New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5887364 =	50 (0.810)	3 (0.050)	3/252	NT	6.9%	coding (220/570 nt)	PP_5162	hypothetical protein
	?	NC_002947	5887424 =	33 (0.560)					coding (280/570 nt)	PP_5162	hypothetical protein

GCCTACAGCGCCTTTCAGGCTCGCTACCTGCGCCCGTTCGACAACCAGGCCACGCTATTCGACGGCAGCCAGTTACAGCTACCTGCCGAGCTGGCCGGTGCTGGCCCGATCCGCGTCGTGCATTTCTGGGACCCGGCCTGCCCATGCAACGTC‑GGCAACCAACAGCACCTGGGCGACCTTATCAGCCAGTTCGCTGGCCACGACGT‑TACCTTCCATGTGCTGCAAAAACCCGGCAGCCACGGCCAGCTGCCGGCCAATATCGGCAGCTTGCAACCCATCACCCACCTGCCCGG  >  NC_002947/5887217‑5887509                                                                                                                                                    |                                                                                                                                                    ctccaggcggccttgccggtcccagatggccacggccggggacgcaggcaggtgctcgctgccgggcaggtgggtgatgggttgcaagctgccgatattggccggcagctggccgtggctgccgggtttttgcagcacatggaaggta                                                                                                                                                     >  1:138619‑M1/148‑148 (MQ=255)  gccaggcggccttgccggtcccagatggccacggccggggacgcaggcaggtgctcgctgccgggcaggtgggtgatgggttgcaagctgccgatattggccggcagctggccgtggctgccgggtttttgcagcacatggaaggtAAc                                                                                                                                                   <  1:182638‑M1/3‑1 (MQ=255)  gccaggcggccttgccggtcccagatggccacggccggggacgcaggcaggtgctcgctgccgggcaggtgggtgatgggttgcaagctgccgatattggccggcagctggccgtggctgccgggtttttgcagcacatggaaggtAAc                                                                                                                                                   <  4:171162‑M1/3‑1 (MQ=255)  gccaggcggccttgccggtcccagatggccacggccggggacgcaggcaggtgctcgctgccgggcaggtgggtgatgggttgcaagctgccgatattggccggcagctggccgtggctgccgggtttttgcagcacatggaaggtAAc                                                                                                                                                   <  1:275437‑M1/3‑1 (MQ=255)    caggcggccttgccggtcccagatggccacggccggggacgcaggcaggtgctcgctgccgggcaggtgggtgatgggttgcaagctgccgatattggccggcagctggccgtggctgccgggtttttgcagcacatggaaggta                                                                                                                                                     <  2:138619‑M1/1‑1 (MQ=255)      cAGCGCCATTCAGGCTAGCTACCTGGGACCTTTCGACAACGACGCCACGCTATTCGACGGCAGCCAGTTACAGCTACCTGCCGAGCTGGACGGTGCTGGCCCGATCCGCGTCGTGCATTTCTGGGACCCGGCCTGCCCATGCAACGTC‑g                                                                                                                                              <  8:330180/149‑1 (MQ=255)            cTTTCAGGCTCGCTACCTGCGCCCGTTCGACAACCAGGCCACGCTATTCGACGGCAGCCAGTTACAGCTACCTGCCGAGCTGGCCGGTGCTGGCCCGATCCGCGTCGTGCATTTCTGGGACCCGGCCTGCCCATGCAACGTC‑GGcaacc                                                                                                                                        <  1:308642/149‑1 (MQ=255)                  ggCTCGCTACCTGCGCCCGTTCGACAACCAGGCCACGCTATTCGACGGCAGCCAGTTACAGCTACCTGCCGAGCTGGCCGGTGCTGGCCCGATCCGCGTCGTGCATTTCTGGGACCCGGCCTGCCCATGCAACGTC‑GGCAACCAACAg                                                                                                                                   >  3:358532/1‑148 (MQ=255)                       gCTACCTGCGCCCGTTCGACAACCAGGCCACGCTATTCGACGGCAGCCAGTTACAGCTACCTGCCGAGCTGGCCGGTGCTGGCCCGATCCGCGTCGTGCATTTCTGGGACCCGGCCTGCCCATGCAACGTC‑GGca                                                                                                                                           >  5:45446/1‑135 (MQ=255)                       gCTACCTGCGCCCGTTCGACAACCAGGCCACGCTATTCGACGGCAGCCAGTTACAGCTACCTGCCGAGCTGGCCGGTGCTGGCCCGATCCGCGTCGTGCATTTCTGGGACCCGGCCTGCCCATGCAACGTC‑GGca                                                                                                                                           <  6:45446/135‑1 (MQ=255)                        cTACCTGCGCCCGTTCGACAACCAGGCCACGCTATTCGACGGCAGCCAGTTACAGCTACCTGCCGAGCTGGCCGGTGCTGGCCCGATCCGCGTCGTGCATTTCTGGGACCCGGCCTGCCCATGCAACGTC‑GGCAACCAACAGCACCTgg                                                                                                                            <  2:371958/149‑1 (MQ=255)                         tACCTGCGCCCGTTCGACAACCAGGCCACGCTATTCGACGGCAGCCAGTTACAGCTACCTGCCGAGCTGGCCGGTGCTGGCCCGATCCGCGTCGTGCATTTCTGGGACCCGGCCTGCCCATGCAACGTC‑GGCAACCAACAGCACCTggg                                                                                                                           >  2:228438/1‑149 (MQ=255)                           ccTGCGCCCGTTCGACAACCAGGCCACGCTATTCGACGGCAGCCAGTTACAGCTACCTGCCGAGCTGGCCGGTGCTGGCCCGATCCGCGTCGTGCATTTCTGGGACCCGGCCTGCCCATGCAACGTC‑GGCAACCAACAGCACCTGGGCg                                                                                                                         >  1:345468/1‑149 (MQ=255)                            cTGCGCCCGTTCGACAACCAGGCCACGCTATTCGACGACAGCCAGTTACAGCTACCTGCCGAGCTGGCCGGTGCTGGCCCGATCCGCGTCGTGCATTTCTGGGACCCGGCCTGCCCATGCAACGTC‑GGCAACCAACAGCACCTGGGCGa                                                                                                                        <  2:374802/149‑1 (MQ=255)                                 cccGTTCGACAACCAGGCCACGCTATTCGCCGGCAGCCAGTTACAGCTACCTGCCGAGCTGGCCGGTGCTGGCCCGATCCGCGTCGTGCATTTCTGGGACCCGGCCTGCCCATGCAACGTC‑GGCAACCAACAGCACCTGGGCGACCTTa                                                                                                                   >  8:220299/1‑149 (MQ=255)                                 cccGTTCGACAACCAGGCCACGCTATTCGACGGCAGCCAGTTACAGCTACCTGCCGAGCTGGCCGGTGCTGGCCCGATCCGCGTCGTGCATTTCTGGGACCCGGCCTGCCCATGCAACGTC‑GGCAACCAACAGCACCTGGGCGACCTTa                                                                                                                   >  1:9784/1‑149 (MQ=255)                                 cccGGTCGACAACCAGGCCACGCTATTCGACGGCAGCCAGTTACAGCTACCTGCCGAGCTGGCCGGTGCTGGCCCGATCCGCGTCGTGCATTTCTGGGACCCGGCCTGCCCATGCAACGTC‑GGCAACCAACAGCACCTGGGCGACCTTa                                                                                                                   >  7:206282/1‑149 (MQ=255)                                    gTTCGACAACCAGGCCACGCTATTCGACGGCAGCCAGTTACAGCTACCTGCCGAGCTGGCCGGTGCTGGCCCGATCCGCGTCGTGCATTTCTGGGACCCGGCCTGCCCATGCAACGTC‑GGCAACCAACAGCACCTGGGCGACCTTATCa                                                                                                                <  6:191272/149‑1 (MQ=255)                                        gACAACCAGGCCACGCTATTCGACGGCAGCCAGTTACAGCTACCTGCCGAGCTGGCCGGTGCTGGCCCGATCCGCGTCGTGCATTTCTGGGACCCGGCCTGCCCATGCACCGTC‑CGCACCCAACAGCACCTGGGCGCCCTTATCAGc                                                                                                              >  7:262794/1‑147 (MQ=255)                                           aaCCAGGCCACGCTATTCGACGGCAGCCAGTTACAGCTACCTGCCGAGCTGGCCGGTGCTGGCCCGATCCGCGTCGTGCATTTCTGGGACCCGGCCTGCCCATGCAACGTC‑GGCAACCAACAGCACCTGGGCGACCTTATCAGCCAGtt                                                                                                         >  5:376837/1‑149 (MQ=255)                                           aaCCAGCCCACGCTATTCGACGGCAGCCAGTTACAGCTACCTGCCGAGCTGGCCGGTGCTGGCCCGATCCGCGTCGTGCATTTCTGGGACCCGGCCTGCCCATGCAACGTC‑GGCAACCAACAGCACCTGGGCGACCTTATCAGCCAGtt                                                                                                         <  8:304443/149‑1 (MQ=255)                                            aCCAGGCCACGCTATTCTTCGGCAGCCAGTTACAGCTACCTGCCGAGCTGGCCGGTGCTGGCCCGATACGCTTCGTTAATTTCTGGGAGCAGGCCTGCCTATGCAACTTC‑GGCAAGCAACAGCACCTGGGCGACCTTATCAGCCAGTTc                                                                                                        <  6:276184/149‑1 (MQ=255)                                            aCCAGGCCACGCTATTCGACGGCAGCCAGTTACAGCTACCTGCCGAGCTGGCCGGTGCTGGCCCGATCCGCGTCGTGCATTTCTGGGACCCGGCCTGCCCATGCAACGTC‑GGCAACCAACAGCACCTGGGCGACCTTATCAGCCAGTTc                                                                                                        >  3:15544/1‑149 (MQ=255)                                                ggCCATGCTATTCGACGGCAGCCAGTTACAGCTACCTGCCGAGCTGGCCGGTGCTGGCCCGATCCGCGTCGTGCATTTCTGGGACCCGGCCTGCCCATGCAACGTC‑GGCAACCAACAGCACCTGGGCGACCTTATCAGCCAGTTCGCTg                                                                                                    <  5:186618/149‑1 (MQ=255)                                                ggCCACGCTATTCGACGGCAGCCAGTTACAGCTACCTGCCGAGCTGGCCGGTGCTGGCCCGATCCGCGTCGTGCATTTCTGGGACCCGGCCTGCCCATGCAACGTC‑GGCAACCAACAGCACCTGGGCGACCTTATCAGCCAGTTCGCTg                                                                                                    >  2:238408/1‑149 (MQ=255)                                                ggCCACGCTATTCGACGGCAGCCAGTTACAGCTACCTGCCGAGCTGGCCGGTGCTGGCCCGATCCGCGTCGTGCATTTCTGGGACCCGGCCTGCCCATGCAACGTC‑GGCAACCAACAGCACCTGGGCGACCTTATCAGCCAGTTCGCTg                                                                                                    <  6:219376/149‑1 (MQ=255)                                                  ccACGCTATTCGACGGCAGCCAGTTACATCTACCTGCCGAGCTGGCCGGTGCTGGAACGATCCGCGTCGTGCATTTCTGGGACCCGGCCTGTCCATGCAACGTC‑GGCAACCAACAGCACCTGGGCGACCTTATCAGCCAGTTCGCTGGc                                                                                                  <  3:26611/149‑1 (MQ=255)                                                   cACGCTATTCGACGGCAGCCAGTTACAGCTACCTGCCGAGCTGGCCGGTGCTGGCCCGATCCGCGTCGTGCATTTCTGGGACCCGGCCTGCCCATGCAACGTC‑GGCAACCAACAGCACCTGGGCGACCTTATCAGCCAGTTCGCTGGcc                                                                                                 >  3:375024/1‑149 (MQ=255)                                                             gACGGCAGCCAGTTACAGCTACCTGCCGAGCTGGCCGGTGCTGGCCCGATCCGCGTCGTGCATTTCTGGGACCCGGCCTGCCCATGCAACGTC‑GGCAACCAACAGCACCTGGGCGACCTTATCAGCCAGTTCGCTGGCCACGACGT‑TAc                                                                                      <  5:188152/149‑1 (MQ=255)                                                             