New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5979607	75 (1.210)	6 (0.100)	5/254	NT	7.5%	coding (252/5049 nt)	PP_5242	GAF domain‑containing sensor histidine kinase
	?	NC_002947	= 5979660	77 (1.300)					coding (305/5049 nt)	PP_5242	GAF domain‑containing sensor histidine kinase

GTGAACTCAGCTATTTCCGCCTGCGCGACCCAGCCACAAATCAGGCCTGGATCGCCGTGCGCGCGCCGCTCGAGGCCCCTTCCGCCTGTCAGCGCCTGGAACGTGACTACCGCCTGCAACTGGACCCGCAGTGGGCGGTGATCCCCTCGGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5979456‑5979607 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcggcgACTGAGCGCCCGGCCGGGTACACCAGCAACGGGCCTTCGGCCGAGCGCACGAACGCCGAGGGGATCACCGCCCACTGCGGGTCCAGTTGCAGGCGGTAGTCACGTTCCAGGCGCTGACAGGCGGAAGGGGCCTCGAGCGGCGCGCG  <  NC_002947/5979660‑5979515                                                                                                                                                                                                                                                                                                            GTGAACTCAGCTATTTCCGCCTGCGCGACCCAGCCACAAATCAGGCCTGGATCGCCGTGCGCGCGCCGCTCGAGGCCCCTTCCGCCTGTCAGCGCCTGGAACGTGACTACCGCCTGCAACTGGACCCGCAGTGGGCGGTGATCCCCTCG                                                                                                                                                       <  6:348525/149‑1                                   CACAAATCAGGCCTGGATCGCCGTGCGCGCGCCGCTCGAGGCCCCTTCCGCCTGTCAGCGCCTGGAACGTGACTACCGCCTGCAACTGGACCCGCAGTGGGCGGTGATCCCCTCGGCGACTGAGCGCCCGGCCGGGTACACCAGCAACG                                                                                                                     >  7:170165/1‑149                                                                CGCCGCTCGAGGCCCCTTCCGCCTGTCAGCGCCTGGAACGTGACTACCGCCTGCAACTGGACCCGCAGTGGGCGGTGATCCCCTCGGCGACTGAGCGCCCGGCCGGGTACACCAGCAACGGGCCTTCGGCCGAGCGCACGAACGCCGAG                                                                                        <  6:140380/149‑1                                                                  CCGCTCGAGGCCCCTTCCGCCTGTCAGCGCCTGGAACGTGACTACCGCCTGCAACTGGACCCGCAGTGGGCGGTGATCCCCTCGGCGACTGAGCGCCCGGCCGGGTACACCAGCAACGGGCCTTCGGCCGAGCGCACGAACGCCGAGGG                                                                                      <  2:223525/149‑1                                                                  CCGCTCGAGGCCCCTTCCGCCTGTCAGCGCCTGGAACGTGACTACCGCCTGCAACTGGACCCGCAGTGGGCGGTGATCCCCTCGGCGACTGAGCGCCCGGCCGGGTACACCAGCAACGGGCCTTCGGCCGAGCGCACGAACGCCGAGGG                                                                                      <  8:170165/149‑1                                                                                                               CGCCTGCAACTGGACCCGCAGTGGGCGGTGATCCCCTCGGCGACTGAGCGCCCGGCCGGGTACACCAGCAACGGGCCTTCGGCCGAGCGCACGAACGCCGAGGGG                                                                                     >  7:184242/1‑105                                                                                                               CGCCTGCAACTGGACCCGCAGTGGGCGGTGATCCCCTCGGCGACTGAGCGCCCGGCCGGGTACACCAGCAACGGGCCTTCGGCCGAGCGCACGAACGCCGAGGGG                                                                                     <  8:184242/105‑1                                                                                                                                                      GCGACTGAGCGCCCGGCCGGGTACACCAGCAACGGGCCTTCGGCCGAGCGCCCGAACGCCGAGGGGATCACCGCCCACGGCGGGTCCAGTTGCAGGCGGTAGTCACGTTCCAGGCGCTGCCAGGCGGAAGGGGCCTCGAGCGGCGCGCG  >  6:255174/1‑149                                                                                                                                                                                                                                                                                                            GTGAACTCAGCTATTTCCGCCTGCGCGACCCAGCCACAAATCAGGCCTGGATCGCCGTGCGCGCGCCGCTCGAGGCCCCTTCCGCCTGTCAGCGCCTGGAACGTGACTACCGCCTGCAACTGGACCCGCAGTGGGCGGTGATCCCCTCGGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5979456‑5979607 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcggcgACTGAGCGCCCGGCCGGGTACACCAGCAACGGGCCTTCGGCCGAGCGCACGAACGCCGAGGGGATCACCGCCCACTGCGGGTCCAGTTGCAGGCGGTAGTCACGTTCCAGGCGCTGACAGGCGGAAGGGGCCTCGAGCGGCGCGCG  <  NC_002947/5979660‑5979515

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.