New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5858910	41 (0.660)	3 (0.050)	3/258	NT	6.5%	intergenic (+88/+50)	PP_5134/PP_5135	hypothetical protein/ABC transporter substrate‑binding protein
	?	NC_002947	= 5858936	46 (0.770)					intergenic (+114/+24)	PP_5134/PP_5135	hypothetical protein/ABC transporter substrate‑binding protein

GGCCAAGCTGAATCAGGCTGAGCGGCAGGAGCAGTTGGAGGCGCTGGTTTCACAGATTTGAGCCAGCAGGGTTGGCCTCTTCGCGGGTAAACCCGCTCCTACGGGCGGCCTTTGTACAACCAC‑CGATGTGCGTCCACCACCAATCCGGCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGACCCTGCAATAGTGAAGCGTTACTGCTGGGCCACCTTCTCCGACTTGCCGTCATAGCGCTTG‑CGCCATTCGGCCAGAATCTGGTCACGGTTTTTAGAAGCCCAGACAAAGTCGTTCT  >  NC_002947/5858762‑5859057                                                                                                                                                      |                                                                                                                                                     ggCCAAGCTGAATCAGGCTGAGCGGCAGGAGCAGTTGGAGGCGCTGGTTTCACAGATTTGAGCCAGCAGGGTTGGCCTCTTCGCGGGTAAACCCGCTCCTACGGGCGGCCTTTGTACAACCAC‑CGATGTGCGTCCACCACCAATCCGGC                                                                                                                                                      <  3:300426‑M1/149‑1 (MQ=255)  gCCAAGCTGAATCAGGCGGAGCGGCAGGAGCAGTTGGAGGCGCTGGTTTCACAGATTTGAGCCAGCAGGGTTGGCCTCTTCGCGGGTAAACCCGCTCCTACGGGCGGCCTTTGTACAACCAC‑CGATGTGCGTCCACCACCAATCCGGCg                                                                                                                                                     <  8:351930/149‑1 (MQ=255)    cAAGCTGAATCAGGCTGAGCGGCAGGAGCAGTTGGAGGCGCTGGTTTCACAGATTTGAGCCAGCAGGGTTGGCCTCTTCGCGGGTAAACCCGCTCCTACGGGCGGCCTTTGTACAACCAC‑CGATGTGCGTCCACCACCAATCCGGCGTa                                                                                                                                                   <  6:164962/149‑1 (MQ=255)     aaGCTGAATCAGGCTGAGCGGCAGGAGCAGTTGGAGGCGCTGGTTTCACAGATTTGAGCCAGCAGGGTTGGCCTCTTCGCGGGTAAACCCGCTCCTACGGGCGGCCTTTGTACAACCAC‑CGATGTGCGTCCACCACCAATCCGGCGTAg                                                                                                                                                  <  7:104083/149‑1 (MQ=255)                 gCTGAGCGGCAGGAGCAGTTGGAGGCGCTGGTTTCACAGATTTGAGCCAGCAGGGTTGGCCTCTTCGCGGGTAAACCCGCTCCTACGGGCGGCCTTTGTACAACCAC‑CGATGTGCGTCCACCACCAATCCGGCGTAGGAGCGGGTTTa                                                                                                                                       <  8:165723/148‑1 (MQ=255)                 gCTGAGCGGCAGGAGCAGTTGGAGGCGCTGGTTTCACAGATTTGAGCCAGCAGGGTTGGCCTCTTCGCGGGTAAACCCGCTCCTACGGGCGGCCTTTGTACAACCAC‑CGATGTGCGTCCACCACCAATCCGGCGTAGGAGCGGGTTTa                                                                                                                                       >  7:165723/1‑148 (MQ=255)                 gCTGAGCGGCAGGAGCAGTTGGAGGCGCTGGTTTCACAGATTTGAGCCAGCAGGGTTGGCCTCTTCGCGGGTAAACCCGCTCCTACGGGCGGCCTTTGTACAACCAC‑CGATGTGCGTCCACCACCAATCCGGCGTAGGAGCGGGTTTAc                                                                                                                                      <  5:301145/149‑1 (MQ=255)                                  gTTGGAGGCGCTGGTGTCACAGATTTGAGCCAGCAGGGTTGGCCTCTTCGCGGGTAAACCCGCTCCTACGGGCGGCCTTTGTACAACCAC‑CGATGTGCGTCCACCACCAATCCGGCctcttcgcgggtaaacccgctcctacgccggat                                                                                                                     <  6:67409‑M1/149‑34 (MQ=255)                                      gAGGCGCTGGTTTCACAGATTTGAGCCAGCAGGGTTGGCCTCTTCGCGGGTAAACCCGCTCCTACGGGCGGCCTTTGTACAACCAC‑CGATGTGCGTCCACCACCAATCCGGCctcttcgcgggtaaacccgctcctacgccggattgg                                                                                                                  <  8:226796‑M1/148‑37 (MQ=255)                                          