| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 5887364 = | 50 (0.810) | 3 (0.050) | 3/252 | NT | 6.9% | coding (220/570 nt) | PP_5162 | hypothetical protein |
| ? | NC_002947 | 5887424 = | 33 (0.560) | coding (280/570 nt) | PP_5162 | hypothetical protein | |||||
CTCGCTGCCGGGCAGGTGGGTGATGGGTTGCAAGCTGCCGATATTGGCCGGCAGCTGGCCGTGGCTGCCGGGTTTTTGCAGCACATGGAAGGTAACGTCGTGGCCAGCGAACTGGCTGATAAGGTCGCCCAGGTGCTGTTGGTTGCCGACGTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5887516‑5887364‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgacgttACCTTCCATGTGCTGCAAAAACCCGGCAGCCACGGCCAGCTGCCGGCCAATATCGGCAGCTTGCAACCCATCACCCACCTGCCCGGCAGCGAGCACCTGCCTGCGTCCCCGGCCGTGGCCATCTGGGACCGGCAAGGCCGCCTGGCT > NC_002947/5887424‑5887570 CTCGCTGCCGGGCAGGTGGGTGATGGGTTGCAAGCTGCCGATATTGGCCGGCAGCTGGCCGTGGCTGCCGGGTTTTTGCAGCACATGGAAGGTAACGTCGTGGCCAGCGAACTGGCTGATAAGGTCGCCAAGGTGCTGTTGGTTGCCGA > 6:376837/1‑149 TCGCTGCCGGGCAGGTGGGTGATGGGTTGCAAGCTGCCGATATTGGCCGGCAGCTGGCCGTGGCTGCCGGGTTTTTGCAGCACATGGAAGGTAACGTCGTGGCCAGCGAACTGGCTGATAAGGTCGCCCAGGTGCTGTTGGTTGCCGAC > 1:384118/1‑149 GCTGCCGGGCAGGTGGGTGATGGGTTGCAAGCTGCCGATATTGGCCGGCAGCTGGCCGTGGCTGCCGGGTTTTTGCAGCACATGGAAGGTAACGTCGTGGCCAGCGAACTGGCTGATAAGGTCGCCCAGGTGCTGTTGGTTGCCGAC < 7:361600/147‑1 TAACGTCGTGGCCAGCGAACTGGCTGATAAGGTAGCCCAGGTGCTGTTGGTTGCCGACGTTACCTTCCATGTGCTGCAAAAACCCGGCAGCCACGGCCAGCTGCCGGCCAATATCGGCAGCTTGCAACCCATCACCCACCTGCCCGG > 3:200941/1‑147 AACGTCGTGGCCAGCGAACTGGCTGATAAGGTCGCCCAGGTGCTGTTGGTTGCCGACGTTACCTTCCATGTGCTGCAAAAACCCGGCAGCCACGGCCAGCTGCCGGCCAATATCG < 1:39142/115‑1 AACGTCGTGGCCAGCGAACTGGCTGATAAGGTCGCCCAGGTGCTGTTGGTTGCCGACGTTACCTTCCATGTGCTGCAAAAACCCGGCAGCCACGGCCAGCTGCCGGCCAATATCG > 2:39142/1‑115 GTTACCTTCCATGTGCTGCAAAAACCCGGCAGCCACGGCCAGCTGCCGGCCAATATCGGCAGCTTGCAACCCATCACCCACCTGCCCGGCAGCGAGCACCTGCCTGCGTCCCCGGCCGTGGCCATCTGGGACCGGCAAGGCCGCCTGGC < 1:182638/149‑1 GTTACCTTCCATGTGCTGCAAAAACCCGGCAGCCACGGCCAGCTGCCGGCCAATATCGGCAGCTTGCAACCCATCACCCACCTGCCCGGCAGCGAGCACCTGCCTGCGTCCCCGGCCGTGGCCATCTGGGACCGGCAAGGCCGCCTGGC < 1:275437/149‑1 GTTACCTTCCATGTGCTGCAAAAACCCGGCAGCCACGGCCAGCTGCCGGCCAATATCGGCAGCTTGCAACCCATCACCCACCTGCCCGGCAGCGAGCACCTGCCTGCGTCCCCGGCCGTGGCCATCTGGGACCGGCAAGGCCGCCTGGC < 4:171162/149‑1 TACCTTCCATGTGCTGCAAAAACCCGGCAGCCACGGCCAGCTGCCGGCCAATATCGGCAGCTTGCAACCCATCACCCACCTGCCCGGCAGCGAGCACCTGCCTGCGTCCCCGGCCGTGGCCATCTGGGACCGGCAAGGCCGCCTGGag > 1:138619/1‑146 TACCTTCCATGTGCTGCAAAAACCCGGCAGCCACGGCCAGCTGCCGGCCAATATCGGCAGCTTGCAACCCATCACCCACCTGCCCGGCAGCGAGCACCTGCCTGCGTCCCCGGCCGTGGCCATCTGGGACCGGCAAGGCCGCCTG < 2:138619/145‑1 CTCGCTGCCGGGCAGGTGGGTGATGGGTTGCAAGCTGCCGATATTGGCCGGCAGCTGGCCGTGGCTGCCGGGTTTTTGCAGCACATGGAAGGTAACGTCGTGGCCAGCGAACTGGCTGATAAGGTCGCCCAGGTGCTGTTGGTTGCCGACGTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5887516‑5887364‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgacgttACCTTCCATGTGCTGCAAAAACCCGGCAGCCACGGCCAGCTGCCGGCCAATATCGGCAGCTTGCAACCCATCACCCACCTGCCCGGCAGCGAGCACCTGCCTGCGTCCCCGGCCGTGGCCATCTGGGACCGGCAAGGCCGCCTGGCT > NC_002947/5887424‑5887570 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |