New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3587081	44 (0.710)	4 (0.070)	4/258	NT	7.4%	coding (1275/1329 nt)	benK	benzoate MFS transporter
	?	NC_002947	= 3587128	57 (0.950)					coding (1322/1329 nt)	benK	benzoate MFS transporter

CCGGCCTGGGCTGGGCCTCGGGCATCGGCCGTAATGGCGCCATCGTCGGCCCGCTGCTGGGCGGTGCGCTGATGGGCATCAACCTGCCACTGCAACTCAATTTCATCGCCTTTGCCATCCCTGGCGCCATCGCTGCGCTGGCCATGGCCGTGCACCTGGCCAGTGGTCGGCGCCACGCCCAGACCCTGGCGGCGCAGGCCTGAACCGAACAGAACAAGACGAGGTAACCCCCATGACCGTGAACATTTCCCATACTGCCGAGGTACAGCAGTTCTTCGAGCAGGCCGCAGGCTTTTG  >  NC_002947/3586933‑3587229                                                                                                                                                     |                                                                                                                                                     ccGGCCTGGGCTGGGCCTCGGGCATCGGCCGTAATGGCGCCATCGTCGGCCCGCTGCTGGGCGGTGCGCTGATGGGCATCAACCTGCCACTGCAACTCAATTTCATCGCCTTTGCCATCCCTGGCGCCATCGCTGCGCTGGCCATGGCC                                                                                                                                                      >  2:135316‑M1/1‑149 (MQ=255)         ggctgggcCTCGGGCATCGGCCGTAATGGCGCCATCGTCGGCCCGCTGCTGGGCGGTGCGCTGATGGGCATCAACCTGCCACTGCAACTCAATTTCATCGCCTTTGCCATCCCTGGCGCCATCGCTGCGCTGGCCATGGCCGTGCACCt                                                                                                                                              <  6:247196/149‑1 (MQ=255)                ccTCGGGCATCGGCCGTAATGGCGCCATCGTCGGCCCGCTGCTGGGCGGTGCGCTGATGGGCATCAACCTGCCACTGCAACTCAATTTCATCGCCTTTGCCATCCCTGGCGCCATCGCTGCGCTGGCCATGGCCtgcgccgccagggtc                                                                                                                                       >  4:49488‑M1/1‑134 (MQ=255)                ccTCGGGCATCGGCCGTAATGGCGCCATCGTCGGCCCGCTGCTGGGCGGTGCGCTGATGGGCATCAACCTGCCACTGCAACTCAATTTCATCGCCTTTGCCATCCCTGGCGCCATCGCTGCGCTGGCCATGGCCGTGCACCTg                                                                                                                                             >  1:180465/1‑143 (MQ=255)                ccTCGGGCATCGGCCGTAATGGCGCCATCGTCGGCCCGCTGCTGGGCGGTGCGCTGATGGGCATCAACCTGCCACTGCAACTCAATTTCATCGCCTTTGCCATCCCTGGCGCCATCGCTGCGCTGGCCATGGCCGTGCACCTg                                                                                                                                             <  2:180465/143‑1 (MQ=255)                 cTCGGGCATCGGCCGTAATGGCGCCATCGTCGGCCCGCTGCTGGGCGGTGCGCTGATGGGCATCAACCTGCCACTGCAACTCAATTTCATCGCCTTTGCCATCCCTGGCGCCATCGCTGCGCTGGCCATGGCCGTGCACCTGGCCAGTg                                                                                                                                      >  2:328194/1‑149 (MQ=255)                 cTCGGGCATCGGCCGTAATGGCGCCATCGTCGGCCCGCTGCTGGGCGGTGCGCTGATGGGCATCAACCTGCCACTGCAACTCAATTTCATCGCCTTTGCCATCCCTGGCGCCATCGCTGCGCTGGCCATGGCCGTGCACCTGGCCAGTg                                                                                                                                      <  8:221295/149‑1 (MQ=255)                            