCGCTGCTCATAATCCGCCG  >  NC_002947/5858813‑5859084                                                                                                                             |                                                                                                                                                      acaGATTTGAGCCAGCAGGGTTGGCCTCTTCGCGGGTAAACCCGCTCCTACGGGCGGCCTTTGTACAACCAC‑CGATGTGCGTCCACCACCAATCCGGCGTAGGAGCGGGGTTACCCGCGAAGAGGCCGACCCTGCAATa                                                                                                                                        >  5:105160/1‑139 (MQ=255)                             ttCGCGGGTAAACCCGCTCCTACGGGCGGCCTTTGTACAACCACGCGATGTGCGTCCACCACCAATCCGGCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGACCCTGCAATAGTGAAGCGTTACTGCTGGGCCACCTTCTCCGACTTGc                                                                                                   >  1:79921/1‑149 (MQ=255)                                         cccGCTCCTACGGGCGGCCTTTGTACAACCAC‑CGATGTGCGTCCACCACCAATCCGGCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGACCCTGCAATAGTGAAGCGTTACTGCTGGGCCACCTTCTCCGACTTGCCGTCATAGCGCtt                                                                                      >  6:371661/1‑149 (MQ=255)                                          ccGCTCCTACGGGCGGCCTTTGTACAACCAC‑CGATGTGCGTCCACCACCAATCCGGCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGACCCTGCAATAGTGAAGCGTTACTGCTGGGCCACCTTCTCCGACTTGCCGTCATAGCGCTTg                                                                                     >  5:315781/1‑149 (MQ=255)                                          ccGCTCCTACGGGCGGCCTTTGTACAACCAC‑CGATGTGCGTCCACCACCAATCCGGCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGACCCTGCAATAGTGAAGCGTTACTGCTGGGCCACCTTCTCCGACTTGCCGTCATAGCGCTTg                                                                                     >  2:320994/1‑149 (MQ=255)                                                cTACGGGCGGCCTTTGTACAACCAC‑CGATGTGCGTCCACCACCAATCCGGCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGACCCTGCAATAGTGAAGCGTTACTGCTGGGCCACCTTCTCCGACTTGCCGTCATATCGCTTG‑CGCCAt                                                                              >  8:346943/1‑149 (MQ=255)                                                cTACGGGCGGCCTTTGTACAACCAC‑CGATGTGCGTCCACCACCAATCCGGCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGACCCTGCAATAGTGAAGCGTTACTGCTGGGCCACCTTCTCCGACTTGCCGTCATAGCGCTTG‑CGCCAt                                                                              >  8:12486/1‑149 (MQ=255)                                                  aCGGGCGGCCTTTGTACAACCAC‑CGATGTGCGTCCACCACCAATCCGGCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGACCCTGCAATAGTGAAGCGTTACTGCTGGGCCACCTTCTCCGACTTGCCGTCATAGCGCTTG‑CGCCa                                                                               <  4:194875/146‑1 (MQ=255)                                                  aCGGGCGGCCTTTGTACAACCAC‑CGATGTGCGTCCACCACCAATCCGGCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGACCCTGCAATAGTGAAGCGTTACTGCTGGGCCACCTTCTCCGACTTGCCGTCATAGCGCTTG‑CGCCa                                                                               >  3:194875/1‑146 (MQ=255)                                                   cGGGCGGCCTTTGTACAACCAC‑CGATGTGCGTCCACCACCAATCCGGCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGACCCTGCAATAGTGAAGCGTTACTGCTGGGCCACCTTCTCCGACTTGCCGTCATAGCGCTTG‑CGCCATTCg                                                                           <  6:315781/149‑1 (MQ=255)                                                          ccTTTGTACAACCAC‑CGATGTGCGTCCACCACCAATCCGGCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGACCCTGCAATAGTGAAGCGTTACTGCTGGGCCACCTTCTCCGa                                                                                                        >  4:150369/1‑114 (MQ=255)                                                          ccTTTGTACAACCAC‑CGATGTGCGTCCACCACCAATCCGGCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGACCCTGCAATAGTGAAGCGTTACTGCTGGGCCACCTTCTCCGa                                                                                                        <  3:150369/114‑1 (MQ=255)                                                           cTTTGTACAACCAC‑CGATGTGCGTCCACCACCAATCCGGCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGACCCTGCAATAGTGAAGCGTTACTGCTGGGCCACCTTCTCCGACTTGCCGTCATAGCGCTTG‑CGCCATTCGGCCAGAAt                                                                   >  5:253444/1‑149 (MQ=255)                                                            tttGTACAACCAC‑CGATGTGCGTCCACCACCAATCCGGCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGACCCTGCAATAGTGAAGCGTTACTGCTGGGCCACCTTCTCCGACTTGCCGTCATAGCGCTTG‑CGCCATTCGGCCAGAATc                                                                  >  8:87692/1‑149 (MQ=255)                                                               gTACAACCAC‑CGATGTGCGTCCACCACCAATCCGGCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGACCCTGCAATAGTGAAGCGTTACTGCTGGGCCACCTTCTCCGACTTGCCGTCATAGCGCTTG‑CGCCATTCGGCCAGAATCTgg                                                               >  5:86467/1‑149 (MQ=255)                                                                tACAACCAC‑CGATGTGCGTCCACCACCAATCCGGCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGACCCTGCAATAGTGAAGCGTTACTGCTGGGCCACCTTCTCCGACTTGCCGTCATAGCGCTTG‑CGCCATTCGGCCAGAATCTGGt                                                              >  4:205326/1‑149 (MQ=255)                                                                   aaCCAC‑CGATGTGCGTCCACCACCAATCCGGCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGACCCTGCAATAGTGAAGCGTTACTGCTGGGCCACCTTCTCCGACTTGCCGTCATAGCGCTTG‑CGCCATTCgg                                                                          >  3:372549/1‑134 (MQ=255)                                                                   aaCCAC‑CGATGTGCGTCCACCACCAATCCGGCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGACCCTGCAATAGTGAAGCGTTACTGCTGGGCCACCTTCTCCGACTTGCCGTCATAGCGCTTG‑CGCCATTCgg                                                                          <  4:372549/134‑1 (MQ=255)                                                                     ccac‑aGATGTGCGTCCACCACCAATCAGGCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGACCCTGCAATAGTGAAGCGTTACTGCTGGGCCACCTTCTCCGACTTGCCTTCATAGCGCTTG‑CGCCATTCGGCCAGAATCTGGTCACgg                                                         >  4:136893/1‑149 (MQ=255)                                                                      cac‑cGATGTGCGTCCACCACCAATCCGGCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGACCCTGCAATAGTGAAGCGTTACTGCTGGGCCACCTTCTCCGACTTGCCGTCATAGCGCTTG‑CGCCATTCGGCCAGAAGCTGGTCACGGt                                                        >  8:129778/1‑149 (MQ=255)                                                                      cac‑cGATGTGCGTCCACCACCAATCCGGCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGACCCTGCAATAGTGAAGCGTTACTGCTGGGCCACCTTCTCCGACTTGCCGTCATAGCGATTG‑CGCCATTCGGCCAGAATCTGGTCACGGt                                                        >  4:36159/1‑149 (MQ=255)                                                                      cac‑cGATCTGCGTCCACCACCAATCCGGCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGACCCTGCAATAGTGAAGCGTTACTGCTGGGCCACCTTCTCCGACTTGCCGTCATAGCGCTTG‑CGCCATTCGGCCAGAATCTGGTCACGGt                                                        >  7:251776/1‑149 (MQ=255)                                                                       