New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3554817 =	49 (0.790)	3 (0.050)	3/254	NT	6.4%	coding (433/1203 nt)	PP_3139	group 1 family glycosyl transferase
	?	NC_002947	3554849 =	41 (0.690)					coding (465/1203 nt)	PP_3139	group 1 family glycosyl transferase

GCCGACCGTGCCTGGCCCTACCACCTGGTCTACCTGGCCGAGGCCTGCCAGGTGCTGCAGTGGTTGCAGGCAGGGGAGGCGACACATGTGCACGCGCATTTCGGCACCAACTCTACTGAAGTGGTCATGCTGGCCAACGCCCTGGGCGGGCCGGCATACAGCTTTACCGTGCACGGCCCTGAAGAATTCGACAAACCACAGTTCCTGCACTTGGGTGAGAAAGTACGGCGCGCCGCCTTTGTCGCGGCGGTGAGCTCGTACGGGCGCAGCCAGTTGTACCGTTGGGTGG  >  NC_002947/3554670‑3554958                                                                                                                                                    |                                                                                                                                              gCCGACCGTGCCTGGCCCTACCACCTGGTCTACCTGGCCGAGGCCTGCCAGGTGCTGCAGTGGTTGCAGGCAGGGGAGGCGACACATGTGCACGCGCATTTCGGCACCAACTCTACTGAAGTGGTCATGCTGGCCAACGCCCTgggcgg                                                                                                                                              <  3:305811/149‑1 (MQ=255) gCCGACCGTGCCTGGCCCTACCACCTGGTCTACCTGGCCGAGGCCTGCCAGGTGCTGCAGTGGTTGCAGGCAGGGGAGGCGACACATGTGCACGCGCATTTCGGCACCAACTCTACTGAAGTGGTCATGCTGGCCAACGCCCTgggcgg                                                                                                                                              <  2:44700/149‑1 (MQ=255) caatgcaccaccttcaccttgccccactgctcgggcgccacccaacggtacaactggctgcgcccgtacgagctcaccgccgcgacaaaggcggcgcgccgtactttctcacccaagtgcaggaactgtggtttgtcgaattcttcagg                                                                                                                                              <  6:15690‑M1/2‑1 (MQ=255)  aatgcaccaccttcaccttgccccactgctcgggcgccacccaacggtacaactggctgcgcccgtacgagctcaccgccgcgacaaaggcggcgcgccgtactttctcacccaagtgcaggaactgtggtttgtcgaattcttcaggg                                                                                                                                             <  2:339643‑M1/3‑1 (MQ=255)    tgctcgaccttcaccttgccccactgctcgcgcgcaacccaacggtacaactggctgcgcccgtacgagctcaccgccgcgacaaaggcggctcgccgtactttctcacccaagtgcaggaactgtggtttgtcgaattcttcaGGGcc                                                                                                                                           >  3:139098‑M1/145‑149 (MQ=255)         tGCCTGGCCCTACCACCTGGTCTACCTGGCCGAGGCCTGCCAGGTGCTGCAGTGGTTGCAGGCAGGGGAGGCGACACATGTGCACGCGCATTTCGGCACCAACTCTACTGAAGTGGTCATGCTGGCCAACGCCCTGGGCGGGCCGGCa                                                                                                                                       >  1:279775/1‑148 (MQ=255)            cTGGCCCTACCACCTGGTCTACCTGGCCGAGGCCTGCCAGGTGCTGCAGTGGTTGCAGGCAGGGGAGGCGACACATGTGCACGCGCATTTCGGCACCAACTCTACTGAAGTGGTCATGCTGGCCAACGCCCTGGGCGGGCCGGCATACa                                                                                                                                   <  2:291070/149‑1 (MQ=255)                cccTACCACCTGGTCTACCTGGCCGAGGCCTGCCAGGTGCTGCAGTGGTTGCAGGCAGGGGAGGCGACACATGTGCACGCGCATTTCGGCACCAACTCTACTGAAGTGGTCATGCTGGCCAACGCCCTGGGCGGGCCGGCATACAGCtt                                                                                                                               <  6:323214/149‑1 (MQ=255)                  cTACCACCTGGTCTACCTGGCCGAGGCCTGCCAGGTGCTGCAGTGGTTGCAGGCAGGGGAGGCGACACATGTGCACGCGCATTTCGGCACCAACTCTACTGAAGTGGTCATGCTGGCCAACGCCCTGGGCGGGCCGGCATACAGCTTTa                                                                                                                             <  5:64672/149‑1 (MQ=255)                    accaccTGGTCTACCTGGCCGAGGCCTGCCAGGTGCTGCAGTGGTTGCAGGCAGGGGAGGCGACACATGTGCACGCGCATTTCGGCACCAACTCTACTGAAGTGGTCATGCTGGCCAACGCCCTGGGCGGGCCGGCATACAGCTTTAcc                                                                                                                           >  6:151373/1‑149 (MQ=255)                        ccTGGTCTACCTGGCCGAGGCCTGCCAGGTGCTGCAGTGGTTGCAGGCAGGGGAGGCGACACATGTGCACGCGCATTTCGGCACCAACTCTACTGAAGTGGTCATGCTGGCCAACGCCCTGGGCGGGCCGGCATACAGCTTTACCGTg                                                                                                                        >  1:148594/1‑148 (MQ=255)                            cagcaCCTGGCCGAGGCCTGCCAGGTGCTGCAGTGGTTGCAGGCAGGGGAGGCGACACATGTGCACGCGCATTTCGGCACCAACTCTACTGAAGTGGTCATGCTGGCCAACGCCCTGGGCGGGCCGGCATACAGCTTTACCGTGCAc                                                                                                                     <  5:43776/143‑1 (MQ=255)                                 ccTGGCCGAGGCCTGCCAGGTGCTGCAGTGGTTGCAGGCAGGGGAGGCGACACATGTGCACGCGCATTTCGGCACCAACTCTACTGAAGTGGTCATGCTGGCCAACGCCCTGGGCGGGCCGGCATACAGCTTTACCGTGCACGGcc                                                                                                                 <  7:248774/146‑1 (MQ=255)                                  cTGGCCGAGGCCTGCCAGGTGCTGCAGTGGTTGCAGGCAGGGGAGGCGACACATGTGCACGCGCATTTCGGCACCAACTCTACTGAAGTGGTCATGCTGGCCAACGCCCTGGGCGGGCCGGCATACAGCTTTACCGTGCACGGCCCTg                                                                                                              >  8:217714/1‑148 (MQ=255)                                    cgccacccaacggtacaactcgctgcgcccgtacgagctcaccgccgcgacaaaggcggcgcgccgtactttctcacccaagtgcaggaactgtggtttgtcgaattcttcaGGGCCGGCATACAGCTTTACCGTGCACGGCCCTgaag                                                                                                           >  7:318910‑M1/113‑149 (MQ=255)                                     gCCGAGGCCTGCCAGGTGCTGCAGTGGTTGCAGGCAGGGGAGGCGACACATGTGCACGCGCATTTCGGCACCAACTCTACTGAAGTGGTCATGCTGGCCAACGCCCTGGGCGGGCTGGCATACAGCTTTACCGTGCACGGCCCTgaa                                                                                                            <  5:130940/147‑1 (MQ=255)                                     gCCGAGGCCTGCCAGGTGCTGCAGTGGTTGCAGGCAGGGGAGGCGACACATGTGCACGCGCATTTCGGCACCAACTCTACTGAAGTGGTCATGCTGGCCAACGCCCTGGGCGGGCCGGCATACAGCTTTACCGTGCACGGCCCTgaag                                                                                                           >  3:240253/1‑148 (MQ=255)                                       cGAGGCCTGCCAGGTGCTGCAGTGGTTGCAGGCAGGGGAGGCGACACATGTGCACGCGCATTTCGGCACCAACTCTACTGAAGTGGTCATGCTGGCCAACGCCCTGGGCGGGCCGGCATACAGCTTTACCGTGCACGGCCCTGAAGAAt                                                                                                        <  3:185909/149‑1 (MQ=255)                                        gAGGCCTGCCAGGTGCTGCAGTGGTTGCAGGCAGGGGAGGCGACACATGTGCACGCGCATTTCGGCACCAACTCTACTGAAGTGGTCATGCTGGCCAACGCCCTGGGCGGGCCGGCATACAGCTTTACCGTGCACGGCCCTGAAGAAtt                                                                                                       <  2:148594/149‑1 (MQ=255)                                         aGGCCTGCCAGGTGCTGCAGTGGTTGCAGGCAGGGGAGGCGACACATGTGCACGCGCATTTCGGCACCAACTCTACTGAAGTGGTCATGCTGGCCAACGCCCTGGGCGGGCCGGCATACAGCTTTACCGTGCACGGCCCTGAAGAATTc                                                                                                      <  3:186302/149‑1 (MQ=255)                                           gCCTGCCAGGTGCTGCAGTGGTTGCAGGCAGGGGAGGCGACACATGTGCACGCGCATTTCGGCACCAACTCTACTGAAGTGGTCATGCTGGCCAACGCCCTGGGCGGGCCGGCATACAGCTTTACCGTGCACGGCCCTGAAGAATTCGa                                                                                                    <  4:177965/149‑1 (MQ=255)                                             cTGCCAGGTGCTGCAGTGGTTGCAGGCAGGGGAGGCGACACATGTGCCCGCGCTTTTCGGCAGCAAGTCTTCTCAAGTGGTCATGCTGGCCAACGCCCTCGGCGGGCCGGAATACAGCTTTACCGTGCACCGCACTGAAGAATTCGAc                                                                                                   >  1:242522/1‑148 (MQ=255)                                                ccAGGTGCTGCAGTGGTTGCAGGCAGGGGAGGCGACACATGTGCACGCGCATTTCGGCACCAACTCTACTGAAGTGGTCATGCTGGCCAACGCCCTGGGCGGGCCGGCATACAGCTTTAcc                                                                                                                           >  7:154529/1‑121 (MQ=255)                                                ccAGGTGCTGCAGTGGTTGCAGGCAGGGGAGGCGACACATGTGCACGCGCATTTCGGCACCAACTCTACTGAAGTGGTCATGCTGGCCAACGCCCTGGGCGGGCCGGCATACAGCTTTAcc                                                                                                                           <  8:154529/121‑1 (MQ=255)                                                  aGGTGCTGCAGTGGTTGCAGGCAGGGGAGGCGACACATGTGCACGCGCATTTCGGCACCAACTCTACTGAAGTGGTCATGCTGGCCAACGCCCTGGGCGGGCCGGCATACAGCTTTACCGTGCACGGCCCTGAAGAATTc                                                                                                      <  2:191523/140‑1 (MQ=255)                                                  aGGTGCTGCAGTGGTTGCAGGCAGGGGAGGCGACACATGTGCACGCGCATTTCGGCACCAACTCTACTGAAGTGGTCATGCTGGCCAACGCCCTGGGCGGGCCGGCATACAGCTTTACCGTGCACGGCCCTGAAGAATTc                                                                                                      >  1:191523/1‑140 (MQ=255)                                                            gTGGTTGCAGGCAGGGGAGGCGACACATGTGCACGCGCATTTCGGCACCAACTCTACTGAAGTGGTCATGCTGGCCAACGCCCTGGGCGGGCCGGCATACAGCTTTACCGTGCACGGCCCTGAAGAATTCGACAAACCACAGTTCCTg                                                                                    >  6:384008/1‑148 (MQ=255)                                                             tGGTTGCAGGCAGGGGAGGCGACACATGTGCACGCGCATTTCGGCACCAACTCTACTGAAGTGGTCATGCTGGCCAACGCCCTGGGCGGGCCGGCATACAGCTTTACCGTGCACGGCCCTGAAGAATTCGACAAACCACAGTTCCTGCa                                                                                  >  5:302550/1‑149 (MQ=255)                                                                