cgcTGGTTTCACAGATTTGAGCCAGCAGGGTTGGCCTCTTCGCGGGTAAACCCGCTCCTACGGGCGGCCTTTGTACAACCAC‑CGATGTGCGTCCACCACCAATCCGGCctcttcgcgggtaaacccgctcctacgccggattggtggtg                                                                                                             <  2:213035‑M1/149‑42 (MQ=255)                                                    acaGATTTGAGCCAGCAGGGTTGGCCTCTTCGCGGGTAAACCCGCTCCTACGGGCGGCCTTTGTACAACCAC‑CGATGTGCGTCCACCACCAATCCGGCGTAGGAGCGGGTTTACCcgc                                                                                                                                  >  5:100851/1‑118 (MQ=255)                                                    acaGATTTGAGCCAGCAGGGTTGGCCTCTTCGCGGGTAAACCCGCTCCTACGGGCGGCCTTTGTACAACCAC‑CGATGTGCGTCCACCACCAATCCGGCGTAGGAGCGGGTTTACCcgc                                                                                                                                  <  6:100851/118‑1 (MQ=255)                                                    acaGATTTGAGCCAGCAGGGTTGGCCTCTTCGCGGGTAAACCCGCTCCTACGGGCGGCCTTTGTACAACCAC‑CGATGTGCGTCCACCACCAATCCGGCGTAGGAGCGGGGTTACCCGCGAAGAGGCCGACCCTGCAATa                                                                                                             >  5:105160/1‑139 (MQ=255)                                                                                ttCGCGGGTAAACCCGCTCCTACGGGCGGCCTTTGTACAACCACGCGATGTGCGTCCACCACCAATCCGGCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGACCCTGCAATAGTGAAGCGTTACTGCTGGGCCACCTTCTCCGACTTGc                                                                        >  1:79921/1‑149 (MQ=255)                                                                                            cccGCTCCTACGGGCGGCCTTTGTACAACCAC‑CGATGTGCGTCCACCACCAATCCGGCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGACCCTGCAATAGTGAAGCGTTACTGCTGGGCCACCTTCTCCGACTTGCCGTCATAGCGCtt                                                           >  6:371661/1‑149 (MQ=255)                                                                                             ccGCTCCTACGGGCGGCCTTTGTACAACCAC‑CGATGTGCGTCCACCACCAATCCGGCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGACCCTGCAATAGTGAAGCGTTACTGCTGGGCCACCTTCTCCGACTTGCCGTCATAGCGCTTg                                                          >  2:320994/1‑149 (MQ=255)                                                                                             ccGCTCCTACGGGCGGCCTTTGTACAACCAC‑CGATGTGCGTCCACCACCAATCCGGCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGACCCTGCAATAGTGAAGCGTTACTGCTGGGCCACCTTCTCCGACTTGCCGTCATAGCGCTTg                                                          >  5:315781/1‑149 (MQ=255)                                                                                                   cTACGGGCGGCCTTTGTACAACCAC‑CGATGTGCGTCCACCACCAATCCGGCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGACCCTGCAATAGTGAAGCGTTACTGCTGGGCCACCTTCTCCGACTTGCCGTCATATCGCTTG‑CGCCAt                                                   >  8:346943/1‑149 (MQ=255)                                                                                                   cTACGGGCGGCCTTTGTACAACCAC‑CGATGTGCGTCCACCACCAATCCGGCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGACCCTGCAATAGTGAAGCGTTACTGCTGGGCCACCTTCTCCGACTTGCCGTCATAGCGCTTG‑CGCCAt                                                   >  8:12486/1‑149 (MQ=255)                                                                                                     aCGGGCGGCCTTTGTACAACCAC‑CGATGTGCGTCCACCACCAATCCGGCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGACCCTGCAATAGTGAAGCGTTACTGCTGGGCCACCTTCTCCGACTTGCCGTCATAGCGCTTG‑CGCCa                                                    >  3:194875/1‑146 (MQ=255)                                                                                                     aCGGGCGGCCTTTGTACAACCAC‑CGATGTGCGTCCACCACCAATCCGGCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGACCCTGCAATAGTGAAGCGTTACTGCTGGGCCACCTTCTCCGACTTGCCGTCATAGCGCTTG‑CGCCa                                                    <  4:194875/146‑1 (MQ=255)                                                                                                      cGGGCGGCCTTTGTACAACCAC‑CGATGTGCGTCCACCACCAATCCGGCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGACCCTGCAATAGTGAAGCGTTACTGCTGGGCCACCTTCTCCGACTTGCCGTCATAGCGCTTG‑CGCCATTCg                                                <  6:315781/149‑1 (MQ=255)                                                                                                             ccTTTGTACAACCAC‑CGATGTGCGTCCACCACCAATCCGGCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGACCCTGCAATAGTGAAGCGTTACTGCTGGGCCACCTTCTCCGa                                                                             >  4:150369/1‑114 (MQ=255)                                                                                                             ccTTTGTACAACCAC‑CGATGTGCGTCCACCACCAATCCGGCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGACCCTGCAATAGTGAAGCGTTACTGCTGGGCCACCTTCTCCGa                                                                             <  3:150369/114‑1 (MQ=255)                                                                                                              cTTTGTACAACCAC‑CGATGTGCGTCCACCACCAATCCGGCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGACCCTGCAATAGTGAAGCGTTACTGCTGGGCCACCTTCTCCGACTTGCCGTCATAGCGCTTG‑CGCCATTCGGCCAGAAt                                        >  5:253444/1‑149 (MQ=255)                                                                                                               tttGTACAACCAC‑CGATGTGCGTCCACCACCAATCCGGCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGACCCTGCAATAGTGAAGCGTTACTGCTGGGCCACCTTCTCCGACTTGCCGTCATAGCGCTTG‑CGCCATTCGGCCAGAATc                                       >  8:87692/1‑149 (MQ=255)                                                                                                                  gTACAACCAC‑CGATGTGCGTCCACCACCAATCCGGCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGACCCTGCAATAGTGAAGCGTTACTGCTGGGCCACCTTCTCCGACTTGCCGTCATAGCGCTTG‑CGCCATTCGGCCAGAATCTgg                                    >  5:86467/1‑149 (MQ=255)                                                                                                                   tACAACCAC‑CGATGTGCGTCCACCACCAATCCGGCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGACCCTGCAATAGTGAAGCGTTACTGCTGGGCCACCTTCTCCGACTTGCCGTCATAGCGCTTG‑CGCCATTCGGCCAGAATCTGGt                                   >  4:205326/1‑149 (MQ=255)                                                                                                                      aaCCAC‑CGATGTGCGTCCACCACCAATCCGGCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGACCCTGCAATAGTGAAGCGTTACTGCTGGGCCACCTTCTCCGACTTGCCGTCATAGCGCTTG‑CGCCATTCgg                                               <  4:372549/134‑1 (MQ=255)                                                                                                                      aaCCAC‑CGATGTGCGTCCACCACCAATCCGGCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGACCCTGCAATAGTGAAGCGTTACTGCTGGGCCACCTTCTCCGACTTGCCGTCATAGCGCTTG‑CGCCATTCgg                                               >  3:372549/1‑134 (MQ=255)                                                                                                                        ccac‑aGATGTGCGTCCACCACCAATCAGGCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGACCCTGCAATAGTGAAGCGTTACTGCTGGGCCACCTTCTCCGACTTGCCTTCATAGCGCTTG‑CGCCATTCGGCCAGAATCTGGTCACgg                              >  4:136893/1‑149 (MQ=255)                                                                                                                         cac‑cGATGTGCGTCCACCACCAATCCGGCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGACCCTGCAATAGTGAAGCGTTACTGCTGGGCCACCTTCTCCGACTTGCCGTCATAGCGCTTG‑CGCCATTCGGCCAGAAGCTGGTCACGGt                             >  8:129778/1‑149 (MQ=255)                                                                                                                         cac‑cGATGTGCGTCCACCACCAATCCGGCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGACCCTGCAATAGTGAAGCGTTACTGCTGGGCCACCTTCTCCGACTTGCCGTCATAGCGATTG‑CGCCATTCGGCCAGAATCTGGTCACGGt                             >  4:36159/1‑149 (MQ=255)                                                                                                                         cac‑cGATCTGCGTCCACCACCAATCCGGCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGACCCTGCAATAGTGAAGCGTTACTGCTGGGCCACCTTCTCCGACTTGCCGTCATAGCGCTTG‑CGCCATTCGGCCAGAATCTGGTCACGGt                             >  7:251776/1‑149 (MQ=255)                                                                                                                          ac‑cGATGTGCGTCCACCACCAATCCGGCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGACCTTGCAATAGTGGAGCGTTACTGCTGGGCCACCTTCTCCGACTTGCCGTCATAGCGCTTG‑CGCCATTCGGCCAGAATCTGGTCACGGtt                            >  2:305533/1‑149 (MQ=255)                                                                                                                          ac‑cGATGTGCGTCCACCACCAATCCGGCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGACCCTGCAATAGTGAAGCGTTACTGCTGGGCCACCTTCTCCGACTTGCCGTCATAGCGCTTG‑CGCCATTCGGCCTGAATCTGGTCACgggt                            >  8:303740/1‑147 (MQ=255)                                                                                                                              gATGTGCGTCCACCACCAATCCGGCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGACCCTGCAATAGTGAAGCGTTACTGCTGGGCCACCTTCTCCGACTTGCCGTCATAGCGCTTG‑CGCCATTCGGCCAGAATCTGGTCACGGttttt                         <  8:251776/149‑1 (MQ=255)                                                                                                                                     gTCCACCACCAATCCGGCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGACCCTGCAATAGTGAAGCGTTACTGCTGGGCCACCTTCTCCGACTTGCCGTCATAGCGCTTG‑CGCCATTCGGCCAGAATCTGGTCACGGTTTTTAGAAGcc                  >  2:74779/1‑149 (MQ=255)                                                                                                                                        caccaccaATCCGGCGTAGGAGCGGGTTTACCCGCGAAGAGgccggattggtggtggacgcacatcggtggttgtacaaaggccgcccgtaggagcgggtttacccgcgaagaggccaaccctgctggctcaaatctgtgaaaccagcg                <  2:213035‑M2/149‑109 (MQ=255)                                                                                                                                         accaccaATCCGGCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGACCCTGCAATAGTGAAGCGTTACTGCTGGGCCACCTTCTCCGACTTGCCGTCATAGCGCTTG‑CGCCATTCGGCCAGAATCTGGTCACGGTTTTTAGAAGCCCAGa              >  2:336371/1‑149 (MQ=255)                                                                                                                                           caccaATCCGGCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGACCCTGCAATAGTGAAGCGTTACTGCTGGGCCACCTTCTCCGACTTGCCGTCATAGCGCTTGCCGCCATTCGGCCAGAATCTGGTCACGGTTTTTAGAAGCCCAGAc             <  1:74779/149‑1 (MQ=255)                                                                                                                                           caccaATCCGGCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGACCCTGCAATAGTGAAGCGTTACTGCTGGGCCACCTTCTCCGACTTGCCGTCATAGCGCTTG‑CGCCATTCGGCCAGAATCTGGTCACGGTTTTTAGAAGCCCAGAc             >  1:294974/1‑148 (MQ=255)                                                                                                                                             ccaATCCGGCGTAGGAGCGGGTTTACCCGCGAAGAGgccggattggtggtggacgcacatcggtggttgtacaaaggccgcccgtaggagcgggtttacccgcgaagaggccaaccctgctggctcaaatctgtgaaaccagcgcctc            <  8:226796‑M2/148‑113 (MQ=255)                                                                                                                                             ccaATCCGGCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGACCCTGCAATAGTGAAGCGTTACTGCTGGGCCACCTTCTCCGACTTGCCGTCATAGCGCTTG‑CGCCATTCGGCCAGAATCTGGTCACGGTTTTTAGAAGCCCAGACaaa          <  6:86467/149‑1 (MQ=255)                                                                                                                                              caATCCGGCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGACCCTGCAATAGTGAAGCGTTACTGCTGGGCCACCTTCTCCGACTTGCCGTCATAGCGCTTG‑CGCCATTCGGCCAGAATCTGGTCACGGTTTTTAGAAGCCCAGACAAAg         >  4:47498/1‑149 (MQ=255)                                                                                                                                              caATCCGGCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGACCCTGCAATAGTGAAGCGTTACTGCTGGGCCACCTTCTCCGACTTGCCGTCATAGCGCTTG‑CGCCATTCGGCCAGAATCTGGTCACGGTTTTTAGAAGCCCAGACAAAg         <  7:87692/149‑1 (MQ=255)                                                                                                                                                aTCCGGCGTAGGAGCGGGTTTACCCGCGAAGAGgccggattggtggtggacgcacatcggtggttgtacaaaggccgcccgtaggagcgggtttacccgcgaagaggccaaccctgctggctcaaatctgtgacaccagcgcctccaac        <  6:67409‑M2/149‑117 (MQ=255)                                                                                                                                                aTCCGGCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGACCCTGCAATAGTGAAGCGTTACTGCTGGGCCACCTTCTCCGACTTGCCGTCATAGCGCTTG‑CGCCATTCGGCCAGAATCTGGTCACGGTTTTTAGAAGCCCAGACAAAGTc       >  1:264354/1‑149 (MQ=255)                                                                                                                                                aTCCGGCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGACCCTGCAATAGTGAAGCGTTACTGCTGGGCCACCTTCTCCGACTTGCCGTCATAGCGCTTG‑CGCCATTCGGCCAGAATCTGGTCACGGTTTTTAGAAGCCCAGACAAAGTc       >  8:31074/1‑149 (MQ=255)                                                                                                                                                 tCCGGCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGACCCTGCAATAGTGAAGCGTTACTGCTGGGCCACCTTCTCCGACTTGCCGTCATAGCGCTTG‑CGCTATTCGGCCAGAATCTGGTCACg                               <  7:348620/124‑1 (MQ=255)                                                                                                                                                 tCCGGCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGACCCTGCAATAGTGAAGCGTTACTGCTGGGCCACCTTCTCCGACTTGCCGTCATAGCGCTTG‑CGCTATTCGGCCAGAATCTGGTCACg                               >  8:348620/1‑124 (MQ=255)                                                                                                                                                    ggCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGACCCTGCAATAGTGAAGCGTTACTGCTGGGCCACCTTCTCCGACTTGCCGTCATAGCGCTTG‑CGCCATTCGGCCAGAATCTGGTCACGGTTTTTAGAAGCCCAGACAAAGTCGTTc   <  7:12486/149‑1 (MQ=255)                                                                                                                                                    ggCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGACCCTGCAATAGTGAAGCGTTACTGCTGGGCCACCTTCTCCGACTTGCCGTCATAGCGCTTG‑CGCCATTCGGCCAGAATCTGGTCACGGTTTTTAGAAGCCCAGACAAAGTCGTTc   >  1:261914/1‑149 (MQ=255)                                                                                                                                                     gCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGACCCTGCAATAGTGAAGCGTTACTGCTGGGCCACCTTCTCCGACTTGCCGTCATAGCGCTTG‑CGCCATTCGGCCAGAATCTGGTCACGGTTTTTAGAAGCCCAGACAAAGTCGTTCt  <  3:47498/149‑1 (MQ=255)                                                                                                                                                      |                                                                                                                                                     GGCCAAGCTGAATCAGGCTGAGCGGCAGGAGCAGTTGGAGGCGCTGGTTTCACAGATTTGAGCCAGCAGGGTTGGCCTCTTCGCGGGTAAACCCGCTCCTACGGGCGGCCTTTGTACAACCAC‑CGATGTGCGTCCACCACCAATCCGGCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGACCCTGCAATAGTGAAGCGTTACTGCTGGGCCACCTTCTCCGACTTGCCGTCATAGCGCTTG‑CGCCATTCGGCCAGAATCTGGTCACGGTTTTTAGAAGCCCAGACAAAGTCGTTCT  >  NC_002947/5858762‑5859057

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.