ac‑cGATGTGCGTCCACCACCAATCCGGCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGACCTTGCAATAGTGGAGCGTTACTGCTGGGCCACCTTCTCCGACTTGCCGTCATAGCGCTTG‑CGCCATTCGGCCAGAATCTGGTCACGGtt                                                       >  2:305533/1‑149 (MQ=255)                                                                       ac‑cGATGTGCGTCCACCACCAATCCGGCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGACCCTGCAATAGTGAAGCGTTACTGCTGGGCCACCTTCTCCGACTTGCCGTCATAGCGCTTG‑CGCCATTCGGCCTGAATCTGGTCACgggt                                                       >  8:303740/1‑147 (MQ=255)                                                                           gATGTGCGTCCACCACCAATCCGGCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGACCCTGCAATAGTGAAGCGTTACTGCTGGGCCACCTTCTCCGACTTGCCGTCATAGCGCTTG‑CGCCATTCGGCCAGAATCTGGTCACGGttttt                                                    <  8:251776/149‑1 (MQ=255)                                                                                  gTCCACCACCAATCCGGCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGACCCTGCAATAGTGAAGCGTTACTGCTGGGCCACCTTCTCCGACTTGCCGTCATAGCGCTTG‑CGCCATTCGGCCAGAATCTGGTCACGGTTTTTAGAAGcc                                             >  2:74779/1‑149 (MQ=255)                                                                                     caccaccaATCCGGCGTAGGAGCGGGTTTACCCGCGAAGAGgccggattggtggtggacgcacatcggtggttgtacaaaggccgcccgtaggagcgggtttacccgcgaagaggccaaccctgctggctcaaatctgtgaaaccagcg                                           <  2:213035‑M2/149‑109 (MQ=255)                                                                                      accaccaATCCGGCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGACCCTGCAATAGTGAAGCGTTACTGCTGGGCCACCTTCTCCGACTTGCCGTCATAGCGCTTG‑CGCCATTCGGCCAGAATCTGGTCACGGTTTTTAGAAGCCCAGa                                         >  2:336371/1‑149 (MQ=255)                                                                                        caccaATCCGGCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGACCCTGCAATAGTGAAGCGTTACTGCTGGGCCACCTTCTCCGACTTGCCGTCATAGCGCTTGCCGCCATTCGGCCAGAATCTGGTCACGGTTTTTAGAAGCCCAGAc                                        <  1:74779/149‑1 (MQ=255)                                                                                        caccaATCCGGCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGACCCTGCAATAGTGAAGCGTTACTGCTGGGCCACCTTCTCCGACTTGCCGTCATAGCGCTTG‑CGCCATTCGGCCAGAATCTGGTCACGGTTTTTAGAAGCCCAGAc                                        >  1:294974/1‑148 (MQ=255)                                                                                          ccaATCCGGCGTAGGAGCGGGTTTACCCGCGAAGAGgccggattggtggtggacgcacatcggtggttgtacaaaggccgcccgtaggagcgggtttacccgcgaagaggccaaccctgctggctcaaatctgtgaaaccagcgcctc                                       <  8:226796‑M2/148‑113 (MQ=255)                                                                                          ccaATCCGGCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGACCCTGCAATAGTGAAGCGTTACTGCTGGGCCACCTTCTCCGACTTGCCGTCATAGCGCTTG‑CGCCATTCGGCCAGAATCTGGTCACGGTTTTTAGAAGCCCAGACaaa                                     <  6:86467/149‑1 (MQ=255)                                                                                           caATCCGGCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGACCCTGCAATAGTGAAGCGTTACTGCTGGGCCACCTTCTCCGACTTGCCGTCATAGCGCTTG‑CGCCATTCGGCCAGAATCTGGTCACGGTTTTTAGAAGCCCAGACAAAg                                    <  7:87692/149‑1 (MQ=255)                                                                                           caATCCGGCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGACCCTGCAATAGTGAAGCGTTACTGCTGGGCCACCTTCTCCGACTTGCCGTCATAGCGCTTG‑CGCCATTCGGCCAGAATCTGGTCACGGTTTTTAGAAGCCCAGACAAAg                                    >  4:47498/1‑149 (MQ=255)                                                                                             aTCCGGCGTAGGAGCGGGTTTACCCGCGAAGAGgccggattggtggtggacgcacatcggtggttgtacaaaggccgcccgtaggagcgggtttacccgcgaagaggccaaccctgctggctcaaatctgtgacaccagcgcctccaac                                   <  6:67409‑M2/149‑117 (MQ=255)                                                                                             aTCCGGCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGACCCTGCAATAGTGAAGCGTTACTGCTGGGCCACCTTCTCCGACTTGCCGTCATAGCGCTTG‑CGCCATTCGGCCAGAATCTGGTCACGGTTTTTAGAAGCCCAGACAAAGTc                                  >  1:264354/1‑149 (MQ=255)                                                                                             aTCCGGCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGACCCTGCAATAGTGAAGCGTTACTGCTGGGCCACCTTCTCCGACTTGCCGTCATAGCGCTTG‑CGCCATTCGGCCAGAATCTGGTCACGGTTTTTAGAAGCCCAGACAAAGTc                                  >  8:31074/1‑149 (MQ=255)                                                                                              tCCGGCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGACCCTGCAATAGTGAAGCGTTACTGCTGGGCCACCTTCTCCGACTTGCCGTCATAGCGCTTG‑CGCTATTCGGCCAGAATCTGGTCACg                                                          >  8:348620/1‑124 (MQ=255)                                                                                              tCCGGCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGACCCTGCAATAGTGAAGCGTTACTGCTGGGCCACCTTCTCCGACTTGCCGTCATAGCGCTTG‑CGCTATTCGGCCAGAATCTGGTCACg                                                          <  7:348620/124‑1 (MQ=255)                                                                                                 ggCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGACCCTGCAATAGTGAAGCGTTACTGCTGGGCCACCTTCTCCGACTTGCCGTCATAGCGCTTG‑CGCCATTCGGCCAGAATCTGGTCACGGTTTTTAGAAGCCCAGACAAAGTCGTTc                              >  1:261914/1‑149 (MQ=255)                                                                                                 ggCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGACCCTGCAATAGTGAAGCGTTACTGCTGGGCCACCTTCTCCGACTTGCCGTCATAGCGCTTG‑CGCCATTCGGCCAGAATCTGGTCACGGTTTTTAGAAGCCCAGACAAAGTCGTTc                              <  7:12486/149‑1 (MQ=255)                                                                                                  gCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGACCCTGCAATAGTGAAGCGTTACTGCTGGGCCACCTTCTCCGACTTGCCGTCATAGCGCTTG‑CGCCATTCGGCCAGAATCTGGTCACGGTTTTTAGAAGCCCAGACAAAGTCGTTCt                             <  3:47498/149‑1 (MQ=255)                                                                                                    gTAGGAGCGGGTTTACCCGCGAAGAGGCCGACCCTGCAATAGTGAAGCGTTACTGCTGGGCCACCTTCTCCGACTTGCCGTCATAGCGCTTG‑CGCCATTCGGCCAGAATCTGGTCACGGTTTTTAGAAGCCCAGACAAAGTCGTTCtt                            >  7:34852/1‑148 (MQ=255)                                                                                                          gCGGGTTTACCCGCGAAGAGGCCGACCCTGCAATAGTGAAGCGTTACTGCTGGGCCACCTTCTCCGACTTGCCGTCATAGCGCTTG‑CGCCATTCGGCCAGAATCTGGTCACGGTTTTTAGAAGCCCAGACAAAGTCGTTCTTGATCAAc                     >  8:235324/1‑149 (MQ=255)                                                                                                              gTTTACCCGCGAAGAGGCCGACCCTGCAATAGTGAAGCGTTACTGCTGGGCCACCTTCTCCGACTTGCCGTCATAGCGCTTg‑cg                                                                                  <  8:95107/84‑1 (MQ=255)                                                                                                              gTTTACCCGCGAAGAGGCCGACCCTGCAATAGTGAAGCGTTACTGCTGGGCCACCTTCTCCGACTTGCCGTCATAGCGCTTg‑cg                                                                                  >  7:95107/1‑84 (MQ=255)                                                                                                                    ccGCGAAGAGGCCGACCCTGCAATAGTGAAGCGTTACTGCTGGGCCACCTTCTCCGACTTGCCGTCATAGCGCTTG‑CGCCATTCGGCCAGAATCTGGTCACGGTTTTTAGAAGCCCAGACAAAGTCGTTCTTGATCAACCGCTGCTCa            >  2:180677/1‑148 (MQ=255)                                                                                                                     cgcgAAGAGGCCGACCCTGCAATAGTGAAGCGTTACTGCTGGGCCACCTTCTCCGACTTGCCGTCATAGCGCTTG‑CGCCATTCGGCCAGAATCTGGTCACGGTTTTTAGAAGCCCAGACAAAGTCGTTCTTGATCAACCGCTGCTCAt           >  3:75404/1‑148 (MQ=255)                                                                                                                      gcgAAGAGGCCGACCCTGCAATAGTGAAGCGTTACTGCTGGGCCACCTTCTCCGACTTGCCGTCATAGCGCTTG‑CGCCATTCGGCCAGAATCTGGTCACGGTTTTTAGAAGCCCAGACAAAGTCGTTCTTGATCAACCGCTGCTCATaa         <  3:205326/149‑1 (MQ=255)                                                                                                                         aaGAGGCCGACCCTGCAATAGTGAAGCGTTACTGCTGGGCCACCTTCTCCGACTTGCCGTCATAGCGCTTG‑CGCCATTCGGCCAGAATCTGGTCACGGTTTTTAGAAGCCCAGACAAAGTCGTTCTTGATCAACCGCTGCTCATAATcc      <  5:371661/149‑1 (MQ=255)                                                                                                                         aaGAGGCCGACCCTGCAATAGTGAAGCGTTACTGCTGGGCCACCTTCTCCGACTTGCCGTCATAGCGCTTG‑CGCCATTCGGCCAGAATCTGGTCACGGTTTTTAGAAGCCCAGACAAAGTCGTTCTTGATCAACCGCTGCTCATAATcc      <  8:34852/149‑1 (MQ=255)                                                                                                                         aaGAGGCCGACCCTGCAATAGTGAAGCGTTACTGCTGGGCCACCTTCTCCGACTTGCCGTCATAGCGCTTG‑CGCCATTCGGCCAGAATCTGGTCACGGTTTTTAGAAGCCCAGACAAAGTCGTTCTTGATCAACCGCTGCTCATAATcc      <  1:180677/149‑1 (MQ=255)                                                                                                                           gagGCCGACCCTGCAATAGTGAAGCGTTACTGCTGGGCCACCTTCTCCGACTTGCCGTCATAGCGCTTG‑CGCCATTCGGCCAGAATCTGGTCACGGTTTTTAGAAGCCCAGACAAAGTCGTTCTTGATCAACCGCTGCTCATAATccgc    <  2:294974/149‑1 (MQ=255)                                                                                                                            agGCCGACCCTGCAATAGTGAAGCGTTACTGCTGGGCCACCTTCTCCGACTTGCCGTCATAGCGCTTG‑CGCCATTCGGCCAGAATCTGGTCACGGTTTTTAGAAGCCCAGACAAAGTCGTTCTTGATCAACCGCTGCTCATAATccgcc   <  1:336371/149‑1 (MQ=255)                                                                                                                            agGCCGACCCTGCAATAGTGAAGCGTTACTGCTGGGCCACCTTCTCCGACTTGCCGTCATAGCGCTTG‑CGCCATTCGGCCAGAATCTGGTCACGGTTTTTAGAAGCCCAGACAAAGTCGTTCATGATCAACCGCTGCTCATAATccgcc   >  1:185261/1‑149 (MQ=255)                                                                                                                             ggCCGACCCTGCAATAGTGAAGCGTTACTGCTGGGCCACCTTCTCCGACTTGCCGTCATAGCGCTTG‑CGCCATTCGGCCAGAATCTGGTCACGGTTTTTAGAAGCCCAGACAAAGTCGTTCTTGATCAACCGCTGCTCATAATccgccg  <  3:136893/149‑1 (MQ=255)                                                                                                                             ggCCGACCCTGCAATAGTGAAGCGTTACTGCTGGGCCACCTTCTCCGACTTGCCGTCATAGCGCTTG‑CGCCATTCGGCCAGAATCTGGTCACGGTTTTTAGAAGCCCAGACAAAGTCGTTCTTGATCAACCGCTGCTCATAATccgccg  <  1:320994/149‑1 (MQ=255)                                                                                                                             |                                                                                                                                                      ACAGATTTGAGCCAGCAGGGTTGGCCTCTTCGCGGGTAAACCCGCTCCTACGGGCGGCCTTTGTACAACCAC‑CGATGTGCGTCCACCACCAATCCGGCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGACCCTGCAATAGTGAAGCGTTACTGCTGGGCCACCTTCTCCGACTTGCCGTCATAGCGCTTG‑CGCCATTCGGCCAGAATCTGGTCACGGTTTTTAGAAGCCCAGACAAAGTCGTTCTTGATCAACCGCTGCTCATAATCCGCCG  >  NC_002947/5858813‑5859084

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.