gACGGCAGCCAGTTACAGCTACCTGCCGAGCTGGCCGGTGCTGGCCCGATCCGCGTCGTGCATTTCTGGGACCCGGCCTGCCCATGCAACGTC‑GGCAACCAACAGCACCTGGGCGACCTTATCAGCCAGTTCGCTGGCCACGACGT‑TAc                                                                                      >  2:384118/1‑149 (MQ=255)                                                             caCGGCAGCCAGTTACAGCTACCTGCCGAGCTGGCCGGTGCTGGCCCGATCCGCGTCGTGCATTTCTGGGACCCGGCCTGCCCATGCAACGTC‑GGCAACCAACAGCACCTGGGCGACCTTATCAGCCAGTTCGCTGGCCACGACGT‑Ta                                                                                       <  8:329724/147‑1 (MQ=255)                                                              ccgggcaggtgggtgatgggttgcaagctgccgatattggccggcagctggccgtggctgccgggtttttgcagcacatggaaggtAACGTC‑GGCAACCAACAGCACCTGGGCTACCTTATCAGCCAGTTCGCTGGCCACGACGT‑Ta                                                                                       >  3:200941‑M1/87‑147 (MQ=255)                                                                    gCCAGTTACAGCTACCTGCCGAGCTGGCCGGTGCTGGCCCGATCCGCGTCGTGCATTTCTGGGACCCGGCCTGCCCATGCAACGTC‑GGCAACCAACAGCACCTGGGCGACCTTATCAGCCAGTTCGCTGGCCACGACGT‑TACCTTCCAt                                                                               <  8:57294/149‑1 (MQ=255)                                                                      cAGTTACAGCTACCTGCCGAGCTGGCCGGTGCTGGCCCGATCCGCGTCGTGCATTTCTGGGACCCGGCCTGCCCATGCAACGTC‑GGCAACCAACAGCACCTGGGCGACCTTATCAGCCAGTTCGCTGGCCACGACGT‑TACCTTCCAtgt                                                                             <  4:358532/149‑1 (MQ=255)                                                                           aCAGCTACCTGCCGAGCTGGCCGGTGCTGGCCCGATCCGCGTCGTGCATTTCTGGGACCCGGCCTGCCCATGCAACGTC‑GGCAACCAACAGCACCTGGGCGACCTTATCAGCCAGTTCGCTGGCCACGACGT‑TACCTTCCATGtgctg                                                                         >  6:186953/1‑148 (MQ=255)                                                                            cAGCTACCTGCCGAGCTGGCCGGTGCTGGCCCGATCCGCGTCGTGCATTTCTGGGACCCGGCCTGCCCATGCAACGTC‑GGCAACCAACAGCACCTGGGCGACATTATCAGCCTGTTCGCTGGCCACGACGT‑TACCTTCCATGtgctgc                                                                        <  2:345468/148‑1 (MQ=255)                                                                             aGCTACCTGCCGAGCTGGCCGGTGCTGGCCCGATCCGCGTCGTGCATTTCTGGGACCCGGCCTGCCCATGCAACGTC‑GGCAACCAACAGCACCTGGGCGACCTTATCAGCCAGTTCGCTGGCCACGACGT‑TACCTTCCATGTGCTGCaa                                                                      <  2:9784/149‑1 (MQ=255)                                                                              gCTACCTGCCGAGCTGGCCGGTGCTGGCCCGATCCGCGTCGTGCATTTCTGGGACCCGGCCTGCCCATGCAACGTC‑GGCAACCAACAGCACCTGGGCGACCTTATCAGCCAGTTCGCTGGCCACGACGT‑TACCTTCCATGTGCTGCaaa                                                                     <  4:15544/149‑1 (MQ=255)                                                                                   cTGCCGAGCTGGCCGGTGCTGGCCCGATCCGCGTCGTGCATTTCTGGGACCCGGCCTGCCCATGCAACGTC‑GGCAACCAACAGCACCTGGGCGACCTTATCAGCCAGTTCGCTGGCCACGACGT‑TACCTTCCATGTGCTGCAAAAAccc                                                                <  4:375024/149‑1 (MQ=255)                                                                                      ccGAGCTGGCCGGTGCTGGCCCGATCCGCGTCGTGCATTTCTGGGACCCGGCCTGCCCATGCAACGTC‑GGCAACCAACAGCACCTGGGCGACCTTATCAGCCAGTTCGCTGGCCACGACGT‑TACCTTCCATGTGCTGCAAAAACCCg                                                               <  5:186953/147‑1 (MQ=255)                                                                                      ccGAGCTGGCCGGTGCTGGCCCGAGCCGCGTCGTGCATTTCTGGGACCCGGCCTGCCCATGCAACGTC‑GGCAACCAACAGCACCTGGGCGACCTTATCAGCCAGTTCGCTGGCCACGACGT‑TACCTTCCATGTGCTGCAAAAACCCg                                                               <  4:211985/147‑1 (MQ=255)                                                                                          gCTGGCCGGTGCTGGCCCGATCCGCGTCGTGCATTTCTGGGACCCGGCCTGCCCATGCAACGTC‑GGCAACCAACAGCACCTGGGCGACCTTATCAGCCAGTTCGCTGGCCACGACGTCTACCTTCCATGTGCTGCAAAAACCCGGCAGc                                                          <  1:238408/149‑1 (MQ=255)                                                                                             cgatattggccggcagctggccgtggctgccgggtttttgcagcacatggaaggtAACGTC‑GGCAACCAACAGCACCTGGGCGACCTTATCAGCCAGTTCGCTGGCCACGACGt‑t                                                                                        >  2:39142‑M1/56‑115 (MQ=255)                                                                                             cgatattggccggcagctggccgtggctgccgggtttttgcagcacatggaaggtAACGTC‑GGCAACCAACAGCACCTGGGCGACCTTATCAGCCAGTTCGCTGGCCACGACGt‑t                                                                                        <  1:39142‑M1/60‑1 (MQ=255)                                                                                                        gCCCGATCCGCGTCGTGCATTTCTGGGACCCGGCCTGCCCATGCAACGTC‑GGCAACCAACAGCACCTGGGCGACCTTATCAGCCAGTTCGCTGGCCACGACGT‑TACCTTCCATGTGCTGCAAAAACCCGGCAGCCACGGCCAGCTGCCg                                           >  8:294615/1‑149 (MQ=255)                                                                                                         cccGATCCGCGTCGTGCATTTCTGGGACCCGGCCTGCCCATGCAACGTC‑GGCAACCAACAGCACCTGGGCGACCTTATCAGCCAGTTCGCTGGCCACGACGT‑TACCTTCCATGtgctg                                                                         <  5:100609/118‑1 (MQ=255)                                                                                                         cccGATCCGCGTCGTGCATTTCTGGGACCCGGCCTGCCCATGCAACGTC‑GGCAACCAACAGCACCTGGGCGACCTTATCAGCCAGTTCGCTGGCCACGACGT‑TACCTTCCATGtgctg                                                                         >  6:100609/1‑118 (MQ=255)                                                                                                                    tcgtGCATTTCTGGGACCCGGCCTGCCCATGCAACGTC‑GGCAACCAACAGCACCTGGGCGACCTTATCAGCCAGTTCGCTGGCCACGACGT‑TACCTTCCATGTGCTGCAAAAACCCGGCAGCCACGGCCAGCTGCCGGCCAATATCGGc                               <  7:294615/149‑1 (MQ=255)                                                                                                                       tGCATTTCTGGGACCCGGCCTGCCCATGCAACGTCGGGCAACCAACAGCACCTGGGCGACCTTATCAGCCAGTTCGCTGGCCACGACGT‑TACCTTCCATGTGCTGCAAAAACCCGGCAGCCACGGCCAGCTGCCGGCCAATATCGGCAg                             >  1:264960/1‑149 (MQ=255)                                                                                                                       tGCATTTCTGGGACCCGGCCTGCCCATGCAACGTC‑TGCAACCAACAGCACCTGGGCGACCTTATCAGCCAGTTCGCTGGCCACGACGT‑TACCTTCCATGTGCTGCAAAAACCCGGCAGCCACGGCCAGCTGCCGGCCAATATCGGCAGc                            <  8:7824/149‑1 (MQ=255)                                                                                                                         