New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3554817 =	49 (0.790)	3 (0.050)	3/254	NT	6.4%	coding (433/1203 nt)	PP_3139	group 1 family glycosyl transferase
	?	NC_002947	3554849 =	41 (0.690)					coding (465/1203 nt)	PP_3139	group 1 family glycosyl transferase

CTGGCCGAGGCCTGCCAGGTGCTGCAGTGGTTGCAGGCAGGGGAGGCGACACATGTGCACGCGCATTTCGGCACCAACTCTACTGAAGTGGTCATGCTGGCCAACGCCCTGGGCGGGCCGGCATACAGCTTTACCGTGCACGGCCCTGAAGAATTCGACAAACCACAGTTCCTGCACTTGGGTGAGAAAGTACGGCGCGCCGCCTTTGTCGCGGCGGTGAGCTCGTACGGGCGCAGCCAGTTGTACCGTTGGGTGGCGCCCGAGCAGTGGGGCAAGGTGAAGGTGGTGCATTGCG  >  NC_002947/3554703‑3554997                                                                                                                                                   |                                                                                                                                                     cTGGCCGAGGCCTGCCAGGTGCTGCAGTGGTTGCAGGCAGGGGAGGCGACACATGTGCACGCGCATTTCGGCACCAACTCTACTGAAGTGGTCATGCTGGCCAACGCCCTGGGCGGGCCGGCATACAGCTTTACCGTGCACGGCCCTg                                                                                                                                                     >  8:217714/1‑148 (MQ=255)   cgccacccaacggtacaactcgctgcgcccgtacgagctcaccgccgcgacaaaggcggcgcgccgtactttctcacccaagtgcaggaactgtggtttgtcgaattcttcaGGGCCGGCATACAGCTTTACCGTGCACGGCCCTgaag                                                                                                                                                  >  7:318910‑M1/113‑149 (MQ=255)    gCCGAGGCCTGCCAGGTGCTGCAGTGGTTGCAGGCAGGGGAGGCGACACATGTGCACGCGCATTTCGGCACCAACTCTACTGAAGTGGTCATGCTGGCCAACGCCCTGGGCGGGCTGGCATACAGCTTTACCGTGCACGGCCCTgaa                                                                                                                                                   <  5:130940/147‑1 (MQ=255)    gCCGAGGCCTGCCAGGTGCTGCAGTGGTTGCAGGCAGGGGAGGCGACACATGTGCACGCGCATTTCGGCACCAACTCTACTGAAGTGGTCATGCTGGCCAACGCCCTGGGCGGGCCGGCATACAGCTTTACCGTGCACGGCCCTgaag                                                                                                                                                  >  3:240253/1‑148 (MQ=255)      cGAGGCCTGCCAGGTGCTGCAGTGGTTGCAGGCAGGGGAGGCGACACATGTGCACGCGCATTTCGGCACCAACTCTACTGAAGTGGTCATGCTGGCCAACGCCCTGGGCGGGCCGGCATACAGCTTTACCGTGCACGGCCCTGAAGAAt                                                                                                                                               <  3:185909/149‑1 (MQ=255)       gAGGCCTGCCAGGTGCTGCAGTGGTTGCAGGCAGGGGAGGCGACACATGTGCACGCGCATTTCGGCACCAACTCTACTGAAGTGGTCATGCTGGCCAACGCCCTGGGCGGGCCGGCATACAGCTTTACCGTGCACGGCCCTGAAGAAtt                                                                                                                                              <  2:148594/149‑1 (MQ=255)        aGGCCTGCCAGGTGCTGCAGTGGTTGCAGGCAGGGGAGGCGACACATGTGCACGCGCATTTCGGCACCAACTCTACTGAAGTGGTCATGCTGGCCAACGCCCTGGGCGGGCCGGCATACAGCTTTACCGTGCACGGCCCTGAAGAATTc                                                                                                                                             <  3:186302/149‑1 (MQ=255)          