New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5887364 =	50 (0.810)	3 (0.050)	3/252	NT	6.9%	coding (220/570 nt)	PP_5162	hypothetical protein
	?	NC_002947	5887424 =	33 (0.560)					coding (280/570 nt)	PP_5162	hypothetical protein

GACGGCAGCCAGTTACAGCTACCTGCCGAGCTGGCCGGTGCTGGCCCGATCCGCGTCGTGCATTTCTGGGACCCGGCCTGCCCATGCAACGTC‑GGCAACCAACAGCACCTGGGCGACCTTATCAGCCAGTTCGCTGGCCACGACGT‑TACCTTCCATGTGCTGCAAAAACCCGGCAGCCACGGCCAGCTGCCGGCCAATATCGGCAGCTTGCAACCCATCACCCACCTGCCCGGCAGCGAGCACCTGCCTGCGTCCCCGGCCGTGGCCATCTGGGACCGGCAAGGCCGCCTGGCT  >  NC_002947/5887277‑5887570                                                                                                                                                      |                                                                                                                                                   gACGGCAGCCAGTTACAGCTACCTGCCGAGCTGGCCGGTGCTGGCCCGATCCGCGTCGTGCATTTCTGGGACCCGGCCTGCCCATGCAACGTC‑GGCAACCAACAGCACCTGGGCGACCTTATCAGCCAGTTCGCTGGCCACGACGT‑TAc                                                                                                                                                   <  5:188152/149‑1 (MQ=255) gACGGCAGCCAGTTACAGCTACCTGCCGAGCTGGCCGGTGCTGGCCCGATCCGCGTCGTGCATTTCTGGGACCCGGCCTGCCCATGCAACGTC‑GGCAACCAACAGCACCTGGGCGACCTTATCAGCCAGTTCGCTGGCCACGACGT‑TAc                                                                                                                                                   >  2:384118/1‑149 (MQ=255) caCGGCAGCCAGTTACAGCTACCTGCCGAGCTGGCCGGTGCTGGCCCGATCCGCGTCGTGCATTTCTGGGACCCGGCCTGCCCATGCAACGTC‑GGCAACCAACAGCACCTGGGCGACCTTATCAGCCAGTTCGCTGGCCACGACGT‑Ta                                                                                                                                                    <  8:329724/147‑1 (MQ=255)  ccgggcaggtgggtgatgggttgcaagctgccgatattggccggcagctggccgtggctgccgggtttttgcagcacatggaaggtAACGTC‑GGCAACCAACAGCACCTGGGCTACCTTATCAGCCAGTTCGCTGGCCACGACGT‑Ta                                                                                                                                                    >  3:200941‑M1/87‑147 (MQ=255)        gCCAGTTACAGCTACCTGCCGAGCTGGCCGGTGCTGGCCCGATCCGCGTCGTGCATTTCTGGGACCCGGCCTGCCCATGCAACGTC‑GGCAACCAACAGCACCTGGGCGACCTTATCAGCCAGTTCGCTGGCCACGACGT‑TACCTTCCAt                                                                                                                                            <  8:57294/149‑1 (MQ=255)          cAGTTACAGCTACCTGCCGAGCTGGCCGGTGCTGGCCCGATCCGCGTCGTGCATTTCTGGGACCCGGCCTGCCCATGCAACGTC‑GGCAACCAACAGCACCTGGGCGACCTTATCAGCCAGTTCGCTGGCCACGACGT‑TACCTTCCAtgt                                                                                                                                          <  4:358532/149‑1 (MQ=255)               aCAGCTACCTGCCGAGCTGGCCGGTGCTGGCCCGATCCGCGTCGTGCATTTCTGGGACCCGGCCTGCCCATGCAACGTC‑GGCAACCAACAGCACCTGGGCGACCTTATCAGCCAGTTCGCTGGCCACGACGT‑TACCTTCCATGtgctg                                                                                                                                      >  6:186953/1‑148 (MQ=255)                cAGCTACCTGCCGAGCTGGCCGGTGCTGGCCCGATCCGCGTCGTGCATTTCTGGGACCCGGCCTGCCCATGCAACGTC‑GGCAACCAACAGCACCTGGGCGACATTATCAGCCTGTTCGCTGGCCACGACGT‑TACCTTCCATGtgctgc                                                                                                                                     <  2:345468/148‑1 (MQ=255)                 aGCTACCTGCCGAGCTGGCCGGTGCTGGCCCGATCCGCGTCGTGCATTTCTGGGACCCGGCCTGCCCATGCAACGTC‑GGCAACCAACAGCACCTGGGCGACCTTATCAGCCAGTTCGCTGGCCACGACGT‑TACCTTCCATGTGCTGCaa                                                                                                                                   <  2:9784/149‑1 (MQ=255)                  gCTACCTGCCGAGCTGGCCGGTGCTGGCCCGATCCGCGTCGTGCATTTCTGGGACCCGGCCTGCCCATGCAACGTC‑GGCAACCAACAGCACCTGGGCGACCTTATCAGCCAGTTCGCTGGCCACGACGT‑TACCTTCCATGTGCTGCaaa                                                                                                                                  <  4:15544/149‑1 (MQ=255)                       cTGCCGAGCTGGCCGGTGCTGGCCCGATCCGCGTCGTGCATTTCTGGGACCCGGCCTGCCCATGCAACGTC‑GGCAACCAACAGCACCTGGGCGACCTTATCAGCCAGTTCGCTGGCCACGACGT‑TACCTTCCATGTGCTGCAAAAAccc                                                                                                                             <  4:375024/149‑1 (MQ=255)                          ccGAGCTGGCCGGTGCTGGCCCGATCCGCGTCGTGCATTTCTGGGACCCGGCCTGCCCATGCAACGTC‑GGCAACCAACAGCACCTGGGCGACCTTATCAGCCAGTTCGCTGGCCACGACGT‑TACCTTCCATGTGCTGCAAAAACCCg                                                                                                                            <  5:186953/147‑1 (MQ=255)                          ccGAGCTGGCCGGTGCTGGCCCGAGCCGCGTCGTGCATTTCTGGGACCCGGCCTGCCCATGCAACGTC‑GGCAACCAACAGCACCTGGGCGACCTTATCAGCCAGTTCGCTGGCCACGACGT‑TACCTTCCATGTGCTGCAAAAACCCg                                                                                                                            <  4:211985/147‑1 (MQ=255)                              gCTGGCCGGTGCTGGCCCGATCCGCGTCGTGCATTTCTGGGACCCGGCCTGCCCATGCAACGTC‑GGCAACCAACAGCACCTGGGCGACCTTATCAGCCAGTTCGCTGGCCACGACGTCTACCTTCCATGTGCTGCAAAAACCCGGCAGc                                                                                                                       <  1:238408/149‑1 (MQ=255)                                            gCCCGATCCGCGTCGTGCATTTCTGGGACCCGGCCTGCCCATGCAACGTC‑GGCAACCAACAGCACCTGGGCGACCTTATCAGCCAGTTCGCTGGCCACGACGT‑TACCTTCCATGTGCTGCAAAAACCCGGCAGCCACGGCCAGCTGCCg                                                                                                        >  8:294615/1‑149 (MQ=255)                                             cccGATCCGCGTCGTGCATTTCTGGGACCCGGCCTGCCCATGCAACGTC‑GGCAACCAACAGCACCTGGGCGACCTTATCAGCCAGTTCGCTGGCCACGACGT‑TACCTTCCATGtgctg                                                                                                                                      <  5:100609/118‑1 (MQ=255)                                             cccGATCCGCGTCGTGCATTTCTGGGACCCGGCCTGCCCATGCAACGTC‑GGCAACCAACAGCACCTGGGCGACCTTATCAGCCAGTTCGCTGGCCACGACGT‑TACCTTCCATGtgctg                                                                                                                                      >  6:100609/1‑118 (MQ=255)                                                        tcgtGCATTTCTGGGACCCGGCCTGCCCATGCAACGTC‑GGCAACCAACAGCACCTGGGCGACCTTATCAGCCAGTTCGCTGGCCACGACGT‑TACCTTCCATGTGCTGCAAAAACCCGGCAGCCACGGCCAGCTGCCGGCCAATATCGGc                                                                                            <  7:294615/149‑1 (MQ=255)                                                           tGCATTTCTGGGACCCGGCCTGCCCATGCAACGTCGGGCAACCAACAGCACCTGGGCGACCTTATCAGCCAGTTCGCTGGCCACGACGT‑TACCTTCCATGTGCTGCAAAAACCCGGCAGCCACGGCCAGCTGCCGGCCAATATCGGCAg                                                                                          >  1:264960/1‑149 (MQ=255)                                                           tGCATTTCTGGGACCCGGCCTGCCCATGCAACGTC‑TGCAACCAACAGCACCTGGGCGACCTTATCAGCCAGTTCGCTGGCCACGACGT‑TACCTTCCATGTGCTGCAAAAACCCGGCAGCCACGGCCAGCTGCCGGCCAATATCGGCAGc                                                                                         <  8:7824/149‑1 (MQ=255)                                                             cATTTCTGGGACCCGGCCTGCCCATGCAACGTC‑GGCAACCAACAGCACCTGGGCGACCTTATCAGCCAGTTCGCTGGCCACGACGT‑TACCTTCCATGTGCTGCAAAAACCCGGCAGCCACGGCCAGCTGCCGGCCAATATCGGCAGCtt                                                                                       <  3:141604/149‑1 (MQ=255)                                                             cATTTCTGGGACCCGGCCTGCCCATGCAACGTC‑GGCAACCAACAGCACCTGGGCGACCTTATCAGCCAGTTCGCTGGCCACGACGT‑TACCTTCCATGTGCTGCAAAAACCCGGCAGCCACGGCCAGCTGCCGGCCAATATCGGCAGCtt                                                                                       >  3:171162/1‑149 (MQ=255)                                                                  cTGGGACCCGGCCTGCCCATGCAACGTC‑GGCAACCAACAGCACCTGGGCGACCTTATCAGCCAGTTCGCTGGCCACGACGT‑TACCTTCCATGTGCTGCAAAAACCCGGCAGCCACGGCCAGCTGCCGGCCAATATCGGCAGCTTGCaa                                                                                   <  7:220299/148‑1 (MQ=255)                                                                   tGGGACCCGGCCTGCCCATGCAACGTC‑GGCAACCAACAGCACCTGGGCGACCTTATCAGCCAGTTCGCTGGCCACGACGT‑TACCTTCCATGTGCTGCAAAAACCCGGCAGCCACGGCCAGCTGCCGGCCAATATCGGCAGCTTGCAAcc                                                                                 >  4:89456/1‑149 (MQ=255)                                                                   tGGGACCCGGCCTGCCCATGCAACGTC‑GGCAACCAACAGCACCTGGGCGACCTTATCAGCCAGTTCGCTGGCCACGACGT‑TACCTTCCATGTGCTGCAAAAACCCGGCAGCCACGGCCAGCTGCCGGCCAATATCGGCAGCTTGCAAcc                                                                                 >  1:243819/1‑149 (MQ=255)                                                                        cccTGCCTGCCCATGCAACGTC‑GGCAACCAACAGCACCTGGGCGACCTTATCAGCCAGTTCGCTGGCCACGACGT‑TACCTTCCATGTGCTGCAAAAACCCGGCAGCCACGGCCAGCTGCCGGCCAATATCGGCAGCTTGCAACCCATca                                                                            <  1:228438/149‑1 (MQ=255)                                                                             ccTGCCCATGCAACGTC‑GGCAACCAACAGCACCTGGGCGACCTTATCAGCCAGTTCGCTGGCCACGACGT‑TACCTTCCATGTGCTGCAAAAACCCGGCAGCCACGGCCAGCTGCCGGCCAATATCgg                                                                                             <  2:46647/127‑1 (MQ=255)                                                                                gCCCATGCAACGTC‑GGCAACCAACAGCACCTGGGCGACCTTATCAGCCAGTTCGCTGGCCACGACGT‑TACCTTCCATGTGCTGCAAAAACCCGGCAGCCACGGCCAGCTGCCGGCCAATATCGGCAGCTTGCAACCCATCACCCACCTg                                                                    >  8:222142/1‑149 (MQ=255)                                                                                       cAACGTC‑GGCAACCAACAGCACCTGGGCGACCTTATCAGCCAGTTCGCTGGCCACGACGT‑TACCTTCCATGTGCTGCAAAAACCCGGCAGCCACGGCCAGCTGCCGGCCAATATCGGCAGCTTGCAACCCATCACCCACCTGCCCgg                                                               >  1:313420/1‑147 (MQ=255)                                                                                         taacgtcgtggccagcgaactggctgataaggtagcccaggtgctgttggttgccgacgttACCTTCCATGTGCTGCAAAAACCCGGCAGCCACGGCCAGCTGCCGGCCAATATCGGCAGCTTGCAACCCATCACCCACCTGCCCgg                                                               >  3:200941‑M2/62‑147 (MQ=255)                                                                                          aacgtcgtggccagcgaactggctgataaggtcgcccaggtgctgttggttgccgacgttACCTTCCATGTGCTGCAAAAACCCGGCAGCCACGGCCAGCTGCCGGCCAATATCg                                                                                              >  2:39142‑M2/61‑115 (MQ=255)                                                                                          aacgtcgtggccagcgaactggctgataaggtcgcccaggtgctgttggttgccgacgttACCTTCCATGTGCTGCAAAAACCCGGCAGCCACGGCCAGCTGCCGGCCAATATCg                                                                                              <  1:39142‑M2/55‑1 (MQ=255)                                                                                           GTC‑GGCAACCAACAGCACCTGGGCGACCTTATCAGCCAGTTCGCTGGCCACGACGT‑TACCTTCCATGTGCTGCAAAAACCCGGCAGCCACGGCCAGCTGCCGGCCAATATCGGCAGCTTGCAACCCATCACCCACCTGCCCGGCAGc                                                           <  7:361600‑M1/147‑1 (MQ=255)                                                                                           GTC‑GGCAACCAACAGCACCTGGGCGACCTTATCAGCCAGTTCGCTGGCCACGACGT‑TACCTTCCATGTGCTGCAAAAACCCGGCAGCCACGGCCAGCTGCCGGCCAATATCGGCAGCTTGCAACCCATCACCCACCTGCCCGGCAGCGa                                                         >  1:384118‑M1/1‑149 (MQ=255)                                                                                            TC‑GGCAACCAACAGCACCTTGGCGACCTTATCAGCCAGTTCGCTGGCCACGACGT‑TACCTTCCATGTGCTGCAAAAACCCGGCAGCCACGGCCAGCTGCCGGCCAATATCGGCAGCTTGCAACCCATCACCCACCTGCCCGGCAGCGAg                                                        >  6:376837‑M1/1‑149 (MQ=255)                                                                                                gCAACCAACAGCACCTGGGCGACCTTATCAGCCAGTTCGCTGGCCACGACGT‑TACCTTCCATGTGCTGCAAAAACCCGGCAGCCACGGCCAGCTGCCGGCCAATATCGGCAGCTTGCAACCCATCACCCACCTGCCCGGCAGCGAGCAc                                                     >  3:36762/1‑149 (MQ=255)                                                                                                gCAACCAACAGCACCTGGGCGACCTTATCAGCCAGTTCGCTGGCCACGACGT‑TACCTTCCATGTGCTGCAAAAACCCGGCAGCCACGGCCAGCTGCCGGCCAATATCGGCAGCTTGCAACCCATCACCCACCTGCCCGGCAGCGAGCAc                                                     >  6:268902/1‑149 (MQ=255)                                                                                                  aaccaacAGCACCTGGGCGACCTTATCAGCCAGTTCGCTGGCCACGACGT‑TACCTTCCATGTGCTGCAAAAACCCGGCAGCCACGGCCAGCTGCCGGCCAATATCGGCAGCTTGCAACCCATCACCCACCTGCCCGGCAGCGAGCAcct                                                   <  8:1311/149‑1 (MQ=255)                                                                                                                     aCCTTATCAGCCAGTTCGCTGGCCACGACGT‑TACCTTCCATGTGCTGCAAAAACCCGGCAGCCACGGCCAGCTGCCGGCCAATATCGGCAGCTTGCAACCCATCACCCACCTGCCCGGCAGCGAGCACCTGCCTGCGTCCCCGGCCGTg                                <  7:222142/149‑1 (MQ=255)                                                                                                                              gCCAGTTCGCTGGCCACGACGT‑TACCTTCCATGTGCTGTAAAAACCCGGCAGCCACGGCCAGCTGCCGGCCAATATCGGCAGCTTGCACCCCATCACCCACCTGCCCGGCAGCGAGCACCTGCCTGCGTCCCCGGCCGTGGCCATCTgg                       >  1:283805/1‑149 (MQ=255)                                                                                                                              gCCAGTTCGCGGGCCACGACGT‑TACCTTCCATGTGCTGCAAAAACCCGGCAGCCACGGCCAGCTGCCGGCCAATATCGGCAGCTTGCAACCCATCACCCACCTGCCCGGCAGCGAGCACCTGCCTGCGTCCCCGGCCGTGGCCATCTgg                       <  3:236741/149‑1 (MQ=255)                                                                                                                                cAGTTCGCTGGCCACGACGT‑TACCTTCCATGTGCTGCAAAAACCCGGCAGCCACGGCCAGCTGCCGGCCAATATCGGCAGCTTGCAACCCATCACCCACCTGCCCGGCAGCGAGCACCTGCCTGCGTCCCCGGCCGTGGCCATCTGGGa                     >  2:275437/1‑149 (MQ=255)                                                                                                                                 aGTTCGCTGGCCACGACGT‑TACCTTCCATGTGCTGCAAAAACCCGGCAGCCACGGCCAGCTGCCGGCCAATATCGGCAGCTTGCAACCCATCACCCACCTGCCCGGCAGCGAGCACCTGCCTGCGTCCCCGGCCGTGGCCATCTGGGAc                    >  2:182638/1‑149 (MQ=255)                                                                                                                                          gCCACGACGT‑TACCTTCCATGTGCTGCAAAAACCCGGCAGCCACGGCCAGCTGCCGGCCAATATCGGCAGCTTGCAACCCATCACCCACCTGCCCGGCAGCGAGCACCTGCCTGCGTCCCCGGCCGTGGCCATCTGGGACCGGCAAgg            <  5:268902/148‑1 (MQ=255)                                                                                                                                          gCCACGACGT‑TACCTTCCATGTGCTGCAAAAACCCGGCAGCCACGGCCAGCTGCCGGCCAATATCGGCAGCTTGCAACCCATCACCCACCTGCCCGGCAGCGAGCACCTGCCTGCGTCCCCGGCCGTGGCCATCTGGGACCGGCAAGgc           >  8:264939/1‑149 (MQ=255)                                                                                                                                            cACGACGT‑TACCTTCCATGTGCTGCAAAAACCCGGCAGCCACGGCCAGCTGCCGGCCAATATCGGCAGCTTGCAACCCATCACCCACCTGCCCGGCAGCGAGCACCTGCCTGCGTCCCCGGCCGTGGCCATCt                         >  2:375793/1‑133 (MQ=255)                                                                                                                                            cACGACGT‑TACCTTCCATGTGCTGCAAAAACCCGGCAGCCACGGCCAGCTGCCGGCCAATATCGGCAGCTTGCAACCCATCACCCACCTGCCCGGCAGCGAGCACCTGCCTGCGTCCCCGGCCGTGGCCATCt                         <  1:375793/133‑1 (MQ=255)                                                                                                                                            cACGACGT‑TACCTTCCATGTGCTGCAAAAACCCGGCAGCCACGGCCAGCTGCCGGCCAATATCGGCAGCTTGCAACCCATCACCCACCTGCCCGGCAGCGAGCACCTGCCTGCGTCCCCGGCCGTGGCCATCTGGGACCGGCAAGgccg         >  2:25446/1‑149 (MQ=255)                                                                                                                                                   gttACCTTCCATGTGCTGCAAAAACCCGGCAGCCACGGCCAGCTGCCGGCCAATATCGGCAGCTTGCAACCCATCACCCACCTGCCCGGCAGCGAGCACCTGCCTGCGTCCCCGGCCGTGGCCATCTGGGACCGGCAAGGCCGCCTGGc   <  4:171162‑M2/146‑1 (MQ=255)                                                                                                                                                   gttACCTTCCATGTGCTGCAAAAACCCGGCAGCCACGGCCAGCTGCCGGCCAATATCGGCAGCTTGCAACCCATCACCCACCTGCCCGGCAGCGAGCACCTGCCTGCGTCCCCGGCCGTGGCCATCTGGGACCGGCAAGGCCGCCTGGc   <  1:275437‑M2/146‑1 (MQ=255)                                                                                                                                                   gttACCTTCCATGTGCTGCAAAAACCCGGCAGCCACGGCCAGCTGCCGGCCAATATCGGCAGCTTGCAACCCATCACCCACCTGCCCGGCAGCGAGCACCTGCCTGCGTCCCCGGCCGTGGCCATCTGGGACCGGCAAGGCCGCCTGGc   <  1:182638‑M2/146‑1 (MQ=255)                                                                                                                                                     tACCTTCCATGTGCTGCAAAAACCCGGCAGCCACGGCCAGCTGCCGGCCAATATCGGCAGCTTGCAACCCATCACCCACCTGCCCGGCAGCGAGCACCTGCCTGCGTCCCCGGCCGTGGCCATCTGGGACCGGCAAGGCCGCctggag  >  1:138619‑M2/2‑146 (MQ=255)                                                                                                                                                     tACCTTCCATGTGCTGCAAAAACCCGGCAGCCACGGCCAGCTGCCGGCCAATATCGGCAGCTTGCAACCCATCACCCACCTGCCCGGCAGCGAGCACCTGCCTGCGTCCCCGGCCGTGGCCATCTGGGACCGGCAAGGCCGCCTg     <  2:138619‑M2/144‑1 (MQ=255)                                                                                                                                                      |                                                                                                                                                   GACGGCAGCCAGTTACAGCTACCTGCCGAGCTGGCCGGTGCTGGCCCGATCCGCGTCGTGCATTTCTGGGACCCGGCCTGCCCATGCAACGTC‑GGCAACCAACAGCACCTGGGCGACCTTATCAGCCAGTTCGCTGGCCACGACGT‑TACCTTCCATGTGCTGCAAAAACCCGGCAGCCACGGCCAGCTGCCGGCCAATATCGGCAGCTTGCAACCCATCACCCACCTGCCCGGCAGCGAGCACCTGCCTGCGTCCCCGGCCGTGGCCATCTGGGACCGGCAAGGCCGCCTGGCT  >  NC_002947/5887277‑5887570

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.