New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3543866 =	49 (0.790)	3 (0.050)	3/254	NT	5.6%	coding (1569/2607 nt)	PP_3130	hypothetical protein
	?	NC_002947	3543902 =	55 (0.930)					coding (1533/2607 nt)	PP_3130	hypothetical protein

CAGCGGTTTGCCGACGACCTGGGCGGCAGCAATCCAGTCGATCATGCCGTCGCTGGTCAGCGGGTTCTTCTCCAGTTGGCCTGTGTCGCCGTAGCTGTGGGCGTCGATGACATCGCCAACGCTCAATGCCGGCAGTGCGCTAAGCCCATTACCGCCCCAGGTGCTGGTGGTAGCAATGGGGACTTTCACGCCCACGCTGCGCAAGTGGGCGATCATGTCGGCATTGAAGCGTTGTTCCAGCTCGTTGAGCAACAGCTTCGACGGCCCATGCTCCCAGGCACGCCAGGTCAGG  >  NC_002947/3543722‑3544013                                                                                                                                                 |                                                                                                                                                    gcctttgccaaacagtttgacctacccgccgacctgacctggcgtgcctgggagcatgggccgtcgaagctgttgctcaacgagctggaacaacgcttcaatgccgacatgatcgcccacttgcgcagcgtgggcgtgaaagtcCCCAt                                                                                                                                                 <  5:254345‑M1/5‑1 (MQ=255)            cgacgaCCTGGGCGGCAGCAATCCAGTCGATCATGCCGTCGCTGGTCAGCGGGTTCTTCTCCAGTTGGCCTGTGTCGCCGTAGCTGTGGGCGTCGATGACATCGCCAACGCTCAATGCCGGCAGTGCGCTAAGCCCATTACCGCCCCAg                                                                                                                                      >  1:329728/1‑149 (MQ=255)                gacCTGGGCGGCAGCAATCCAGTCGATCATGCCGTCGCTGGTCAGCGGGTTCTTCTCCAGTTGGCCTGTGTCGCCGTAGCTGTGGGCGTCGATGACATCGCTAACGCTCAATGCCGGCAGTGCGCTAAGCCCATTACCGCCCCAGGTGc                                                                                                                                  <  7:236288/149‑1 (MQ=255)                gacCTGGGCGGCAGCAATCCAGTCGATCATGCCGTCGCTGGTCAGCGGGTTCTTCTCCAGTTGGCCTGTGTCGCCGTAGCTGTGGGCGTCGATGACATCGCCAACGCTCAATGCCGGCAGTGCGCTAAGCCCATTACCGCCCCAGGTGc                                                                                                                                  >  3:128618/1‑149 (MQ=255)                  ccTGGGCGGCAGCAATCCAGTCGATCATGCCGTCGCTGGTCAGCGGGTTCTTCTCCAGTTGGCCTGTGTCGCCGTAGCTGTGGGCGTCGATGACATCGCCAACGCTCAATGCCGGCAGTGCGCTAAGCCCATTACCGCCCCAGGTGCtg                                                                                                                                >  8:10562/1‑149 (MQ=255)                                aTCCAGTCGATCATGCCGTCGCTGGTCAGCGGGTTCTTCTCCAGTTGGCCTGTGTCGCCGTAGCTGTGGGCGTCGATGACATCGCCAACCCTCAATGCCGGCAGTGCGCTAAGCCCATTACCGCCCCAGGTGCTGGTGGTAGCAATggg                                                                                                                  >  7:99763/1‑149 (MQ=255)                                 tCCAGTCGATCATGCCGTCGCTGGTCAGCGGGTTCTTCTCCAGTTGGCCTGTGTCGCCGTAGCTGTGGGCGTCGATGACATCGCCAACGCTCAATGCCGGCAGTGCGCTAAGCCCATTACCGCCCCAGGTGCTGGTGGTAGCAATgggg                                                                                                                 <  5:373716/149‑1 (MQ=255)                                 tCCAGTCGATCATGCCGTCGCTGGTCAGCGGGTTCTTCTCCAGTTGGCCTGTGTCGCCGTAGCTGTGGGCGTCGATGACATCGCCAACGCTCAATGCCGGCAGTGCGCTAAGCCCATTACCGCCCCAGGTGCTGGTGGTAGCAATggg                                                                                                                  >  4:1512/1‑148 (MQ=255)                                 tCCAGTCGATCATGCCGTCGCTGGTCAGCGGGTTCTTCTCCAGTTGGCCTGTGTCGCCGTAGCTGTGGGCGTCGATGACATCGCCAACGCTCAATGCCGGCAGTGCGCTAAGCCCATTACCGCCCCAGGTGCTGGTGGTAGCAATggg                                                                                                                  >  3:239921/1‑148 (MQ=255)                                  ctgtgctggcgtgcctgggagcttgggccgtcgaagctgttgcgcatcgtgctggaacaacgcttgaatgccgacatgatcgcccacttgcgcagcgtgggcgtgaaagtcCCCATTACCGGCCCAGGTGCTGGTGGTAGCAATGGGGa                                                                                                                >  8:75412‑M1/112‑149 (MQ=255)                                   cAGTCGATCATGCCGTCGCTGGTCAGCGGGTTCTTCTCCAGTTGGCCTGTGTCGCCGTAGCTGTGGGCGTCGATGACATCGCCAACGCTCAATGCCGGCAGTGCGCTAAGCCCATTACCGCCCCAGGTGCTGGTGGTAGCAATGGGGa                                                                                                                <  6:357857/148‑1 (MQ=255)                                        gATCATGCCGTCGCTGGTCAGCGGGTTCTTCTCCAGTTGGCCTGTGTCGCCGTAGCTGTGGGCGTCGATGACATCGCCAACGCTCAATGCCGGCAGTGCGCTAAGCCCATTACCGCCCCAGGTGCTGGTGGTAGCAATGGGGACTTTc                                                                                                           >  7:152414/1‑148 (MQ=255)                                        gATCATGCCGTCGCTGGTCAGCGGGTTCTTCTCCAGTTGGCCTGTGTCGCCGTAGCTGTGGGCGTCGATGACATCGCCAACGCTCAATGCCGGCAGTGCGCTAAGCCCATTACCGCCCCAGGTGCTGGTGGTAGCAATGGGGACTTTc                                                                                                           <  8:152414/148‑1 (MQ=255)                                               ccGTCGCTGGTCAGCGGGTTCTTCTCCAGTTGGCCTGTGTCGCCGTAGCTGTGGGCGTCGATGACATCGCCAACGCTCAATGCCGGCAGTGCGCTAAGCCCATTACCGCCCCAGGTGCTGGTGGTAGCAATGGGGACTTTCACGCCCa                                                                                                    <  3:1512/148‑1 (MQ=255)                                               ccGTCGCTGGTCAGCGGGTTCTTCTCCAGTTGGCCTGTGTCGCCGTAGCTGTGGGCGTCGATGACATCGCCAACGCTCAATGCCGGCAGTGCGCTAAGCCCATTACCGCCCCAGGTGCTGGTGGTAGCAATGGGGACTTTCACGCCCAc                                                                                                   >  6:80834/1‑149 (MQ=255)                                                    gCTGGTCAGCGGGTTCTTCTCCAGTTGGCCTGTGTCGCCGTAGCTGTGGGCGTCGATGACATCGCCAACGCTCAATGCCGGCAGTGCGCTAAGCCCATTACCGCCCCAGGTGCTGGTGGTAGCAATGGGGACTTTCACGCCCACGCTgc                                                                                              >  2:284708/1‑149 (MQ=255)                                                     cTGGTCAGCGGGTTCTTCTCCAGTTGGCCTGTGTCGCCGTAGATGTGGGCGTCGATGACATCGCCAACGCTCAATGCCGGCAGTGCGCTAAGCCCATTACAGCCCCAGGTGCTGGTGGTAGCAATGGGGACTTTCACGCCCACGCTgc                                                                                              >  3:326860/1‑148 (MQ=255)                                                        gTCAGCGGGTTCTTCTCCAGTTGGCCTGTGTCGCCGTAGCTGTGGGCGTCGATGACATCGCCAACGCTCAATGCCGGCAGTGCGCTAAGCCCATTACCGCCCCAGGTGCTGGTGGTAGCAATGGGGACTTTCACGCCAACGCTgcgc                                                                                            >  8:335408/1‑147 (MQ=255)                                                         tCAGCGGGTTCTTCTCCAGTTGGCCTGTGTCGCCGTAGCTGTGGGCGTCGATGACATCGCCAACGCTCAATGCCGGCAGTGCGCTAAGCCCATTACCGCCCCAGGTGCTGGTGGTAGCAATGGGGACTTTCACGCCCACGCTGCGCAAg                                                                                         >  2:136536/1‑149 (MQ=255)                                                                   cttctCCAGTTGGCCTGTGTCGCCGTAGCTGTGGGCGTCGATGACATCGCCAACGCTCAATGCCGGCAGTGCGCTAAGCCCATTACCGCCCCAGGTGCTGGTGGTAGCAATGGGGACTTTCACGCCCACGCTGCGCAAGTGGGCGATc                                                                                <  2:329728/148‑1 (MQ=255)                                                                   cttctCCAGTTGGCCTGTGTCGCCGTAGCTGTGGGCGTCGATGACATCGCCAACGCTCAATGCCGGCAGTGCGCTAAGCCCATTACCGCCCCAGGTGCTGGTGGTAGCAATGGGGACTTTCACGCCCACGCTGCGCAAGTGGGCGATc                                                                                <  7:193969/148‑1 (MQ=255)                                                                      ctcCAGTTGGCCTGTGTCGCCGTAGCTGTGGGCGTCGATGACATCGCCAACGCTCAATGCCGGCAGTGCGCTAAGCCCATTACCGCCCCAGGTGCTGGTGGTAGc                                                                                                                        <  2:132624/105‑1 (MQ=255)                                                                      ctcCAGTTGGCCTGTGTCGCCGTAGCTGTGGGCGTCGATGACATCGCCAACGCTCAATGCCGGCAGTGCGCTAAGCCCATTACCGCCCCAGGTGCTGGTGGTAGc                                                                                                                        >  1:132624/1‑105 (MQ=255)                                                                       tcCAGTTGGCCTGTGTCGCCGTAGCTGTGGGCGTCGATGACATCGCCAACGCTCAATGCCGGCAGTGCGCTAAGCCCATTACCGCCCCAGGTGCTGGTGGTAGCAATGGGGACTTTCACGCCCACGCTGCGCAAGTGGGCGATCATGTc                                                                           >  6:254345/1‑149 (MQ=255)                                                                        ccAGTTGGCCTGTGTCGCCGTAGCTGTGGGCGTCGATGACATCGCCAACGCTCAATGCCGGCAGTGCGCTAAGCCCATTACCGCCCCAGGTGCTGGTGGTAGCAATGGGGACTTTCACGCCCACGCTGCGCAAGTGGGCGATCATGTCg                                                                          >  2:389855/1‑149 (MQ=255)                                                                         ccgTTGGCCTGTGTCGCCGTAGCTGTGGGCGTCGATGACATCGCCAACGCTCAATGCCGGCAGTGCGCTAAGCCCATTACCGCCCCAGGTGCTGGTGGTAGCAATGGGGACTTTCACGCCCACGCTGCGCAAGTGGGCGATCATGTc                                                                           <  4:226682/145‑1 (MQ=255)                                                                                ccTGTGTCGCCGTAGCTGTGGGCGTCGATGACATCGCCAACGCTCAATGCCGGCAGTGCGCTAAGCCCATTACCGCCCCAGGTGCTGGTGGTAGCAATGGGGACTTTCACGCCCACGCTGCGCAAGTGGGCGATCATGTCGGCATTGaa                                                                  <  7:10562/149‑1 (MQ=255)                                                                                 cTGTGTCGCCGTAGCTGTGGGCGTCGATGACATCGCCAACGCTCAATGCCGGCAGTGCGCTAAGCCCATTACCGCCCCAGGTGCTGGTGGTAGCAATGGGGACTTTCACGCCCACGCTGCGCAAGTGGGCGATCATGTCGGCATTGAAg                                                                 >  7:294712/1‑149 (MQ=255)                                                                                 