ttGCAGGCAGGGGAGGCGACACATGTGCACGCGCATTTCGGCACCAACTCTACTGAAGTGGTCATGCTGGCCAACGCCCTGGGCGGGCCGGCATACAGCTTTACCGTGCACGGCCCTga                                                                                                             <  4:211382/119‑1 (MQ=255)                                                                ttGCAGGCAGGGGAGGCGACACATGTGCACGCGCATTTCGGCACCAACTCTACTGAAGTGGTCATGCTGGCCAACGCCCTGGGCGGGCCGGCATACAGCTTTACCGTGCACGGCCCTga                                                                                                             >  3:211382/1‑119 (MQ=255)                                                                ttGCAGGCAGGGGAGGCGACACATGTGCACGCGCATTTCGGCACCAACTCTACTGAAGTGGTCATGCTGGCCAACGCCCTGGGCGGGCCGGCATACAGCTTTACCGTGCACGGCCCTGAAGAATTCGACAAACCACAGTTCCTGCACtt                                                                               <  7:289419/149‑1 (MQ=255)                                                                   caggcaggGGAGGCGACACATGTGCACGCGCATTTCGGCACCAACTCTACTGAAGTGGTCATGCTGGCCAACGCCCTGGGCGGGCCGGCATACAGCTTTACCGTGCACGGCCCTGAAGAATTCGACAAACCACAGTTCCTGCACTTgg                                                                             <  5:151373/148‑1 (MQ=255)                                                                    aggcaggGGAGGCGACACATGTGCACGCGCATTTCGGCACCAACTCTACTGAAGTGGTCATGCTGGCCAACGCCCTGGGCGGGCCGGCATACAGCTTTACCGTGCACGGCCCTGAAGAATTCGACAAACCACAGTTCCTGCACTTGGGt                                                                           >  8:231325/1‑149 (MQ=255)                                                                      gagctcaccgccgcgacaaaggcggcgcgccgtactttctcacccaagtgcaggaactgtggtttgtcgaattcttcaGGGCCGGCATACAGCTTTACCGTGCACGGccc                                                                                                                <  3:178377‑M1/32‑1 (MQ=255)                                                                      gagctcaccgccgcgacaaaggcggcgcgccgtactttctcacccaagtgcaggaactgtggtttgtcgaattcttcaGGGCCGGCATACAGCTTTACCGTGCACGGccc                                                                                                                >  4:178377‑M1/79‑110 (MQ=255)                                                                            gAGGCGACACATGTGCACGCGCATTTCGGCACCAACTCTACTGAAGTGGTCATGCTGGCCAACGCCCTGGGCGGGCCGGCATACAGCTTTACCGTGCACGGCCCTGAAGAATTCGACAAACCACAGTTCCTGCACTTGGGTGAGAAAGt                                                                   <  5:384008/149‑1 (MQ=255)                                                                            gAGGCGACACATGTGCACGCGCATTTCGGCACCAACTCTACTGAAGTGGTCATGCTGGCCAACGCCCTGGGCGGGCCGGCATACAGCTTTACCGTGCACGGCCCTGAAGAATTCGACAAACCACAGTTCCTGCACTTGGGTGAGAAAGt                                                                   <  1:373475/149‑1 (MQ=255)                                                                                 gACACATGTGCACGCGCATTTCGGCACCAACTCTACTGAAGTGGTCATGCTGGCCAACGCCCTGGGCGGGCCGGCATACAGCTTTACCGTGCACGGCCCTGAAGAATTCGACAAACCACAGTTCCTGCACTTGGGTGAGAAAGTACGgc                                                              >  6:161225/1‑149 (MQ=255)                                                                                    