gCCTGCCAGGTGCTGCAGTGGTTGCAGGCAGGGGAGGCGACACATGTGCACGCGCATTTCGGCACCAACTCTACTGAAGTGGTCATGCTGGCCAACGCCCTGGGCGGGCCGGCATACAGCTTTACCGTGCACGGCCCTGAAGAATTCGa                                                                                                                                           <  4:177965/149‑1 (MQ=255)            cTGCCAGGTGCTGCAGTGGTTGCAGGCAGGGGAGGCGACACATGTGCCCGCGCTTTTCGGCAGCAAGTCTTCTCAAGTGGTCATGCTGGCCAACGCCCTCGGCGGGCCGGAATACAGCTTTACCGTGCACCGCACTGAAGAATTCGAc                                                                                                                                          >  1:242522/1‑148 (MQ=255)                 aGGTGCTGCAGTGGTTGCAGGCAGGGGAGGCGACACATGTGCACGCGCATTTCGGCACCAACTCTACTGAAGTGGTCATGCTGGCCAACGCCCTGGGCGGGCCGGCATACAGCTTTACCGTGCACGGCCCTGAAGAATTc                                                                                                                                             >  1:191523/1‑140 (MQ=255)                 aGGTGCTGCAGTGGTTGCAGGCAGGGGAGGCGACACATGTGCACGCGCATTTCGGCACCAACTCTACTGAAGTGGTCATGCTGGCCAACGCCCTGGGCGGGCCGGCATACAGCTTTACCGTGCACGGCCCTGAAGAATTc                                                                                                                                             <  2:191523/140‑1 (MQ=255)                           gTGGTTGCAGGCAGGGGAGGCGACACATGTGCACGCGCATTTCGGCACCAACTCTACTGAAGTGGTCATGCTGGCCAACGCCCTGGGCGGGCCGGCATACAGCTTTACCGTGCACGGCCCTGAAGAATTCGACAAACCACAGTTCCTg                                                                                                                           >  6:384008/1‑148 (MQ=255)                            tGGTTGCAGGCAGGGGAGGCGACACATGTGCACGCGCATTTCGGCACCAACTCTACTGAAGTGGTCATGCTGGCCAACGCCCTGGGCGGGCCGGCATACAGCTTTACCGTGCACGGCCCTGAAGAATTCGACAAACCACAGTTCCTGCa                                                                                                                         >  5:302550/1‑149 (MQ=255)                               ttGCAGGCAGGGGAGGCGACACATGTGCACGCGCATTTCGGCACCAACTCTACTGAAGTGGTCATGCTGGCCAACGCCCTGGGCGGGCCGGCATACAGCTTTACCGTGCACGGCCCTga                                                                                                                                                    >  3:211382/1‑119 (MQ=255)                               ttGCAGGCAGGGGAGGCGACACATGTGCACGCGCATTTCGGCACCAACTCTACTGAAGTGGTCATGCTGGCCAACGCCCTGGGCGGGCCGGCATACAGCTTTACCGTGCACGGCCCTga                                                                                                                                                    <  4:211382/119‑1 (MQ=255)                               ttGCAGGCAGGGGAGGCGACACATGTGCACGCGCATTTCGGCACCAACTCTACTGAAGTGGTCATGCTGGCCAACGCCCTGGGCGGGCCGGCATACAGCTTTACCGTGCACGGCCCTGAAGAATTCGACAAACCACAGTTCCTGCACtt                                                                                                                      <  7:289419/149‑1 (MQ=255)                                  caggcaggGGAGGCGACACATGTGCACGCGCATTTCGGCACCAACTCTACTGAAGTGGTCATGCTGGCCAACGCCCTGGGCGGGCCGGCATACAGCTTTACCGTGCACGGCCCTGAAGAATTCGACAAACCACAGTTCCTGCACTTgg                                                                                                                    <  5:151373/148‑1 (MQ=255)                                   aggcaggGGAGGCGACACATGTGCACGCGCATTTCGGCACCAACTCTACTGAAGTGGTCATGCTGGCCAACGCCCTGGGCGGGCCGGCATACAGCTTTACCGTGCACGGCCCTGAAGAATTCGACAAACCACAGTTCCTGCACTTGGGt                                                                                                                  >  8:231325/1‑149 (MQ=255)                                           gAGGCGACACATGTGCACGCGCATTTCGGCACCAACTCTACTGAAGTGGTCATGCTGGCCAACGCCCTGGGCGGGCCGGCATACAGCTTTACCGTGCACGGCCCTGAAGAATTCGACAAACCACAGTTCCTGCACTTGGGTGAGAAAGt                                                                                                          <  1:373475/149‑1 (MQ=255)                                           gAGGCGACACATGTGCACGCGCATTTCGGCACCAACTCTACTGAAGTGGTCATGCTGGCCAACGCCCTGGGCGGGCCGGCATACAGCTTTACCGTGCACGGCCCTGAAGAATTCGACAAACCACAGTTCCTGCACTTGGGTGAGAAAGt                                                                                                          <  5:384008/149‑1 (MQ=255)                                                gACACATGTGCACGCGCATTTCGGCACCAACTCTACTGAAGTGGTCATGCTGGCCAACGCCCTGGGCGGGCCGGCATACAGCTTTACCGTGCACGGCCCTGAAGAATTCGACAAACCACAGTTCCTGCACTTGGGTGAGAAAGTACGgc                                                                                                     >  6:161225/1‑149 (MQ=255)                                                   acaTGTGCACGCGCATTTCGGCACCAACTCTACTGAAGTGGTCATGCTGGCCAACGCCCTGGGCGGGCCGGCATACAGCTTTACCGTGCACGGCCCTGAAGAATTCGACAAACCACAGTTCCTGCACTTGGGTGAGAAAGTACGgcgcg                                                                                                  >  5:57146/1‑149 (MQ=255)                                                          cACGCGCATTTCGGCACCAACTCTACTGAAGTGGTCATGCTGGCCAACGCCCTGGGCGGGCCGGCATACAGCTTTACCGTGCACGGCCCTGAAGAATTCGACAAACCACAGTTCCTGCACTTGGGTGAGAAAGTACGGCGCGCCGCCtt                                                                                           <  7:217714/149‑1 (MQ=255)                                                          cACGCGCATTTCGGCACCAACTCTACTGAAGTGGTCATGCTGGCCAACGCCCTGGGCGGGCCGGCATACAGCTTTACCGTGCACGGCCCTGAAGAATTCGACAAACCACAGTTCCTGCACTTGGGTGAGAAAGTACGGCGCGCCGCCt                                                                                            <  8:123755/148‑1 (MQ=255)                                                                       gCACCAACTCTACTGAAGTGGTCATGCTGGCCAACGCCCTGGGCGGGCCGGCATACAGCTTTACCGTGCACGGCCCTGAAGAATTCGACAAACCACAGTTCCTGCACTTGGGTGAGAAAGTACGGCGCGCCGCCTTTGTCGCGGCGGTg                                                                              <  2:279775/149‑1 (MQ=255)                                                                         aCCAACTCTACTGAAGTGGTCATGCTGGCCAACGCCCTGGGCGGGCCGGCATACAGCTTTACCGTGCACGGCCCTGAAGAATTCGACAAACCACAGTTCCTGCACTTGGGTGAGAAAGTACGGCGCGCCGCCTTTGTCGCGGCGGTGAg                                                                            >  3:81857/1‑149 (MQ=255)                                                                            aaCTCTACTGAAGTGGTCATGCTGGCCAACGCCCTGGGCGGGCCGGCATACAGCTTTACCGTGCACGGCCCTGAAGAATTCGACAAACCACAGTTCCTGCACTTGGGTGAGAAAGTACGGCGCGCCGCCTTTGTCGCGGCGGTGAGCTc                                                                         >  1:339643/1‑149 (MQ=255)                                                                                  aCTGAAGTGGTCATGCTGGCCAACGCCCTGGGCGGGCCGGCATACAGCTTTACCGTGCACGGCCCTGAAGAATTCGACAAACCACAGTTCCTGCACTTGGGTGAGAAAGTACGGCGCGCCGCCTTTGTCGCGGCGGTGAGCTCGTACgg                                                                   >  5:241148/1‑149 (MQ=255)                                                                                    tGAAGTGGTCATGCTGGCCAACGCCCTGGGCGGGCCGGCATACAGCTTTACCGTGCACGGCCCTGAAGAATTCGACAAACCACAGTTCCTGCACTTGGGTGAGAAAGTACGGCGCGCCGCCTTTGTCGCGGCGGTGAGCTCGTACGGgc                                                                 >  3:172214/1‑149 (MQ=255)                                                                                    tGAAGTGGTCATGCTGGCCAACGCCCTGGGCGGGCCGGCATACAGCTTTACCGTGCACGGCCCTGAAGAATTCGACAAACCACAGTTCCTGCACTTGGGTGAGAAAGAACGGCGCGCCGCCGATGTCGCGGCGGTGAGCTCGTACGGgc                                                                 >  5:67892/1‑149 (MQ=255)                                                                                    tGAAGTGGTCATGCTGGCCAACGCCCTGGGCGGGCCGGCATACAGCTTTACCGTGAACGGCCCTGAAGAATTCGACAAACCACAGTTCCTGCACTTGGGTGAGAAAGTAAGGCGCGCCGCCTTTGTCGCGGCGGTGAGCTCGTACGGgc                                                                 >  8:63246/1‑149 (MQ=255)                                                                                              aTGCTGGCCAACGCCCTGGGCGGGCCGGCATACAGCTTTACCGTGCACGGCCCTGAAGAATTCGACAAACCACAGTTCCTGCACTTGGGTGAGAAAGTACGGCGCGCCGCCTTTGTCGCGGCGGTGAGCTCGTACGGGCGCAGCCAGtt                                                       <  4:172214/149‑1 (MQ=255)                                                                                                  tGGCCAACGCCCTGGGCGGGCCGGCATACAGCTTTACCGTGAACGGCCCTGAAGAATTCGACAAACCACAGTTCCTGCACTTGGGTGAGAAAGTACGGCGCGCCGCCTTTGTCGCGGCGGTGAGATCGTACGGGCGCAGCCAGTTGTAc                                                   >  2:364788/1‑149 (MQ=255)                                                                                                    gCCAACGCCCTGGGCGGGCCGGCATACAGCTTTACCGTGCACGGCCCTGAAGAATTCGACAAACCACAGTTCCTGCACTTGGGTGAGAAAGTACGGCGCGCCGCCttt                                                                                          >  6:347344/1‑108 (MQ=255)                                                                                                    gCCAACGCCCTGGGCGGGCCGGCATACAGCTTTACCGTGCACGGCCCTGAAGAATTCGACAAACCACAGTTCCTGCACTTGGGTGAGAAAGTACGGCGCGCCGCCttt                                                                                          <  5:347344/108‑1 (MQ=255)                                                                                                      cAACGCCCTGGGCGGGCCGGCATACAGCTTTACCGTGCACGGCCCTGAAGAATTCGACAAACCACAGTTCCTGCACTTGGGTGAGAAAGTACGGCGCGCCGCCTTTGTcgc                                                                                     >  1:110917/1‑111 (MQ=255)                                                                                                      