New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 6067082	54 (0.870)	4 (0.070)	4/254	NT	7.2%	coding (1206/1308 nt)	phoR	two‑component system sensor histidine kinase
	?	NC_002947	= 6067129	52 (0.880)					coding (1253/1308 nt)	phoR	two‑component system sensor histidine kinase

CCAGGGCGCACACCTGTCGGTGCAGGACTCGGGGGTGGGCATCGATGCCAAGCATTTGCCACGCCTGACCGAGCGCTTCTACCGCGTAGACTCCAGCCGTGCATCGAATACCGGCGGTACCGGGCTGGGGCTCGCAATCGTCAAGCATGTGCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/6066929‑6067082 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtgctgCCATGCCCCGGTACACTGCTGATTTCCAGCTTGCCCCGGTGGCGCATCAGCACATGCTTGACGATTGCGAGCCCCAGCCCGGTACCGCCGGTATTCGATGCACGGCTGGAGTCTACGCGGTAGAAGCGCTCGGTCAGGCGTGG  <  NC_002947/6067129‑6066987                                                                                                                                                                                                                                                                                                           CCAGGGCGCACACCTGTCGGTGCAGGACTCGGGGGTGGGCATCGATGCCAAGCATTTGCCACGCCTGACCGAGCGCTTCTACCGCGTAGACTCCAGCCGTGCATCGAATACCGGCGGTACCGGGCTGGGGCTCGCAATCGTCAAGCATG                                                                                                                                                      >  3:135973/1‑149    GGGCGCACACCTGTCGGTGCAGGACTCGGGGGTGGGCATCGATGCCAAGCATTTGCCACGCCTGACCGAGCGCTTCTACCGCGTAGACTCCAGCCGTGCATCGAATACCGGCGGTACCGGGCTGGGGCTCGCAATCGTCAAGCATGTGC                                                                                                                                                   <  1:354445/149‑1                                         ATCGATGCCAAGCATTTGCCACGCCTGACCGAGCGCTTCTACCGCGTAGACTCCAGCCGTGCATCGAATACCGGCGGTACCGGGCTGGGGCTCGCAATCGTCAAGCATGTGCTGCCATGCCCCGGTACACTGCTGATTTCCAGCTTGCC                                                                                                              >  1:351070/1‑149                                                            CACGCCTGACCGAGCGCTTCTACCGCGTAGACTCCAGCCGTGCATCGAATACCGGCGGTACCGGGCTGGGGCTCGCAATCGTCAAGCATGTGCTGCCATGCCCCGGTACACTGCTGATTTCCAGCTTGCCCCGGTGGCGCATCAGCACA                                                                                           <  2:351070/149‑1                                                                      CGAGCGCTTCTACCGCGTAGACTCCAGCCGTGCATCGAATACCGGCGGTACCGGGCTGGGGCTCGCAATCGTCAAGCATGTGCTGCCATGCCCCGGTACACTGCTGATTTCCAGCTTGCCCCGTTGGCGCATC                                                                                                 <  2:266680/133‑1                                                                      CGAGCGCTTCTACCGCGTAGACTCCAGCCGTGCATCGAATACCGGCGGTACCGGGCTGGGGCTCGCAATCGTCAAGCATGTGCTGCCATGCCCCGGTACACTGCTGATTTCCAGCTTGCCCCGGTGGCGCATC                                                                                                 >  1:266680/1‑133                                                                                                                                                     GTGCTGCCATGCCCCGGTACACTGCTGATTTCCAGCTTGCCCCGGTGGCGCATCAGCACATGCTTGACGATTGCGAGCCCCAGCCCGGTACCGCCGGTATTCGATGCACGGCTGGAGTCTACGCGGTAGAAGCGCTCGGTCAGGCGTGG  >  4:135973/1‑149                                                                                                                                                      TGCTGCCATGCCCCGGTACACTGCTGATTTCCAGCTTGCCCCGGTGGCGCATCAGCACATGCTTGACGATTGCGAGCCCCAGCCCGGTACCGCCGGTATTCGATGCACGGCTGGAGTCTACGCGGTAGAAGCGCTCGGTCAGGCGTGG  >  6:109535/1‑148                                                                                                                                                                                                                                                                                                           CCAGGGCGCACACCTGTCGGTGCAGGACTCGGGGGTGGGCATCGATGCCAAGCATTTGCCACGCCTGACCGAGCGCTTCTACCGCGTAGACTCCAGCCGTGCATCGAATACCGGCGGTACCGGGCTGGGGCTCGCAATCGTCAAGCATGTGCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/6066929‑6067082 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtgctgCCATGCCCCGGTACACTGCTGATTTCCAGCTTGCCCCGGTGGCGCATCAGCACATGCTTGACGATTGCGAGCCCCAGCCCGGTACCGCCGGTATTCGATGCACGGCTGGAGTCTACGCGGTAGAAGCGCTCGGTCAGGCGTGG  <  NC_002947/6067129‑6066987

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.