acaTGTGCACGCGCATTTCGGCACCAACTCTACTGAAGTGGTCATGCTGGCCAACGCCCTGGGCGGGCCGGCATACAGCTTTACCGTGCACGGCCCTGAAGAATTCGACAAACCACAGTTCCTGCACTTGGGTGAGAAAGTACGgcgcg                                                           >  5:57146/1‑149 (MQ=255)                                                                                           cACGCGCATTTCGGCACCAACTCTACTGAAGTGGTCATGCTGGCCAACGCCCTGGGCGGGCCGGCATACAGCTTTACCGTGCACGGCCCTGAAGAATTCGACAAACCACAGTTCCTGCACTTGGGTGAGAAAGTACGGCGCGCCGCCtt                                                    <  7:217714/149‑1 (MQ=255)                                                                                           cACGCGCATTTCGGCACCAACTCTACTGAAGTGGTCATGCTGGCCAACGCCCTGGGCGGGCCGGCATACAGCTTTACCGTGCACGGCCCTGAAGAATTCGACAAACCACAGTTCCTGCACTTGGGTGAGAAAGTACGGCGCGCCGCCt                                                     <  8:123755/148‑1 (MQ=255)                                                                                                        gCACCAACTCTACTGAAGTGGTCATGCTGGCCAACGCCCTGGGCGGGCCGGCATACAGCTTTACCGTGCACGGCCCTGAAGAATTCGACAAACCACAGTTCCTGCACTTGGGTGAGAAAGTACGGCGCGCCGCCTTTGTCGCGGCGGTg                                       <  2:279775/149‑1 (MQ=255)                                                                                                          aCCAACTCTACTGAAGTGGTCATGCTGGCCAACGCCCTGGGCGGGCCGGCATACAGCTTTACCGTGCACGGCCCTGAAGAATTCGACAAACCACAGTTCCTGCACTTGGGTGAGAAAGTACGGCGCGCCGCCTTTGTCGCGGCGGTGAg                                     >  3:81857/1‑149 (MQ=255)                                                                                                             aaCTCTACTGAAGTGGTCATGCTGGCCAACGCCCTGGGCGGGCCGGCATACAGCTTTACCGTGCACGGCCCTGAAGAATTCGACAAACCACAGTTCCTGCACTTGGGTGAGAAAGTACGGCGCGCCGCCTTTGTCGCGGCGGTGAGCTc                                  >  1:339643/1‑149 (MQ=255)                                                                                                                   aCTGAAGTGGTCATGCTGGCCAACGCCCTGGGCGGGCCGGCATACAGCTTTACCGTGCACGGCCCTGAAGAATTCGACAAACCACAGTTCCTGCACTTGGGTGAGAAAGTACGGCGCGCCGCCTTTGTCGCGGCGGTGAGCTCGTACgg                            >  5:241148/1‑149 (MQ=255)                                                                                                                     tGAAGTGGTCATGCTGGCCAACGCCCTGGGCGGGCCGGCATACAGCTTTACCGTGCACGGCCCTGAAGAATTCGACAAACCACAGTTCCTGCACTTGGGTGAGAAAGTACGGCGCGCCGCCTTTGTCGCGGCGGTGAGCTCGTACGGgc                          >  3:172214/1‑149 (MQ=255)                                                                                                                     tGAAGTGGTCATGCTGGCCAACGCCCTGGGCGGGCCGGCATACAGCTTTACCGTGCACGGCCCTGAAGAATTCGACAAACCACAGTTCCTGCACTTGGGTGAGAAAGAACGGCGCGCCGCCGATGTCGCGGCGGTGAGCTCGTACGGgc                          >  5:67892/1‑149 (MQ=255)                                                                                                                     tGAAGTGGTCATGCTGGCCAACGCCCTGGGCGGGCCGGCATACAGCTTTACCGTGAACGGCCCTGAAGAATTCGACAAACCACAGTTCCTGCACTTGGGTGAGAAAGTAAGGCGCGCCGCCTTTGTCGCGGCGGTGAGCTCGTACGGgc                          >  8:63246/1‑149 (MQ=255)                                                                                                                               aTGCTGGCCAACGCCCTGGGCGGGCCGGCATACAGCTTTACCGTGCACGGCCCTGAAGAATTCGACAAACCACAGTTCCTGCACTTGGGTGAGAAAGTACGGCGCGCCGCCTTTGTCGCGGCGGTGAGCTCGTACGGGCGCAGCCAGtt                <  4:172214/149‑1 (MQ=255)                                                                                                                                   tGGCCAACGCCCTGGGCGGGCCGGCATACAGCTTTACCGTGAACGGCCCTGAAGAATTCGACAAACCACAGTTCCTGCACTTGGGTGAGAAAGTACGGCGCGCCGCCTTTGTCGCGGCGGTGAGATCGTACGGGCGCAGCCAGTTGTAc            >  2:364788/1‑149 (MQ=255)                                                                                                                                     gCCAACGCCCTGGGCGGGCCGGCATACAGCTTTACCGTGCACGGCCCTGAAGAATTCGACAAACCACAGTTCCTGCACTTGGGTGAGAAAGTACGGCGCGCCGCCttt                                                   >  6:347344/1‑108 (MQ=255)                                                                                                                                     gCCAACGCCCTGGGCGGGCCGGCATACAGCTTTACCGTGCACGGCCCTGAAGAATTCGACAAACCACAGTTCCTGCACTTGGGTGAGAAAGTACGGCGCGCCGCCttt                                                   <  5:347344/108‑1 (MQ=255)                                                                                                                                       cAACGCCCTGGGCGGGCCGGCATACAGCTTTACCGTGCACGGCCCTGAAGAATTCGACAAACCACAGTTCCTGCACTTGGGTGAGAAAGTACGGCGCGCCGCCTTTGTcgc                                              >  1:110917/1‑111 (MQ=255)                                                                                                                                       cAACGCCCTGGGCGGGCCGGCATACAGCTTTACCGTGCACGGCCCTGAAGAATTCGACAAACCACAGTTCCTGCACTTGGGTGAGAAAGTACGGCGCGCCGCCTTTGTcgc                                              <  2:110917/111‑1 (MQ=255)                                                                                                                                       cAACGCCCTGGGCGGGCCGGCATACAGCTTTACCGTGCACGGCCCTGAAGAATTCGACAAACCACAGTTCCTGCACTTGGGTGAGAAAGTACGGCGCGCCGCCTTTGTCGCGGCGGTGAGCTCGTACGGGCGCAGCCAGTTGTACCGtt        <  6:302550/149‑1 (MQ=255)                                                                                                                                           gCCCTGGGCGGGCCGGCATACAGCTTTACCGTGCACGGCCCTGAAGAATTCGACAAACCACAGTTCCTGCACTTGGGTGAGAAAGTACGGCGCGCCGCCTTTGTCGCGGCGGTGAGCTCGTACGGGCGCAGCCAGTTGTACCGTTGGGt    <  7:236708/149‑1 (MQ=255)                                                                                                                                             ccTGGGCGGGCCGGCATACAGCTTTACCGTGCACGGCCCTGAAGAATTCGACAAACCACAGTTCCTGCACTTGGGTGAGAAAGTACGGCGCGCCGCCTTTGTCGCGGCGGTGAGCTCGTAAGGGCGCAGCCAGTTGTCCCGTTGGGTgg  >  8:310687/1‑149 (MQ=255)                                                                                                                                                    |                                                                                                                                              GCCGACCGTGCCTGGCCCTACCACCTGGTCTACCTGGCCGAGGCCTGCCAGGTGCTGCAGTGGTTGCAGGCAGGGGAGGCGACACATGTGCACGCGCATTTCGGCACCAACTCTACTGAAGTGGTCATGCTGGCCAACGCCCTGGGCGGGCCGGCATACAGCTTTACCGTGCACGGCCCTGAAGAATTCGACAAACCACAGTTCCTGCACTTGGGTGAGAAAGTACGGCGCGCCGCCTTTGTCGCGGCGGTGAGCTCGTACGGGCGCAGCCAGTTGTACCGTTGGGTGG  >  NC_002947/3554670‑3554958

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.