cTGTGTCGCCGTAGCTGTGGGCGTCGATGACATCGCCAACGCTCAATGCCGGCAGTGCGCTAAGCCCATTACCGCCCCAGGTGCTGGTGGTAGCAATGGGGACTTTCACGCCCACGCTGCGCAAGTGGGCGATCATGTCGGCATTGAAg                                                                 >  7:336493/1‑149 (MQ=255)                                                                                          acaacgcttcaatgccgacatgatcgcccacttgcgcagcgtgggcgtgaaagtcCCCATTACCGCCCCAGGTGCTGGTGGTAGCAATGGGGACttt                                                                                                            >  3:269572‑M1/56‑97 (MQ=255)                                                                                          acaacgcttcaatgccgacatgatcgcccacttgcgcagcgtgggcgtgaaagtcCCCATTACCGCCCCAGGTGCTGGTGGTAGCAATGGGGACttt                                                                                                            <  4:269572‑M1/42‑1 (MQ=255)                                                                                                  tgGGCGTCGATGACATCGCCTACGGTCAATGCCGGCAGTGCTCTAAGCCCATTACCGCCGCAGGTTCTGGTGGTAGCATTGGGTACTTTCACGCCGACGCTGCGCAAGTGGGCGTTCATGTCGGCATTGAAGCGTTGTTCCAGCTCttt                                                <  8:99763/149‑1 (MQ=255)                                                                                                  tgGGCGTCGATGACATCGCCAACGCTCAATGCCGGCAGTGCGCTAAGCCCATTACCGCCCCAGGTGCTGGTGGTAGCAATGGGGACTTTCACGCCCACGCTGCGCAAGTGGGCGATCATGTCGGCATTGAAGCGTTGTTCCAGCTCGtt                                                >  6:169733/1‑149 (MQ=255)                                                                                                          gATGACATCGCCAACGCTCAATGCCGGCAGTGCGCTAAGCCCATTACCGCCCCAGGTGCTGGTGGTAGCAATGGGGACTTTCACGCCCACGCTGCGCAAGTGGGCGATCATGTCGGCATTGAAGCGATCTTCCAGCTCGTTGAGCAACa                                        >  2:111131/1‑149 (MQ=255)                                                                                                             gACATCGCCAACGCTCAATGCCGGCAGTGCGCTAAGCCCATTACCGCCCCAGGTGCTGGTGGTAGCAATGGGGACTTTCACGCCCACGCTGCGCAAGTGGGCGATCATGTCGGCATTGAAGCGTTGTTCCAGCTCGTTGAGCAACAGCt                                     >  4:245195/1‑149 (MQ=255)                                                                                                              aCATCGCCAACGCTCAATGCCGGCAGTGCGCTAAGCCCATTACCGCCCCAGGTGCTGGTGGTAGCAATGGGGACTTTCACGCCCACGCTGCGCAAGTGGGCGATCATGTCGGCATTGAAGCGTTGTTCCAGCTCGTTGAGCAACAGCtt                                    >  1:247115/1‑149 (MQ=255)                                                                                                                aTCGCCAACGCTCAATGCCGGCAGTGCGCTAAGCCCATTACCGCCCCAGGTGCTGGTGGTAGCAATGGGGACTTTCACGCCCACGCTGCGCAAGTGGGCGATCATGTCGGCATTGAAGCGTTGTTCCa                                                       >  7:180688/1‑128 (MQ=255)                                                                                                                aTCGCCAACGCTCAATGCCGGCAGTGCGCTAAGCCCATTACCGCCCCAGGTGCTGGTGGTAGCAATGGGGACTTTCACGCCCACGCTGCGCAAGTGGGCGATCATGTCGGCATTGAAGCGTTGTTCCa                                                       <  8:180688/128‑1 (MQ=255)                                                                                                                 tCGCCAACGCTCAATGCCGGCAGTGCGCTAAGCCCATTACCGCCCCAGGTGCTGGTGGTAGCAATGGGGACTTTCACGCCCACGCTGCGCAAGTGGGCGATCATGTCGGCATTGAAGCGTTGTTCCAGCTCGTTGAGCAACAGCTTCGa                                 <  1:136536/149‑1 (MQ=255)                                                                                                                   gCCAACGCTCAATGCCGGCAGTGCGCTAAGCCCATTACCGCCCCAGGTGCTGGTGGTAGCAATGGGGACTTTCACGCCCACGCTGCGCAAGTGGGCGATTATGTCGGCATTGAAGCGTTGTTCCAGCTCGTTGAGCAACAGCTTCGACg                               <  1:284708/149‑1 (MQ=255)                                                                                                                   gCCAACGCTCAATGCCGGCAGTGCGCTAAGCCCATTACCGCCCCAGGTGCTGGTGGTAGCAATGGGGACTTTCACGCCCACGCTGCGCAAGTGGGCGATCATGTCGGCATTGAAGCGTTGTTCCAGCTCGTTGAGCAACAGCTTCGACg                               >  5:237900/1‑149 (MQ=255)                                                                                                                   gCCAACGCTCAATGCCGGCAGTGCGCTAAGCCCATTACCGCCCCAGGTGCTGGTGGTAGCAATGGGGACTTTCACGCCCACGCTGCGCAAGTGGGCGATCATGTCGGCATTGAAGCGTTGTTCCAGCTCGTTGAGCAACAGCTTCGACg                               <  8:294712/149‑1 (MQ=255)                                                                                                                      aaCGCTCAATGCCGGCAGTGCGCTAAGCCCATTACCGCCCCAGGTGCTGGTGGTAGCAATGGGGACTTTCACGCCCACGCTGCGCAAGTGGGCGATCATGTCGGCATTGAAGCGTTGTTCCAGCTCGTTGAGCAACAGCTTCGACGGcc                            >  1:163204/1‑149 (MQ=255)                                                                                                                      aaCGCTCAATGCCGGCAGTGCGCTAAGCCCATTACCGCCCCAGGTGCTGGTGGTAGCAATGGGGACTTTCACGCCCACGCTGCGCAAGTGGGCGATCATGTCGGCATTGAAGCGTTGTTCCAGCTCGTTGAGCAACAGCTTCGACGGcc                            <  8:336493/149‑1 (MQ=255)                                                                                                                      aaCGCTCAATGCCGGCAGTGCGCTAAGCCCATTACCGCCCCAGGTGCTGGTGGTAGAAGTGTGGACTTTCACGCCCACGCTGCGCAAGTGGGCGATCATGTCGGCATTGAAGCGTTGTTCCAGCTCGTTGAGCAACATCTTCGACGGcc                            <  6:108587/149‑1 (MQ=255)                                                                                                                          cTCAATGCCGGCAGTGCGCTAAGCCCATTACCGCCCCAGGTGCTGGTGGTAGCAATGGGGACTTTCACGCCCACGCTGCGCAAGTGGGCGATCATGTCGGCATTGAAGCGTTGTTCCAGCTCGTTGAGCAACAGCTTCGACGGCCCAt                         >  1:249723/1‑148 (MQ=255)                                                                                                                            cAATGCCGGCAGTGCGCTAAGCCCATTACCGCCCCAGGTGCTGGTGGTAGCAATGGGGACttt                                                                                                            <  7:313124/63‑1 (MQ=255)                                                                                                                            cAATGCCGGCAGTGCGCTAAGCCCATTACCGCCCCAGGTGCTGGTGGTAGCAATGGGGACttt                                                                                                            >  8:313124/1‑63 (MQ=255)                                                                                                                             aaTGCCGGCAGTGCGCTAAGCCCATTACCGCCCCAGGTGCTGGTGGTAGCAATGGGGACTTTCACGCCCACGCTGCGCAAGTGGGCGATCATGTCGGCATTGAAGCGTTGTTCCAGCTCGTTGAGCAACAGCTTCGACGGCCCATGCTc                     >  1:95213/1‑149 (MQ=255)                                                                                                                              aTGCCGGCAGTGCGCTAAGCCCATTACCGCCCCAGGTGCTGGTGGTAGCAATGGGGACTTTCACGCCCACGCTGCGCAAGTGGGCGATCATGTCGGCAATGAAGCGTTGTTCCAGCTCGTTAAGCAACAGCTTCGACGGCCCATGCTcc                    >  1:323499/1‑149 (MQ=255)                                                                                                                                 ccGGCAGTGCGCTAAGCCCATTACCGCCCCAGGTGCTGGTGGTAGCAATGGGGACTTTCACGCCCACGCTGCGCAAGTGGGCGATCATGTCGGCATTGAAGCGTTGTTCCAGCTCGTTGAGCAACAGCTTCGACGGCCCATGCTCCCAg                 >  6:285800/1‑149 (MQ=255)                                                                                                                                 ccGGCAGTGCGATCAGCCCATTACCGCCCCAGGTGCTGGTGGTAGCAATGGGGACTTTCACGCCCACGCTGCGCAAGTGGGCGATCATGTCGGCATTTAAGCGTTGTTCCAGCTCTTTGAGCAACTGCTTCGACGGCCCATGCTCCCa                  <  8:340276/148‑1 (MQ=255)                                                                                                                                           gcTAAGCCCATTACCGCCCCAGGTGCTGGTGGTAGCAATGGGGACTTTCACGCCCACGCTGCGCAAGTGGGCGATCATGTCGGCATTGAAGCGTTGTTCCAGCTCGTTGAGCAACAGCTTCGACGGCCCATGCTCCCAGGCACGCcagg       <  1:389855/149‑1 (MQ=255)                                                                                                                                               aGCCCATTACCGCCCCATGTGCTGGTGGTAGCAATGGGGACTTTCACGCCCACGCTGCGCAAGTGGGCGATCATGTCGGCATTGAAGCGTTGTTCCAGCTCGTTGAGCAACAGCTTCGACGGCCCATGCTCCCAGGCACGCcaggtca    <  2:249723/148‑1 (MQ=255)                                                                                                                                               aGCCCATTACCGCCCCAGGTGCTGGTGGTAGCAATGGGGACTTTCACGCCCACGCTGCGCAAGTGGGCGATCATGTCGGCATTGAAGCGTTGTTCCAGCTCGTTGAGCAACAGCTTCGACGGCCCATGCTCCCAGGCACGCcaggtc     <  3:245195/147‑1 (MQ=255)                                                                                                                                                gCCCATTACCGCCCCAGGTGCTGGTGGTAGCAATGGGGACTTTCACGCCCACGCTGCGCAAGTGGGCGATCATGTCGGCATTGAAGCGTTGTTCCAGCTCGTTGAGCAACAGCTTCGACGGCCCATGCTCCCAGGCACGCcaggtcagg  >  4:39455/1‑149 (MQ=255)                                                                                                                                                gCCCATTACCGCCCCAGGTGCTGGTGGTAGCAATGGGGACTTTCACGCCCACGCTGCGCAAGTGGGCGATCATGTCGGCATTGAAGCGTTGTTCCAGCTCGTTGAGCAACAGCTTCGACGGCCCATGCTCCCAGGCACGCcaggtcagg  >  7:255809/1‑149 (MQ=255)                                                                                                                                                 |                                                                                                                                                    CAGCGGTTTGCCGACGACCTGGGCGGCAGCAATCCAGTCGATCATGCCGTCGCTGGTCAGCGGGTTCTTCTCCAGTTGGCCTGTGTCGCCGTAGCTGTGGGCGTCGATGACATCGCCAACGCTCAATGCCGGCAGTGCGCTAAGCCCATTACCGCCCCAGGTGCTGGTGGTAGCAATGGGGACTTTCACGCCCACGCTGCGCAAGTGGGCGATCATGTCGGCATTGAAGCGTTGTTCCAGCTCGTTGAGCAACAGCTTCGACGGCCCATGCTCCCAGGCACGCCAGGTCAGG  >  NC_002947/3543722‑3544013

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.