cAACGCCCTGGGCGGGCCGGCATACAGCTTTACCGTGCACGGCCCTGAAGAATTCGACAAACCACAGTTCCTGCACTTGGGTGAGAAAGTACGGCGCGCCGCCTTTGTcgc                                                                                     <  2:110917/111‑1 (MQ=255)                                                                                                      cAACGCCCTGGGCGGGCCGGCATACAGCTTTACCGTGCACGGCCCTGAAGAATTCGACAAACCACAGTTCCTGCACTTGGGTGAGAAAGTACGGCGCGCCGCCTTTGTCGCGGCGGTGAGCTCGTACGGGCGCAGCCAGTTGTACCGtt                                               <  6:302550/149‑1 (MQ=255)                                                                                                          gCCCTGGGCGGGCCGGCATACAGCTTTACCGTGCACGGCCCTGAAGAATTCGACAAACCACAGTTCCTGCACTTGGGTGAGAAAGTACGGCGCGCCGCCTTTGTCGCGGCGGTGAGCTCGTACGGGCGCAGCCAGTTGTACCGTTGGGt                                           <  7:236708/149‑1 (MQ=255)                                                                                                            ccTGGGCGGGCCGGCATACAGCTTTACCGTGCACGGCCCTGAAGAATTCGACAAACCACAGTTCCTGCACTTGGGTGAGAAAGTACGGCGCGCCGCCTTTGTCGCGGCGGTGAGCTCGTAAGGGCGCAGCCAGTTGTCCCGTTGGGTgg                                         >  8:310687/1‑149 (MQ=255)                                                                                                              cttcagggccgtgcacggtaaagctgtatgccggcccTGAAGAATTCGACAAACCACAGTTCCTGCACTTGGGTGAGAAAGTACGGCGCGCCGCCTTTGTCGCGGCGGTGAGCTCGTACGGGCGCAGCGAGTTGTACCGTTGGGTGgcg                                       >  7:318910‑M2/38‑149 (MQ=255)                                                                                                                   gggccgtgcacggtaaagctgtatgccggcccTGAAGAATTCGACAAACCACAGTTCCTGCACTTGGGTGAGAAAGTACGGCGCGCCGCCTTTGTCGCGGCGGTGAGCTc                                                                         <  3:178377‑M2/78‑1 (MQ=255)                                                                                                                   gggccgtgcacggtaaagctgtatgccggcccTGAAGAATTCGACAAACCACAGTTCCTGCACTTGGGTGAGAAAGTACGGCGCGCCGCCTTTGTCGCGGCGGTGAGCTc                                                                         >  4:178377‑M2/33‑110 (MQ=255)                                                                                                                         gctttcAGCTTTACCGTGCACGGCCCTGAAGAATTCGACAATCGACAGTTGCTGCAATTGGGTGAGAAAGTACGGCGCGCCGCCTTTGTCGCGGCGGTGAGATCGTACGGGCGCAGCCAGTTTTACCGTTGGGTGGCGCGCGAGCAGTg                            <  2:242522/144‑1 (MQ=255)                                                                                                                          cATTCAGCTTTACCTTGCACGGCCCTGAAGAATTCCACAAACCACAGTTCCTGCACTTGGGTTAGAAAGTACGGCGCGCCGCCTTTGTCGCGGCGGTGAGCTCGTACGGGCGCAGCCAGTTGTACCGTTGGGTGGCGCCCGAGCAGt                             <  8:248905/147‑1 (MQ=255)                                                                                                                           aTACAGCTTTACCGTGCACGGCCCTGAAGAATTCGACAAACCACAGTTCCTGCACTTGGGTGAGAAAGTACGGCGCGCCGCCTTTGTCGCGGCGGTGAGCTCGTACGGGCGCAGCCAGTTGTACCGTTGGGTGGCGCCCGAGCAGTggg                          >  6:86514/1‑149 (MQ=255)                                                                                                                           aTACAGCTTTACCGTGCACGGCCCTGAAGAATTCGACAAACCACAGTTCCTGCACTTGGGTGAGAAAGTACGGCGCGCCGCCTTTGTCGCGGCGGTGAGCTCGTACGGGCGCAGCCAGTTGTACCGTTGGGTGGCGCCCGAGCAGTggg                          >  5:15690/1‑149 (MQ=255)                                                                                                                           aTACAGCTTTACCGTGCACGGCCCTGAAGAATTCGACAAACCACAGTTCCTGCACTTGGGTGAGAAAGTACGGCGCGCCGCCTTTGTCGCGGCGGTGAGCTCGTACGGGCGCAGCCAGTTGTACCGTTGGGTGGCGCCCGAGCAGTggg                          <  5:161225/149‑1 (MQ=255)                                                                                                                               aGCTTTACCGTGCACGGCCCTGAAGAATTCGACAAACCACAGTTCCTGCACTTGGGTGAGAAAGTACGGCGCGCCGCCTTTGTCGCGGCGGTGAGCTCGTACGGGCGCAGCCAGTTGTACCGTTGGGTGGCGCCCGAGCAGTGGGGc                        >  7:258617/1‑147 (MQ=255)                                                                                                                                       cGTGCACGGCCCTGAAGAATTCGACAAACCACAGTTCCTGCACTTGGGTGAGAAAGTACGGCGCGCCGCCTTTGTCGCGGCGGTGAGCTCGTACGGGCGCAGCCAGTTGTACCGTTGGGTGGCGCCCGAGCAGTGGGGCaaggtgaagg              >  3:44168/1‑149 (MQ=255)                                                                                                                                              ggcccTGAAGAATTCGACAAACCACAGTTCCTGCACTTGGGTGAGAAAGTACGGCGAGCCGCCTTTGTCGCGGCGGTGAGCTCGTACGGGCGCAGCCAGTTGTACCGTTGGGTTGCGCGCGAGCAGTGGGGCAAGGTGAAGGTCGAGCa       >  3:139098‑M2/6‑149 (MQ=255)                                                                                                                                                cccTGAAGAATTCGACAAACCACAGTTCCTGCACTTGGGTGAGAAAGTACGGCGCGCCGCCTTTGTCGCGGCGGTGAGCTCGTACGGGCGCAGCCAGTTGTACCGTTGGGTGGCGCCCGAGCAGTGGGGCAAGGTGAAGGTGGTGCAtt     <  2:339643‑M2/146‑1 (MQ=255)                                                                                                                                                 ccTGAAGAATTCGACAAACCACAGTTCCTGCACTTGGGTGAGAAAGTACGGCGCGCCGCCTTTGTCGCGGCGGTGAGCTCGTACGGGCGCAGCCAGTTGTACCGTTGGGTGGCGCCCGAGCAGTGGGGCAAGGTGAAGGTGGTGCATTg    <  6:15690‑M2/147‑1 (MQ=255)                                                                                                                                                   tGAAGAATTCGACAAACCACAGTTCCTGCACTTGGGTGAGAAAGTACGGCGCGCCGCCTTTGTCGCGGCGGTGAGCTCGTACGGGCGCAGCCAGTTGTACCGTTGGGTGGCGCCCGAGCAGTGGGGCAAGGTGAAGGTGGTGCATTGCg  >  6:30249/1‑149 (MQ=255)                                                                                                                                                   |                                                                                                                                                     CTGGCCGAGGCCTGCCAGGTGCTGCAGTGGTTGCAGGCAGGGGAGGCGACACATGTGCACGCGCATTTCGGCACCAACTCTACTGAAGTGGTCATGCTGGCCAACGCCCTGGGCGGGCCGGCATACAGCTTTACCGTGCACGGCCCTGAAGAATTCGACAAACCACAGTTCCTGCACTTGGGTGAGAAAGTACGGCGCGCCGCCTTTGTCGCGGCGGTGAGCTCGTACGGGCGCAGCCAGTTGTACCGTTGGGTGGCGCCCGAGCAGTGGGGCAAGGTGAAGGTGGTGCATTGCG  >  NC_002947/3554703‑3554997

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.