cATTTCTGGGACCCGGCCTGCCCATGCAACGTC‑GGCAACCAACAGCACCTGGGCGACCTTATCAGCCAGTTCGCTGGCCACGACGT‑TACCTTCCATGTGCTGCAAAAACCCGGCAGCCACGGCCAGCTGCCGGCCAATATCGGCAGCtt                          <  3:141604/149‑1 (MQ=255)                                                                                                                         cATTTCTGGGACCCGGCCTGCCCATGCAACGTC‑GGCAACCAACAGCACCTGGGCGACCTTATCAGCCAGTTCGCTGGCCACGACGT‑TACCTTCCATGTGCTGCAAAAACCCGGCAGCCACGGCCAGCTGCCGGCCAATATCGGCAGCtt                          >  3:171162/1‑149 (MQ=255)                                                                                                                              cTGGGACCCGGCCTGCCCATGCAACGTC‑GGCAACCAACAGCACCTGGGCGACCTTATCAGCCAGTTCGCTGGCCACGACGT‑TACCTTCCATGTGCTGCAAAAACCCGGCAGCCACGGCCAGCTGCCGGCCAATATCGGCAGCTTGCaa                      <  7:220299/148‑1 (MQ=255)                                                                                                                               tGGGACCCGGCCTGCCCATGCAACGTC‑GGCAACCAACAGCACCTGGGCGACCTTATCAGCCAGTTCGCTGGCCACGACGT‑TACCTTCCATGTGCTGCAAAAACCCGGCAGCCACGGCCAGCTGCCGGCCAATATCGGCAGCTTGCAAcc                    >  1:243819/1‑149 (MQ=255)                                                                                                                               tGGGACCCGGCCTGCCCATGCAACGTC‑GGCAACCAACAGCACCTGGGCGACCTTATCAGCCAGTTCGCTGGCCACGACGT‑TACCTTCCATGTGCTGCAAAAACCCGGCAGCCACGGCCAGCTGCCGGCCAATATCGGCAGCTTGCAAcc                    >  4:89456/1‑149 (MQ=255)                                                                                                                                    cccTGCCTGCCCATGCAACGTC‑GGCAACCAACAGCACCTGGGCGACCTTATCAGCCAGTTCGCTGGCCACGACGT‑TACCTTCCATGTGCTGCAAAAACCCGGCAGCCACGGCCAGCTGCCGGCCAATATCGGCAGCTTGCAACCCATca               <  1:228438/149‑1 (MQ=255)                                                                                                                                         ccTGCCCATGCAACGTC‑GGCAACCAACAGCACCTGGGCGACCTTATCAGCCAGTTCGCTGGCCACGACGT‑TACCTTCCATGTGCTGCAAAAACCCGGCAGCCACGGCCAGCTGCCGGCCAATATCgg                                <  2:46647/127‑1 (MQ=255)                                                                                                                                            gCCCATGCAACGTC‑GGCAACCAACAGCACCTGGGCGACCTTATCAGCCAGTTCGCTGGCCACGACGT‑TACCTTCCATGTGCTGCAAAAACCCGGCAGCCACGGCCAGCTGCCGGCCAATATCGGCAGCTTGCAACCCATCACCCACCTg       >  8:222142/1‑149 (MQ=255)                                                                                                                                                   cAACGTC‑GGCAACCAACAGCACCTGGGCGACCTTATCAGCCAGTTCGCTGGCCACGACGT‑TACCTTCCATGTGCTGCAAAAACCCGGCAGCCACGGCCAGCTGCCGGCCAATATCGGCAGCTTGCAACCCATCACCCACCTGCCCgg  >  1:313420/1‑147 (MQ=255)                                                                                                                                                    |                                                                                                                                                    GCCTACAGCGCCTTTCAGGCTCGCTACCTGCGCCCGTTCGACAACCAGGCCACGCTATTCGACGGCAGCCAGTTACAGCTACCTGCCGAGCTGGCCGGTGCTGGCCCGATCCGCGTCGTGCATTTCTGGGACCCGGCCTGCCCATGCAACGTC‑GGCAACCAACAGCACCTGGGCGACCTTATCAGCCAGTTCGCTGGCCACGACGT‑TACCTTCCATGTGCTGCAAAAACCCGGCAGCCACGGCCAGCTGCCGGCCAATATCGGCAGCTTGCAACCCATCACCCACCTGCCCGG  >  NC_002947/5887217‑5887509

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.