New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | = 1006304 | 51 (0.820) | 3 (0.050) | 3/254 | NT | 6.0% | coding (1234/2430 nt) | PP_0867 | FecA‑like outer membrane receptor |
? | NC_002947 | = 1006326 | 46 (0.780) | coding (1256/2430 nt) | PP_0867 | FecA‑like outer membrane receptor |
GTACCAGTCGCTGCGCGATTACGACTACTTCGCGGGCCGGCGCAAGGATGTGTCGTTCAAATGGCAGCGGCAGCTCGACGATGCCACCCAGTTCGAAGTGCTGACCTACTACACCGACAGCTTCCGCGGCAGCACAATAGCCTCGCGGGACATGAAGACGTTGTCGTCGT‑ACCCGCGCAACTACCACACCTTCGCCATTGAACCCCGTGTGTCGCGCATCTTC‑TTTGCCGGCCCAACCACCCAGGAAGTCAGTGTCGGTTACCGTTACCTGAAGGAAGCGATGCGCGAACAG > NC_002947/1006156‑1006447 | gTACCAGTCGCTGCGCGATTACGACTACTTCGCGGGCCGGCGCAAGGATGTGTCGTTCAAATGGCAGCGGCAGCTCGACGATGCCACCCAGTTCGAAGTGCTGACCTACTACACCGACAGCTTCCGCGGCAGCACAATAGCCTCGCGGG < 7:141287‑M1/149‑1 (MQ=255) cAGTCGCTGCGCGATTACGACTACTTCGCGGGCCGGCGCAAGGATGTGTCGTTCAAATGGCAGCGGCAGCTCGACGATGCCACCCAGTTCGAAGTGCTGACCTACTACACCGACAGCTTCCGCGGCAGCACAATAGCCTCGCGGGACAt > 6:169142/1‑149 (MQ=255) gTCGCTGCGCGATTACGACTACTTCGCGGGCCGGCGCAAGGATGTGTCGTTCAAATGGCAGCGGCAGCTCGACGATGCCACCCAGTTCGAAGTGCTGACCTACTACACCGACAGCTTCCGCGGCAGCACAATAGCCTCGCGGGACATg > 2:305564/1‑148 (MQ=255) cgcgATTACGACTACTTCGCGGGCCGGCGCAAGGATGTGTCGTTCAAATGGCAGCGGCAGCTCGACGATGCCACCCAGTTCGAAGTGCTGACCTACTACACCGACAGCTTCCGCGGCAGCACAATAGCCTCGCGGGACATGAAGACGtt < 1:327245/149‑1 (MQ=255) cgcgATTACGACTACTTCGCGGGCCGGCGCAAGGATGTGTCGTTCAAATGGCAGCGGCAGCTCGACGATGCCACCCAGTTCGAAGTGCTGACCCACTACACCGACAGCTTCCGCGGCAGCACAATAGCCTCGCGGGACATGAAGACGtt < 6:96621/149‑1 (MQ=255) gATTACGACTACTTCGCGGGCCGGCGCAAGGATGTGTCGTTCAAATGGCAGCGGCAGCTCGACGATGCCACCCAGTTCGAAGTGCTGACCTACTACACCGACAGCTTCCGCGGCAGCACAATAGCCTCGCGGGACATGAAGACGTTgtc > 1:294914/1‑149 (MQ=255) ttACGACTTCTTCGCGGGCCGGCGCAAGGATGTGTCGTTCAAATGGCAGCGGCAGCTCGACGATGCCACCCAGTTCGAAGTGCTGACCTACTACACCGACAGCTTCCGCGGCAGCACAATAGCCTCGCGGGACATGAAGACGTTgtcgt < 3:96274/149‑1 (MQ=255) aCGACTACTTCGCGGGCCGGCGCAAGGATGTGTCGTTCAAATGGCAGCGGCAGCTCGACGATGCCACCCAGTTCGAAGTGCTGACCTACTACACCGACAGCTTCCGCGGCAGCACAATAGCCTCGCGGGACATGAAGACGTTgtcgtc < 2:8164/148‑1 (MQ=255) aCGACTACTTCGCGGGCCGGCGCAAGGATGTGTCGTTCAAATGGCAGCGGCAGCTCGACGATGCCACCCAGTTCGAAGTGCTGACCTACTACACCGACAGCTTCCGCGGCAGCACAATAGCCTCGCGGGACATGAAGACGTTgtcgtc < 7:177662/148‑1 (MQ=255) gACTACTTCGCGGGCCGGCGCAAGGATGTGTCGTTCAAATGGCAGCGGCAGCTCGACGATGCCACCCAGTTCGAAGTGCTGACCTACTACACCGACAGCTTCCGCGGCAGCACAATAGCCTCGCGGGACATGAAGACGTTGTCGTCGT‑a > 4:220134/1‑149 (MQ=255) gACTACTTCGCGGGCCGGCGCAAGGATGTGTCGTTCAAATGGCAGCGGCAGCTCGACGATGCCACCCAGTTCGAAGTGCTGACCTACTACACCGACAGCTTCCGCGGCAGCACAATAGCCTCGCGGGACATGAAGACGTTGTCGTCGT‑a > 2:148080/1‑149 (MQ=255) cgcgGGCCGGCGCAAGGATGTGTCGTTCAAATGGCAGCGGCAGCTCGACGATGCCACCCAGTTCGAAGTGCTGACCTACTACACCGACAGCTTCCGCGGCAGCACAATAGCCTCGCGGGACATGAAGACGTTGTCGTCGT‑ACCCgcgc > 2:202464/1‑148 (MQ=255) gcgGGCCGGCGCAAGGATGTGTCGTTCAAATGGCAGCGGCAGCTCGACGATGCCACCCAGTTCGAAGTGCTGACCTACTACACCGACAGCTTCCGCGGCAGCACAATAGCCTCGCGGGACATGAAGACGTTGTCGTCGT‑ACCCGCGCa < 7:182440/148‑1 (MQ=255) gCCGGCGCAAGGATGTGTCGTTCAAATGGCAGCGGCAGCTCGACGATGCCACCCAGTTCGAAGTGCTGACCTACTACACCGACAGCTTCCGCGGCAGCACAATAGCCTCGCGGGACATGAAGACGTTGTCGTCGT‑ACCCGCGCAACTAc > 2:7430/1‑149 (MQ=255) gcgcAAGGATGTGTCGTTCAAATGGCAGCGGCAGCTCGACGATGCCACCCAGTTCGAAGTGCTGACCTACTACACCGACAGCTTCCGCGGCAGCACAATAGCCTCGCGGGACATGAAGACGTTGTCGTCGT‑ACCCGCGCAACTACcaca < 5:160184/149‑1 (MQ=255) gcAAGGATGTGTCGTTCAAATGGCAGCGGCAGCTCGACGATGCCACCCAGTTCGAAGTGCTGACCTACTACACCGACAGCTTCCGAGGCAGCACAATAGCCTCGCGGGACATGAAGACGTTGTCGTCGT‑ACCCGCGCAACTACCACAcc > 7:282084/1‑149 (MQ=255) aaGGATGTGTCGTTCAAATGGCAGCGGCAGCTCGACGATGCCACCCAGTTCGAAGTGCTGACCTACTACACCGACAGCTTCCGCGGCAGCACAATAGCCTCGCGGGACATGAAGACGTTGTCGTCGT‑ACCCGCGCAACTACCACACCtt < 1:335228/149‑1 (MQ=255) tgtCGTTCAAATGGCAGCGGCAGCTCGACGATGCCACCCAGTTCGAAGTGCTGACCTACTACACCGACAGCTTCCGCGGCAGCACAATAGCCTCGCGGGACATGAAGACGTTGTCGTCGT‑ACCCGCGCAACTACCACACCTTCGCCAtt < 1:7430/149‑1 (MQ=255) tgtCGTTCAAATGGCAGCGGCAGCTCGACGATGCCACCCAGTTCGAAGTGCTGACCTACTACACCGACAGCTTCCGCGGCAGCACAATAGCCTCGCGGGACATGAAGACGTTGTCGTCGT‑ACCCGCGCAACTACCACACCTTCGCCAt < 6:104940/148‑1 (MQ=255) gTTCAAATGGCAGCGGCAGCTCGACGATGCCACCCAGTTCGAAGTGCTGACCTACTACACCGACAGCTTCCGCGGCAGCACAATAGCCTCGCGGGACATGAAGACGTTGTCGTCGT‑ANCCGCGCAACTACCACACCTTCGCCATTGaa < 1:36675/148‑1 (MQ=255) gTTCAAATGGCAGCGGCAGCTCGACGATGCCACCCAGTTCGAAGTGCTGACCTACTACACCGACAGCTTCCGCGGCAGCACAATAGCCTCGCGGGACATGAAGACGTTGTCGTCGT‑ACCCGCGCAACTACCACACCTTCGCCATTGAAc < 1:148080/149‑1 (MQ=255) ttCAAATGGCAGCGGCAGCTCGACGATGCCACCCAGTTCGAAGTGCTGACCTACTACACCGACAGCTTCCGCGGCAGCACAATAGCCTCGCGGGACATGAAGACGTTGTCGTCGT‑ACCCGCGCAACTACCACACCTTCGCCATTGAAcc > 6:204744/1‑149 (MQ=255) ttCAAATGGCAGCGGCAGCTCGACGATGCCACCCAGTTCGAAGTGCTGACCTACTACACCGACAGCTTCCGCGGCAGCACAATAGCCTCGCGGGACATGAAGACGTTGTCGTCGT‑ACCCGCGCAACTACCACACCTTCGCCATTGAAcc > 1:306633/1‑149 (MQ=255) aaTGGCAGCGGCAGCTCGACGATGCCACCCAGTTCGAAGTGCTGACCTACTACACCGACAGCTTCCGCGGCAGCACAATAGCCTCGCGGGACATGAAGACGTTGCCGTCGT‑ACCCGCGCAACTACcac < 4:374082/128‑1 (MQ=255) aaTGGCAGCGGCAGCTCGACGATGCCACCCAGTTCGAAGTGCTGACCTACTACACCGACAGCTTCCGCGGCAGCACAATAGCCTCGCGGGACATGAAGACGTTGCCGTCGT‑ACCCGCGCAACTACcac > 3:374082/1‑128 (MQ=255) ggcagcggcagcTCGACGATGCCACCCAGTTCGAAGTGCTGACCTACTACACCGACAGCTTCCGCGGCAGCACAATAGCCTCGCGGGACATGAAGACGTTGTCGTCGT‑ACCCGCGCAACTACCACACCTTCGCCATTGAACCCCgtgtg > 3:273322/1‑149 (MQ=255) gcagcggcagcTCGACGATGCCACCCAGTTCGAAGTGCTGACCTACTACACCGACAGCTTCCGCGGCAGCACAATAGCCTCGCGGGtacgacgacaacgtcttcatgtcccgcgagg < 4:79968‑M1/117‑32 (MQ=255) gcTCGACGATGCCACCCAGTTCGAAGTGCTGACCTACTACACCGACAGCTTCCGCGGCAGCACAATAGCCTCGCGGGACATGAAGACGTTGTCGTCGT‑ACCCGCGCAACTACCACACCTTCGCCATTGAACCCCGTGTGTCGCGCAtct < 5:169142/149‑1 (MQ=255) cTCGACGATGCCACCCAGTTCGAAGTGCTGACCTACTACACCGACAGCTTCCGCGGCAGCACAATAGCCTCGCGGGACATGAAGACGTTGTCGTCGT‑ACCCGCGCAACTACCACACCTTCGCCATTGAACCCCGTGTGTCGCGCAtctt > 5:334619/1‑149 (MQ=255) acgaTGCCACCCAGTTCGAAGTGCTGACCTACTACACCGACAGCTTCCGCGGCAGCACAATAGCCTCGCGGGACATGAAGACGTTGTCGTCGT‑ACCCGCGCAACTACCACACCTTCGCCATTGAACCCCGTGTGTCGCGCATCTTC‑ttt < 3:220134/149‑1 (MQ=255) cgaTGCCACCCAGTTCGAAGTGCTGACCTACTACACCGACAGCTTCCGCGGCAGCACAATAGCCTCGCGGGACATGAAGACGTTGTCGTCGT‑ACCCGCGCAACTACCACACCTTCGCCATTGAACCCCGTGTGTCGCGCATCTTC‑TTTg < 5:204744/149‑1 (MQ=255) aTGCCACCCAGTTCGAAGTGCTGACCTACTACACCGACAGCTTCCGCGGCAGCACAATAGCCTCGCGGGACATGAAGACGTTGTCGTCGTCACCCGCGCAACTACCACACCTTCGCCATTGAACCCCGTGTGTCGCGCATCTTC‑TTTGc < 1:305564/149‑1 (MQ=255) cACCCAGTTCGAAGTGCTGACCTACTACACCGACAGCTTCCGCGGCAGCACAATAGCCTCGCGGGtacgacgacaacgtcttcatgtcccgcgag > 2:71828‑M1/1‑65 (MQ=255) cACCCAGTTCGAAGTGCTGACCTACTACACCGACAGCTTCCGCGGCAGCACAATAGCCTCGCGGGtacgacgacaacgtcttcatgtcccgcgag < 1:71828‑M1/95‑31 (MQ=255) aCCCAGTTCGAAGTGCTGACCTACTACACCGACAGCTTCCGCGGCAGCACAATAGCCTCGCGGGACATGAAGACGTTGTCGTCGT‑ACCCGCGCAACTACCACACCTTCGCCATTGAACCCCGTGTGTCGCGCATCTTC‑TTTGCCGGcc > 6:142533/1‑148 (MQ=255) aCCCAGTTCGAAGTGCTGACCTACTACACCGACAGCTTCCGCGGCAGCACAATAGCCTCGCGGGACATGAAGACGTTGTCGTCGT‑ACCCGCGCAACTACCACACCTTCGCCATTGAACCCCGTGTGTCGCGCATCTTC‑TTTGCCGGcc > 1:357239/1‑148 (MQ=255) ccAGTTCGAAGTGCTGACCTACTACACCGACAGCTTCCGCGGCAGCACAATAGCCTCGCGGGACATGAAGACGTTGTCGTCGT‑ACCCGCGCAACTACCACACCTTCGCCATTGAACCCCGTGTGTCGCGCATCTTC‑TTTGCCGGCCCaa > 2:184867/1‑149 (MQ=255) gTTCGAAGTGCTGACCTACTACACCGACAGCTTCCGCGGCAGCACAATAGCCTCGCGGGACATGAAGACGTTGTCGTCGT‑ACCCGCGCAACTACCACACCTTCGCCATTGAACCCCGTGTGTCGCGCATCTTC‑TTTGCCGGCCCAacca > 4:266253/1‑149 (MQ=255) aaGTGCTGACCTACTACACCGACAGCTTCCGCGGCAGCACAATAGCCTCGCGGGACATGAAGACGTTGTCGTCGT‑ACCCGCGCAACTACCACACCTTCGCCATTGAACCCCGTGTGTCGCGCATCTTC‑TTTGCCGGCCCAACCACCCAg < 4:273322/149‑1 (MQ=255) gTGCTGACCTACTACACCGACAGCTTCCGCGGCAGCACAATAGCCTCGCGGGACATGAAGACGTTGTCGTCGT‑ACCCGCGCAACTACCACACCTTCGCCATTGAACCCCGTGTGTCGCGCATCTTC‑TTTGCCGGCCCAACCACCCAgg > 5:87899/1‑148 (MQ=255) aCCTACTACACCGACAGCTTCCGCGGCAGCACAATAGCCTCGCGGGACATGAAGACGTTGTCGTCGT‑ACCCGCGCAACTACCACACCTTCGCCATTGAACCCCGTGTGTCGCGCATCTTCTTTTGCCGGCCCAACCACCCAGGAAGt < 1:202464/147‑1 (MQ=255) aCCTACTACACCGACAGCTTCCGCGGCAGCACAATAGCCTCGCGGGACATGAAGACGTTGTCGTCGT‑ACCCGCGCAACTACCACACCTTCGCCATTGAACCCCGTGTGTCGCGCATCTTC‑TTTGCCGGCCCAACCACCCAGGAAGTCa < 1:184867/148‑1 (MQ=255) ctactaCACCGACAGCTTCCGCGGCAGCACAATAGCCTCGCGGGACATGAAGACGTTGTCGTCGT‑ACCCGCGCAACTACCACACCTTCGCCATTGAACCCCGTGTGTcgcg > 1:154209/1‑111 (MQ=255) ctactaCACCGACAGCTTCCGCGGCAGCACAATAGCCTCGCGGGACATGAAGACGTTGTCGTCGT‑ACCCGCGCAACTACCACACCTTCGCCATTGAACCCCGTGTGTcgcg < 2:154209/111‑1 (MQ=255) ctacACCGACAGCTTCCGCGGCAGCACAATAGCCTCGCGGGACATGAAGACGTTGTCGTCGT‑ACCCGCGCAACTACCACACCTTCGCCATTGAACCCCGTGTGTCGCGCATCTTC‑TTTGCCGGCCCAACCACCCAGGAAGTCAgtgt < 2:357239/147‑1 (MQ=255) cacCGACAGCTTCCGCGGCATCACAATAGCCTCGCGGGACATGAAGACGTTGTCGTCGT‑ACCCGCGCAACTACCACACCTTCGCCATTGTACCGCGTGTGTCGCGCATCTTC‑TTTGCCGGCCCAACCACCCAGGAAGTCAGTGTCgg < 8:282084/147‑1 (MQ=255) cacCGACAGCTTCCGCGGCAGCACAATAGCCTCGCGGGACATGAAGACGTTGTCGTCGT‑ACCCGCGCAACTACCACACCTTCGACATTGAACCCCGTGTGTCGCGCATCTTC‑TTTGCCGGCCCAACCACCCAGGAAGTCAGTGTCGgt > 2:83312/1‑148 (MQ=255) cGACAGCTTCCGCGGCAGCACAATAGCCTCGCGGGACATGAAGACGTTGTCGTCGT‑ACCCGCGCAACTACCACACCTTCGCCATTGAACCCCGTGTGTCGCGCATCTTC‑TTTGCCGGCCCAACCACCCAGGAAGTCAGTGTCGgttacc > 7:139295/1‑149 (MQ=255) cAGCTTCCGCGGCAGCACAATAGCCTCGCGGGACATGAAGACGTTGTCGTCGT‑ACCCGCGCAACTACCACACCTTCGCCATTGAACCCCGTGTGTCGCGCATCTTC‑TTTGCCGGCCCAACCACCCAGGAAGTCAGTGTCGgttaccgtt < 6:334619/149‑1 (MQ=255) ttCCGCGGCAGCACAATAGCCTCGCGGGACATGAAGACGTTGTCGTCGT‑ACCCGCGCAACTACCACACCTTCGCCATTGAACCCCGTGTGTCGCGCATCTTC‑TTTGCCGGCCCAACCACCCAGGAAGTCAGTGTCGgttaccgttaccg > 4:116577/1‑148 (MQ=255) ttCCGCGGCAGCACAATAGCCTCGCGGGACATGAAGACGTTGTCGTCGT‑ACCCGCGCAACTACCACACCTTCGCCATTGAACCCCGTGTGTCGCGCATCTTC‑TTTGCCGGCCCAACCACCCAGGAAGTCAGTGTCGGTTACCGTTACCt > 3:161835/1‑149 (MQ=255) cagcaCAATAGCCTCGCGGGACATGAAGACGTTGTCGTCGT‑ACCCGCGCAACTACCACACCTTCGCCATTGAACCCCGTGTGTCGCGCATCTTC‑TTTGCCGGCCCAACCACCCAGGAAGTCAGTGTCGGTTACCGTTACCTgaaggaag < 2:306633/149‑1 (MQ=255) cagcaCAATAGCCTCGCGGGACATGAAGACGTTGTCGTCGT‑ACCCGCGCAACTACCACACCTTCGCCATTGAACCCCGTGTGTCGCGCATCTTC‑TTTGCCGGCCCAACCACCCAGGAAGTCAGTGTCGGTTACCGTTACCTgaaggaag > 1:225214/1‑149 (MQ=255) aTAGCCTCGCGGGACATGAAGACGTTGTCGTCGT‑ACCCGCGCAACTACCACACCTTCGCCATTGAACCCCGTGTGTCGCGCATCTTC‑TTTGCCGGCCCAACCACCCAGGAAGTCAGTGTCGGTTACCGTTACCTGAAGGAAGCGATgcg < 1:83312/149‑1 (MQ=255) ccTCGCGGGACATGAAGACGTTGTCGTCGT‑Acccgcgaggctattgtgctgccgcggaagctgtcggtgtagtaggtcagcacttcgaactgggtggcatcgtcgagctgccgctgc < 4:79968‑M2/117‑87 (MQ=255) ccTCGCGGGACATGAAGACGTTGTCGTCGT‑ACCCGCGCAACTACCACACCTTCGCCATTGAACCCCGTGTGTCGCGCATCTTC‑TTTGCCGGCCCAACCACCCAGGAAGTCAGTGTCGGTTACCGTTACCTGAAGGAAGCGATGCGCGaa > 4:235181/1‑149 (MQ=255) ccTCGCCGGACATGAAGACGTTGTCGTCGT‑ACCCGCGCAACTACCACACCTTCGCCATTGAACCCCGTCTGTCGCCCAGCTTC‑TTTGCCGGCCCAACCACCCAGGAAGTCAGTCACGGATACCGTTACATCAAGGAAGCGATGCGCGaa > 5:80662/1‑149 (MQ=255) cTCGCGGGACATGAAGACGTTGTCGTCGT‑Acccgcgaggctattgtgctgccgcggaagctgtcggtgtagtaggtcagcacttcgaactgggtg > 2:71828‑M2/1‑30 (MQ=255) cTCGCGGGACATGAAGACGTTGTCGTCGT‑Acccgcgaggctattgtgctgccgcggaagctgtcggtgtagtaggtcagcacttcgaactgggtg < 1:71828‑M2/95‑66 (MQ=255) tCGCGGGACATGAAGACGTTGTCGTCGT‑ACCCGCGCAACTACCACACCTTCGCCATTGAACCCCGTGTGTCGCGCATCTTC‑TTTGCCGGCCCAACCACCCAGGAAGTCAGTGTCGGTTACCGTTACCTGAAGGAAGCGATGCGCGAACa > 4:197316/1‑149 (MQ=255) gcgGGACATGAAGACGTTGTCGTCGT‑ACCCGCGCAACTACCACACCTTCGCCATTGAACCCCGTGTGTCGCGCATCTTC‑TTTGCCGGCCCAACCACCCAGGAAGTCAGTGTCGGTTACCGTTACCTGAAGGAAGCGATGCGCGAACAg < 2:294914/148‑1 (MQ=255) ggACATGAAGACGTTGTCGTCGT‑ACCCGCGCAACTACCACACCTTCGCCATTGAACCCCGTGTGTCGCGCATCTTC‑TTTGCCGGCCCAACCACCCAGGAAGTCAGTGTCGGTTACCGTTACCTGAAGGAAGCCATgcg > 1:152706/1‑138 (MQ=255) | GTACCAGTCGCTGCGCGATTACGACTACTTCGCGGGCCGGCGCAAGGATGTGTCGTTCAAATGGCAGCGGCAGCTCGACGATGCCACCCAGTTCGAAGTGCTGACCTACTACACCGACAGCTTCCGCGGCAGCACAATAGCCTCGCGGGACATGAAGACGTTGTCGTCGT‑ACCCGCGCAACTACCACACCTTCGCCATTGAACCCCGTGTGTCGCGCATCTTC‑TTTGCCGGCCCAACCACCCAGGAAGTCAGTGTCGGTTACCGTTACCTGAAGGAAGCGATGCGCGAACAG > NC_002947/1006156‑1006447 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |