New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2731942 =	47 (0.760)	3 (0.050)	3/252	NT	6.2%	coding (1279/2361 nt)	polB	DNA polymerase II
	?	NC_002947	2731986 =	47 (0.800)					coding (1323/2361 nt)	polB	DNA polymerase II

TACATTCCACAGATGCACCGCCTTGGCTTTGTCGCGCCCAGCCTTGGCAGCCGGCCGGACGAAGCCAGCCC‑CGGCGGGTTTGTCATGGATTCGCGGCCAGGGCTTTACGACTCGGTGCTGGTGCTGGACTACAAGAGCCTGTACCCGTCGATCATCCGGACCTTTCTCATCGACCCGGTCGGGCTGATCGAAGGCCTACGCCAGCCTGACGACGCACATTCGGTCGAGGGCTTTCGCGGTGGGCGGTTTTCACGCACACAGCACTGCCTGCCAGCCATCGTCGAACGGGTGTGG  >  NC_002947/2731795‑2732088                                                                                                                                                     |                                                                                                                                                   tACATTCCACAGATGCACCGCCTTGGCTTTGTCGCGCCCAGCCTTGGCAGCCGGCCGGACGAAGCCAGCCC‑CGGCGGGTTTGTCATGGATTCGCGGCCAGGGCTTTACGACTCGGTGCTGGTGCTGGACTACAAGAGCCTGTACCCGt                                                                                                                                                    <  8:316706/148‑1 (MQ=255)    cagcggcgcattgccctcgcgcttggccgcttccctgccctgccacacccgttcgacgatggctggcaggcagtgctgtgtgcgtgaaaaccgcccaccgcgaaagccctcgaccgaatgtgcgtcgtcaggctggcgtaggcctTCGa                                                                                                                                                 <  3:343482‑M1/4‑1 (MQ=255)     cggcgcattgccctcgcgcttggccgcttccctgccctgccacacccgttcgacgatggctggcaggcagtgctgtgtgcgtgaaaaccgctcccaccgcgaaagccctcgaccgaatgtgcgtcgtcaggctggcgtaggcctTCGat                                                                                                                                                >  1:301501‑M1/145‑149 (MQ=255)       ccACAGATGCACCGCCTTGGCTTTGTCGCGCCCAGCCTTGGCAGCCGGCCGGACGAAGCCAGCCCTAGGCGCGTTTGTCATGGATTCGCGGCCAGGGCTTTACTACTCGGTGCTGGTGCAGGACTACAAGAGCCTGTACCCGTCGatca                                                                                                                                              >  1:310164/1‑149 (MQ=255)       ccACAGATGCACCGCCTTGGCTTTGTCGCGCCCAGCCTTGGCAGCCGGCCGGACGAAGCCAGCCC‑CGGCGGGTTTGTCATGGATTCGCGGCCAGGGCTTTACGACTCGGTGCTGGTGCTGGACTACAAGAGCCTGTACCCGTCGatca                                                                                                                                              <  7:45924/148‑1 (MQ=255)        cacaGATGCACCGCCTTGGCTTTGTCGCGCCCAGCCTTGGCAGCCGGCCGGACGAAGCCAGCCC‑CGGCGGGTTTGTCATGGATTCGCGGCCAGGGCTTTACGACTCGGTGCTGGTGCTGGACTACAAGAGCCTGTACCCGTCGatcatc                                                                                                                                            <  7:9955/149‑1 (MQ=255)            gATGCACCGCCTTGGCTTTGTCGCGCCCAGCCTTCGCAGCCGGCCGGACGAAGCCAGCCC‑CGGCGGGTTTGTCATGGATTCGCGGCCAGGGCTTTACGACTCGGTGCTGGTGCTGGACTACAAGAGCCTGTACCCGTCGATCATCCGGa                                                                                                                                        <  1:243816/149‑1 (MQ=255)                cACCGCCTTGGCTTTGTCTCGCCCAGCCTTGGCAGCCGGCCGGACGAAGCCAGCCC‑CGGCGGGTGTGTCATGGATTCGCGGCCAGGGCTTTACGACTCGCTGCTGGTGCTGGACTACAAGAGCCTGTCCCCGTCGATCAGCCGGACCtt                                                                                                                                    >  5:15865/1‑149 (MQ=255)                         ggCTTTGTCGCGCCCAGCCTTGGCAGCCGGCCGGACGAAGCCAGCCC‑CGGCGGGTTTGTCATGGATTCGCGGCCAGGGCTTTACGACTCGGTGCTGGTGCTGGACTACAAGAGCCTGTACCCGTCGATCATCCGGACCTTTCTCATc                                                                                                                             <  1:143369/147‑1 (MQ=255)                                  gcgcCCTGCCTTGGCAGCGGTCCGGAGGAAGCCAGCCC‑CGGCGGGTTTGTCATGGATTTGCGGGCAGGGCTTTACGACTCGGGGCTGGTGCTGGACTACAAGAGCCTGTACCCGTCGATCATCCGGACCTTTCTCATCGACCCGGTCg                                                                                                                   <  1:313289/148‑1 (MQ=255)                                  gcgcCCAGCCTTGGCAGCCGGCCGGACGAAGCCAGCCC‑CGGCGGGTTTGTCATGGATTCGCGGCCAGGGCTTTACGACTCGGTGCTGGTGCTGGACTACAAGAGCCTGTACCCGTCGATCATCCGGACCTTTCTCATCGACCCGGTCgg                                                                                                                  <  1:108205/149‑1 (MQ=255)                                   cgcCCAGCCTTGGCAGCCGGCCGGACGAAGCCAGCCC‑CGGCGGGTTTGTCATGGATTCGCGGCCAGGGCTTTACGACTCGGTGCTGGTGCTGGACTACAAGAGCCTGTACCCGTCGATCATCCGGACCTTTCTCATCGACCCGGTCggg                                                                                                                 <  2:178419/149‑1 (MQ=255)                                    gcCCAGCCTTGGCAGCCGGCCGGACGAAGCCAGCCC‑CGGCGGGTTTGTCATGGATTCGCGGCCAGGGCTTTACGACTCGGTGCTGGTGCTGGACTACAAGAGCCTGTACCCGTCGATCATCCGGACCTTTCTCATCGACCCgggcgggc                                                                                                                <  3:151485/149‑1 (MQ=255)                                     cccAGCCTTGGCAGCCGGCCGGACGAAGCCAGCCC‑CGGCGGGTTTGTCATGGATTCGCGGCCAGGGCTTTACGACTCGGTGCTGGTGCTGGACTACAAGAGCCTGTACCCGTCGATCATCCGGACCTTTCTCATCGACCCGGTCGGGCt                                                                                                               <  4:117763/149‑1 (MQ=255)                                        aGCCTTGGCAGCCGGCCGGACGAAGCCAGCCC‑CGGCGGGTTTGTCATGGATTCGCGGCCAGGGCTTTACGACTCGGTGCTGGTGCTGGACTACAAGAGCCTGTACCCGTCGATCATCCGGACCTTTCTCATc                                                                                                                             <  4:71332/132‑1 (MQ=255)                                        aGCCTTGGCAGCCGGCCGGACGAAGCCAGCCC‑CGGCGGGTTTGTCATGGATTCGCGGCCAGGGCTTTACGACTCGGTGCTGGTGCTGGACTACAAGAGCCTGTACCCGTCGATCATCCGGACCTTTCTCATc                                                                                                                             >  3:71332/1‑132 (MQ=255)                                         gCCTTGGCAGCCGGCCGGACGAAGCCAGCCC‑CGGCGGGTTTGTCATGGATTCGCGGCCAGGGCTTTACGACTCGGTGCTGGTGCTGGACTACAAGAGCCTGTACCCGTCGATCATCCGGACCTTTCTCATCGACCCGGTCGGGCTGATc                                                                                                           >  4:337199/1‑149 (MQ=255)                                              ggCAGCCGGCCGGACGAAGCCAGCCC‑CGGCGGGTTTGTCATGGATTCGCGGCCAGGGCTTTACGACTCGGTGCTGGTGCTGGACTACAAGAGCCTGTACCCGTCGATCATCCGGACCTTTCTCATCGACCCGGTCGGGCTGATCGaa                                                                                                        <  1:225815/147‑1 (MQ=255)                                                acacccgttcgacgatggctggcaggcagtgctgtgtgcgtgaaaaccgccccccgcgaaagccctcgaccgaatgtgcgtcgtcaggctggcgtaggcctTCGATCATCCGGACCTTTCTCATCGACCCGGTCGGGCTGAtcgaactc                                                                                                     <  6:114425‑M1/48‑4 (MQ=255)                                                       ccggACGAAGCCAGCCC‑CGGCGGGTTTGTCATGGATTCGCGGCCAGGGCTTTACGACTCGGTGCTGGTGCTGGACTACAAGAGCCTGTACCCGTCGATCATCCGGACCTTTCTCATCGACCCGGTCGGGCTGATCGAAGGCCTACGCCa                                                                                             <  3:10407/149‑1 (MQ=255)                                                         gacgatggctggcaggcagtgctgtgtgcgtgaaaaccgcccaccggcgaaagccctcgaccgaatgtgcgtcgtcaggctggcgtaggcctTCGATCATCCGGACCTTTCTCATCGACCCGGTCGGGCTGATCGa                                                                                                         <  1:86023‑M1/44‑1 (MQ=255)                                                          gacgatggctggcaggcagtgctgtgtgcgtgaaaaccgcccaccgcgaaagccctcgaccgaatgtgcgtcgtcaggctggcgtaggcctTCGATCATCCGGACCTTTCTCATCGACCCGGTCGGGCTGATCGa                                                                                                         >  2:86023‑M1/92‑135 (MQ=255)                                                             gAAGCCAGCCC‑CGGCGGGTTTGTCATGGATTCGCGGCCAGGGCTTTACGACTCGGTGCTGGTGCTGGACTACAAGAGCCTGTACCCGTCGATCATCCGGACCTTTCTCATCGACCCGGTCGGGCTGATCGAAGGCCTACGCCAGCCTga                                                                                       >  4:256674/1‑149 (MQ=255)                                                                  cagccC‑CGGCGGGTTTGTCATGGATTCGCGGCCAGGGCTTTACGCCTCGGTGCTGGTGCTGGACTACAAGAGCCTGTACCCGTCGATCATCCGGACCTTTCTCATCGACCCGGTCGGGCTGATCGAAGGCCGACGCCAGCCTGacgacg                                                                                  >  4:36001/1‑149 (MQ=255)                                                                  cagccC‑CGGCGGGTTTGTCATGGATTCGCGGCCAGGGCTTTACGACTCGGTGCTGGTGCTGGACTACAAGAGCCTGTACCCGTCGATCATCCGGCCCTTTCTCATCGACCCGGTCGGGCTGATCGAAGGCCTACGCCAGCCTGacgacg                                                                                  >  2:135568/1‑149 (MQ=255)                                                                  cagccC‑CGGCGGGTTTGTCATGGATTCGCGGCCAGGGCTTTACGACTCGGTGCTGGTGCTGGACTACAAGAGCCTGTACCCGTCGATCATCCGGACCTTTCTCATCGACCCGGTCGGGCTGATCGAAGGCCTACGCCAGCCTGacgacg                                                                                  <  3:50362/149‑1 (MQ=255)                                                                   agccC‑CGGCGGGTTTGTCATGGATTCGCGGCCAGGGCTTTACGACTCGGTGCTGGTGCTGGACTACAAGAGCCTGTACCCGTCGATCATCCGGACCTTTCTCATCGACCCGGTCGGGCTGATCGAAGGCCTACGCCAGCCTGacgacg                                                                                  >  2:363727/1‑148 (MQ=255)                                                                              ggTTTGTCATGGATTCGCGGCCAGGGCTTTACGACTCGGTGCTGGTGCTGGACTACAAGAGCCTGTACCCGTCGATCATCCGGACCTTTCTCATCGACCCGGTCGGGCTGATCGAAGGCCTACGCCAGCCTGACGACGCACATTCGGTc                                                                       >  6:115418/1‑149 (MQ=255)                                                                                    tCATGGATTCGCGGCCAGGGCTTTACGACTCGGTGCTGGTGCTGGACTACAAGAGCCTGTACCCGTCGATCATCCGGACCTTTCTCATCGACCCGGTCGGGCTGATCGAAGGCCTACGCCAGCCTGACGACGCACATTCGGTCGAGGGc                                                                 >  5:369851/1‑149 (MQ=255)                                                                                      aTGGATTCGCGGCCAGGGCTTTACGACTCGGTGCTGGTGCTGGACTACAAGAGCCTGTACCCGTCGATCATCCGGACCTTTCTCATCGACCCGGTCGGGCTGATCGAAGGCCTACGCCAGCCTGACGACGCACATTCgg                                                                         >  8:198856/1‑139 (MQ=255)                                                                                      aTGGATTCGCGGCCAGGGCTTTACGACTCGGTGCTGGTGCTGGACTACAAGAGCCTGTACCCGTCGATCATCCGGACCTTTCTCATCGACCCGGTCGGGCTGATCGAAGGCCTACGCCAGCCTGACGACGCACATTCgg                                                                         <  7:198856/139‑1 (MQ=255)                                                                                                  ccAGGGCTTTACGACTCGGTGCTGGTGCTGGACTACAAGAGCCTGTACCCGTCGATCATCCGGACCTTTCTCATCGACCCGGTCGGGCTGATCGAAGGCCTACGCCAGCCTGACGACGCACATTCGGTCGAGGGCTTTCGCGGTg                                                       <  1:339287/145‑1 (MQ=255)                                                                                                  ccAGGGCTTTACGACTCGGTGCTGGTGCTGGACTACAAGAGCCTGTACCCGTCGATCATCCGGACCTTTCTCATCGACCCGGTCGGGCTGATCGAAGGCCTACGCCAGCCTGACGACGCACATTCGGTCGAGGGCTTTCGCGGTg                                                       >  2:339287/1‑145 (MQ=255)                                                                                                        ctgtACGACGCGGTGCTGGTGCTGGACTACAAGAGCCTGTACCCGTCGATCATCCGCTCCTTTCTCATCGACCCGGTCGGGCTGATGGAAGGCCTACGCCAGCCTGACGACGCACATTCGGGCGAGGGCTTTCGCGGTGGGCGGTTTTc                                             <  2:310164/146‑1 (MQ=255)                                                                                                         tttACGACTCGGTGCTGGTGCTGGACTACAAGAGCCTGTACCCGTCGATCATCCGGACCTTTCTCATCGACCCGGTCGGGCTGATCGAAGGCCTACGCCAGCCTGACGACGCACATTCGGTCGAGGGCTTTCGCGGTGGGCGGTTTTCa                                            >  2:359678/1‑149 (MQ=255)                                                                                                           taggtcTCGGTTCTGGTGCTGGACTAGAAGAGCCTGTACCCGTCGATCATCCGGACCTTTCTCATCGTCCCGGTCGGGCTTATCGAAGGCCTACGCCAGCCTGACGACGCAGATTCGGTCGAGGGCTTTCGCGGTGGGCGGTTTTc                                             <  1:346671/141‑1 (MQ=255)                                                                                                           tACGACTCGGTGCTGGTGCTGGACTACAAGAGCCTGTACCCGTCGATCATCCGGACCTTTCTCATCGACCCGGTCGGGCTGATCGAAGGCCTACGCCAGCCTGACGACGCACATTCGGTCGAGGGCTTTCGCGGTGGGCGGTTTTCa                                            <  1:363727/147‑1 (MQ=255)                                                                                                           tACGACTCGGTGCTGGTGCTGGACTACAAGAGCCTGTACCCGTCGATCATCCGGACCTTTCTCATCGACCCGGTCGGGCTGATCGAAGGCCTACGCCAGCCTGACGACGCACATTCGGTCGAGGGCTTTCGCGGTGGGCGGTTTTCACg                                          >  3:52376/1‑149 (MQ=255)                                                                                                            aCGACTCGGTGCTGGTGCTGGACTACAAGAGCCTGTACCCGTCGATCATCCGGACCTTTCTCATCGACCCGGTCGGGCTGATCGAAGGCCTACGCCAGCCTGACGACGCACATTCGGTCGAGGGCTTTCGCGGTGGGCGGTTTTCACg                                          <  3:337199/148‑1 (MQ=255)                                                                                                                    gtgctggtgctgGACTACAAGAGCCTGTACCCGTCGATCATCCGGACCTTTCTCATCGACCCGGTCGGGCTGATCGAAGGCCTACGCCAGCCTGACGACGCACATTCGGTCGAGGGCTTTCGCGGTGGGCGGTTTTCACGCACACAGCa                                 >  3:336374/1‑149 (MQ=255)                                                                                                                      gctggtgctggACTACAAGAGCCTGTACCCGTCGATCATCCGGACCTTTCTCATCGACCCGGTCGGGCTGATCGAAGGCCTACGCCAGCCTGACGACGCACATTCGGTCGAGGGCTTTCGCGGTGGGCGGTTTTCACGCACACAGCAct                               >  4:244492/1‑149 (MQ=255)                                                                                                                               ggACTACAAGAGCCTGTACCCGTCGATCATCCGGACCTTTCTCATCGACCCGGTCGGGCTGATCGAAGGCCTACGCCAGCCTGACGACGCACATTCGGTCGAGGGCTTTCGCGGTGGGCGGTTTTCACGCACACAGCACTGCCTgccag                      >  5:157650/1‑149 (MQ=255)                                                                                                                                   tACAAGAGCCTGTACCCGTCGATCATCCGGACCTTTCTCATCGACCCGGTCGGGCTGATCGAAGGCCTACGCCAGCCTGACGACGCACATTCGGTCGAGGGCTTTCGCGGTGGGCGGTTTTCACGCACACAGCACTGCCTGCCAGCCAt                  >  5:179282/1‑149 (MQ=255)                                                                                                                                   tACAAGAGCCTGTACCCGTCGATCATCCGGACCTTTCTCATCGACCCGGTCGGGCTGATCGAAGGCCTACGCCAGCCTGACGACGCACATTCGGTCGAGGGCTTTCGCGGTGGGCGGTTTTCACGCACACAGCACTGCCTGCCAGCCAt                  >  4:343482/1‑149 (MQ=255)                                                                                                                                   tACAAGAGCCTGTACCCGTCGATCATCCGGACCTTTCTCATCGACCCGGTCGGGCTGATCGAAGGCCTACGCCAGCCTGACGACGCACATTCGGTCGAGGGCTTTCGCGGTGGGCGGTTTTCACGCACACAGCACTGCCTGCCAGCCAt                  >  6:68617/1‑149 (MQ=255)                                                                                                                                   tACAAGAGCCTGTACCCGTCGATCATCCGGACCTTTCTCATCGACCCGGTCGGGCTGATCGAAGGCCTACGCCAGCCTGACGACGCACATTCGGTCGAGGGCTGTCGCGGTGGGCGGTTTTCACGCCCACAGCACTGCCTGCCAGCCAt                  >  8:129235/1‑149 (MQ=255)                                                                                                                                      catctccTGTACCCGGCGATCATCCGGACCTTTCTCATCGACCCGGTCGGGCTGATCGAAGGCCTACGCCAGCCTGACGACGCACATTCGGTCGAGGGCTTTCGCGGTGGGCGGTTTTCACGCACACAGCACTGCCTGCCAGCCAtcgt               <  1:292589/144‑1 (MQ=255)                                                                                                                                      aaGAGCCTGTACCCGTCGATCATCCGGACCTTTCTCATCGACCCGGTCGGGCTGATCGAAGGCCTACGCCAGCCTGACGACGCACATTCGGTCGAGGGCTTTCGCGGTGGGCGGTTTTCACGCACACAGCACTGCCTGCCAGCCAtcgt               <  6:157650/149‑1 (MQ=255)                                                                                                                                        gagCCTGTACCCGTCGATCATCCGGACCTTTCTCATCGACCCGGTCGGGCTGATCGAAGGCCTACGCCAGCCTGACGACGCACATTCGGTCGAGGGCTTTCGCGGTGGGCGGTTTTCACGCACACAGCACTGCCTGCCAGCCAtcgtc              >  3:344022/1‑148 (MQ=255)                                                                                                                                            cTGTACCCGTCGATCATCCGGACCTTTCTCATCGACCCGGTCGGGCTGATCGAAGGCCTACGCCAGCCTGACGACGCACATTCGGTCGAGGGCTTTCGCGGTGGGCGGTTTTCACGCACACAGCACTGCCTGCCAGCCATCGTCGAACg         >  7:239855/1‑149 (MQ=255)                                                                                                                                             tGTACCCGTCGATCATCCGGACCTTTCTCATCGACCCGGTCGGGCTGATCGAAGGCCTACGCCAGCCTGACGACGCACATTCGGTCGAGGGCTTTCGCgg                                                         >  4:124693/1‑100 (MQ=255)                                                                                                                                             tGTACCCGTCGATCATCCGGACCTTTCTCATCGACCCGGTCGGGCTGATCGAAGGCCTACGCCAGCCTGACGACGCACATTCGGTCGAGGGCTTTCGCgg                                                         <  3:124693/100‑1 (MQ=255)                                                                                                                                               tACCCGTCGATCATCCGGACCTTTCTCATCGACCCGGTCGGGCTGATCGAAGGCCTACGCCAGCCTGACGACGCACATTCGGTCGAGGGCTTTCGCGGTGGGCGGTTTTCACGCACACAGCACTGCCTGCCAGCCATCGTCGAACggg       <  4:52376/148‑1 (MQ=255)                                                                                                                                                 cccGTCGATCATCCGGACCTTTCTCATCGACCCGGTCGGGCTGATCGAAGGCCTACGCCAGCCTGACGACGCACATTCGGTCGAGGGCTTTCGCGGTGGGCGGTTTTCACGCACACAGCACTGCCTGCCAGCCATCGTCGAACGGgtg     <  5:115418/148‑1 (MQ=255)                                                                                                                                                  ccGTCGATCATCCGGACCTTTCTCATCGACCCGGTCGGGCTGATCGAAGGCCTACGCCAGCCTGACGACGCACATTCGGTCGAGGGCTTTCGCGGTGGGCGGTTTTCACGCACACAGCACTGCCTGCCAGCCATCGTCGAACGGGtgtg   >  8:6819/1‑149 (MQ=255)                                                                                                                                                    gTCGATCATCCGGACCTTTCTCATCGACCCGGTCGGGCTGATCGAAGGCCTACGCCAGCCTGACGACGCACATTCGGTCGAGGGCTTTCGCGGTGGGCGGTTTTCACGCACACAGCACTGCCTGCCAGCCATCGTCGAACGGgtgt    >  1:383455/1‑146 (MQ=255)                                                                                                                                                    gTCGATCATCCGGACCTTTCTCATCGACCCGGTCGGGCTGATCGAAGGCCTACGCCAGCCTGACGACGCACATTCGGTCGAGGGCTTTCGCGGTGGGCGGTTTTCACGCACACAGCACTGCCTGCCAGCCATCGTCGAACGGgtgt    <  2:383455/146‑1 (MQ=255)                                                                                                                                                    gTCGATCATCCGGACCTTTCTCATCGACCCGGTCGGGCTGATCGAAGGCCTACGCCAGCCTGACGACGCACATTCGGTCGAGGGCTTTCGCGGTGGGCGGTTTTCACGCACACAGCACTGCCTGCCAGCCATCGTCGAACGGGTGTgg  >  3:163509/1‑148 (MQ=255)                                                                                                                                                     |                                                                                                                                                   TACATTCCACAGATGCACCGCCTTGGCTTTGTCGCGCCCAGCCTTGGCAGCCGGCCGGACGAAGCCAGCCC‑CGGCGGGTTTGTCATGGATTCGCGGCCAGGGCTTTACGACTCGGTGCTGGTGCTGGACTACAAGAGCCTGTACCCGTCGATCATCCGGACCTTTCTCATCGACCCGGTCGGGCTGATCGAAGGCCTACGCCAGCCTGACGACGCACATTCGGTCGAGGGCTTTCGCGGTGGGCGGTTTTCACGCACACAGCACTGCCTGCCAGCCATCGTCGAACGGGTGTGG  >  NC_002947/2731795‑2732088

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.