gCCGTAATGGCGCCATCGTCGGCCCGCTGCTGGGCGGTGCGCTGATGGGCATCAACCTGCCACTGCAACTCAATTTCATCGCCTTTGCCATCCCTGGCGCCATCGCTGCGCTGGCCATGGCCGTGCACCTGGCCAGTGGTCGgcgc                                                                                                                              <  3:95861/146‑1 (MQ=255)                            gCCGTAATGGCGCCATCGTCGGCCCGCTGCTGGGCGGTGCGCTGATGGGCATCAACCTGCCACTGCAACTCAATTTCATCGCCTTTGCCATCCCTGGCGCCATCGCTGCGCTGGCCATGGCCGTGCACCTGGCCAGTGGTCGgcgc                                                                                                                              >  4:95861/1‑146 (MQ=255)                                     gcgcCATCGTCGGCCCGCTGCTGGGCGGTGCGCTGATGGGCATCAACCTGCCACTGCAACTCAATTTCATCGCCTTTGCCATCCCTGGCGCCATCGCTGCGCTGGCCATGGCCGTGCACCTGGCCAGTGGTCGGCGCCACGCCCAGAcc                                                                                                                  <  7:352755/149‑1 (MQ=255)                                         cATCGTCGGCCCGCTGCTGGGCGGTGCGCTGATGGGCATCAACCTGCCACTGCAACTCAATTTCATCGCCTTTGCCATCCCTGGCGCCATCGCTGCGCTGGCCATGGCCGTGCACCTGGCCAGTGGTCGGCGCCACGCCCAGACCCTgg                                                                                                              >  7:111590/1‑149 (MQ=255)                                                 gCCCGCTGCTGGGCGGTGCGCTGATGGGCATCAACCTGCCACTGCAACTCAATTTCATCGCCTTTGCCATCCCTGGCGCCATCGCTGCGCTGGCCATGGCCtgcgccgccagggtctgggcgtggcgccgaccactggccaggtgcacg                                                                                                      >  3:316839‑M1/1‑101 (MQ=255)                                                         ctgGGCGGTGCGCTGATGGGCATCAACCTGCCACTGCAACTCAATTTCATCGCCTTTGCCATCCCTGGCGCCATCGCTGCGCTGGCCATGGCCtgcgccgccagggtctgggcgtggcgccgaccactggccaggtgcacggccatgg                                                                                               <  4:316839‑M1/148‑56 (MQ=255)                                                            ggCGGTGCGCTGATGGGCATCAACCTGCCACTGCAACTCAATTTCATCGCCTTTGCCATCCCTGGCGCCATCGCTGCGCTGGCCATGGCCtgcgccgccagggtctgggcgtggcgccgaccactggccaggtgcacggccatggcca                                                                                            <  3:49488‑M1/148‑59 (MQ=255)                                                             gCGGTGCGCTGATGGGCATCAACCTGCCACTGCAACTCAATTTCATCGCCTTTGCCATCCCTGGCGCCATCGCTGCGCTGGCCATGGCCGTGCACCTGGCCAGTGGTCGGCGCCACGCCCAGACCCTGGCGGCGCAGGCCTGAACCgaa                                                                                          >  6:240699/1‑149 (MQ=255)                                                             gCGGTGCGCTGATGGGCATCAACCTGCCACTGCAACTCAATTTCATCGCCTTTGCCATCCCTGGCGCCATCGCTGCGCTGGCCATGGCCGTGCACCTGGCCAGTGGTCGGCGCCACGCCCAGACCCTGGCGGCGCAGGCCTGAACCgaa                                                                                          <  4:293536/149‑1 (MQ=255)                                                                  gcgcTGATGGGCATCAACCTGCCACTGCAACTCAATTTCATCGCCTTTGCCATCCCTGGCGCCATCGCTGCGCTGGCCATGGCCGTGCACCTGGCCAGTGGTCGGCGCCACGCCCAGACCCTGGCGGCGCAGGCCTGAACCgaacagaa                                                                                     >  1:283070/1‑149 (MQ=255)                                                                   cgcTGATGGGCATCAACCTGCCACTGCAACTCAATTTCATCGCCTTTGCCATCCCTGGCGCCATCGCTGCGCTGGCCATGGCCGTGCACCTGGCCAGTGGTCGGCGCCACGCCCAGACCCTGGCGGCGCAGGCCTGAACCgaacagaa                                                                                     >  6:173806/1‑148 (MQ=255)                                                                   cgcTGATGGGCATCAACCTGCCACTGCAACTCAATTTCATCGCCTTTGCCATCCCTGGCGCCATCGCTGCGCTGGCCATGGCCGTGCACCTGGCCAGTGGTCGGCGCCACGCCCAGACCCTGGCGGCGCAGGCCTGAACCgaacagaa                                                                                     <  3:194202/148‑1 (MQ=255)                                                                           ggCATCAACCTGCCACTGCAACTCAATTTCATCGCCTTTGCCATCCCTGGCGCCATCGCTGCGCTGGCCATGGCCGTGCACCTGGCCAGTGGTCGGCGCCACGCCCAGACCCTGGCGGCGCAGGCCTGAACCGAACAGAACAAGACGAg                                                                            >  4:50001/1‑149 (MQ=255)                                                                            gCATCAACCTGCCACTGCAACTCAATTTCATCGCCTTTGCCATCCCTGGCGCCATCGCTGCGCTGGCCATGGCCGTGCACCTGGCCAGTGGTCGGCGCCACGCCCAGACCCTGGCGGCGCAGGCCTGAACCGAACAGAACAAGACGAgg                                                                           >  1:384429/1‑149 (MQ=255)                                                                             cATCAACCTGCCACTGCAACTCAATTTCATCGCCTTTGCCATCCCTGGCGCCATCGCTGCGCTGGCCATGGCCGTGCACCTGGCCAGTGGTCGGCGCCACGCCCAGACCCTGGCGGCGCAGGCCTGAACCGAACAGAACAAGACGAgg                                                                           >  8:281164/1‑148 (MQ=255)                                                                                 aaCCTGCCACTGCAACTCAATTTCATCGCCTTTGCCATCCCTGGCGCCATCGCTGCGCTGGCCATGGCCGTGCACCTGGCCAGTGGTCGGCGCCACGCCCAGACCCTGGCGGCGCAGGCCTGAACCGAACAGAACAAGACGAGGTAAcc                                                                      <  1:328194/149‑1 (MQ=255)                                                                                   ccTGCCACTGCAACTCAATTTCATCGCCTTTGCCATCCCTGGCGCCATCGCTGCGCTGGCCATGGCCGTGCACCTGGCCAGTGGTCGGCGCCACGCCCAGACCCTGGCGGCGCAGGCCTGAACCGAACAGAACAAGACGAGGTAAcccc                                                                    >  3:51463/1‑149 (MQ=255)                                                                                         aCTGCAACTCAATTTCATCGCCTTTGCCATCCCTGGCGCCATCGCTGCGCTGGCCATGGCCGTGCACCTGGCCAGTGGTCGGCGCCACGCCCAGACCCTGGCGGCGCAGGCCTGAACCGAACAGAACAAGACGAGGTAACCCCCAAGAc                                                              >  7:229497/1‑149 (MQ=255)                                                                                           tGCAACTCAATTTCATCGCCTTTGCCATCCCTGGCGCCATCGCTGCGCTGGCCATGGCCGTGCACCTGGCCAGTGGTCGGCGCCACGCCCAGACCCTGGCGGCGCAGGCCTGAAcc                                                                                             >  8:31248/1‑116 (MQ=255)                                                                                           tGCAACTCAATTTCATCGCCTTTGCCATCCCTGGCGCCATCGCTGCGCTGGCCATGGCCGTGCACCTGGCCAGTGGTCGGCGCCACGCCCAGACCCTGGCGGCGCAGGCCTGAAcc                                                                                             <  7:31248/116‑1 (MQ=255)                                                                                             cAACTCTATTTCATCGCCTTTGCCATCCCTGGCGCCATCGCTGCGCTGGCCATGGCCGTGCACCTGGCCAGTGGTCGGCGCCACGCCCAGACCCTGGCGGCGCAGGCCTGAACCGAACAGAACAAGACGAGGTAACCCCCATGACCGt                                                           <  5:290233/148‑1 (MQ=255)                                                                                             cAACTCAATTTCATCGCCTTTGCCATCCCTGGCGCCATCGCTGCGCTGGCCATGGCCGTGCACCTGGCCAGTGGTCGGCGCCACGCCCAGACCCTGGCGGCGCAGGCCTGAACCGAACAGAACAAGACGAGGTAACCCCCATGACCGt                                                           <  7:199222/148‑1 (MQ=255)                                                                                              aaCTCAATTTCATCGCCTTTGCCATCCCTGGCGCCATCGCTGCGCTGGCCATGGCCGTGCACCTGGCCAGTGGTCGGCGCCACGCCCAGACCCTGGCGGCGCAGGCCTGAACCGAACAGAACAAGACGAGGTAACCCCCATGACCGTg                                                          >  5:367331/1‑148 (MQ=255)                                                                                                   aaTTTCATCGCCTTTGCCATCCCTGGCGCCATCGCTGCGCTGGCCATGGCCGTGCACCTGGCCAGTGGTCGGCGCCACGCCCAGACCCTGGCGGCGCAGGCCTGAACCGAACAGAACAAGACGAGGTAACCCCCATGACCGTGAACagt                                                    >  4:116509/1‑147 (MQ=255)                                                                                                   aaTTTCATCGCCTTTGCCATCCCTGGCGCCATCGCTGCGCTGGCCATGGCCGTGCACCTGGCCAGTGGTCGGCGCCACGCCCAGACCCTGGCGGCGCAGGCCTGAACCGAACAGAACAAGACGAGGTAACCCCCATGACCGTGAACAtt                                                    >  8:210896/1‑149 (MQ=255)                                                                                                     tttCATCGCCTTTGCCATCCCTGGCGCCATCGCTGCGCTGGCCATGGCCGTGCACCTGGACAGTGGTCGGCGCCACGCCCAGACCCTGGCGGCGCAGGCCTGAACCGAACAGAACAAGACGAGGTAACCCCCATGACCGTGAACATTTc                                                  >  2:54476/1‑149 (MQ=255)                                                                                                          tCGCCTTTGCCATCCCTGGCGCCATCGCTGCGCTGGCCATGGCCGTGCACCTGGCCAGTGGTCGGCGCCACGCCCAGACCCTGGCGGCGCAGGCCTGAACCGAACAGAACAAGACGCGGTACCCCCCATGACCGAGAACATTTCCCaaa                                             >  3:210845/1‑147 (MQ=255)                                                                                                          tCGCCTTTGCCATCCCTGGCGCCATCGCTGCGCTGGCCATGGCCGTGCACCTGGCCAGTGGTCGGCGCCACGCCCAGACCCTGGCGGCGCAGGCCTGAACCGAACAGAACAAGACGAGGTAACCCCCATGACCGTGAACATTTCCCAt                                              >  1:382834/1‑148 (MQ=255)                                                                                                          tCGCCTTTGCCATCCCTGGCGCCATCGCTGCGCTGGCCATGGCCGTGCACCTGGCCAGTGGTCGGCGCCACGCCCAGACCCTGGCGGCGCAGGCCTGAACCGAACAGAACAAGACGAGGTAACCCCCATGACCGTGAACATTTCCCATa                                             >  1:98055/1‑149 (MQ=255)                                                                                                          tCGCCTTTGCCATCCCTGGCGCCATCGCTGCGCTGGCCATGGCCGTGCACCTGGCCAGTGGTCGGCGCCACGCCCAGACCCTGGCGGCGCAGGCCTGAACCGAACAGAACAAGACGAGGTAACCCCCATGACCGTGAACATTTCCCATa                                             <  5:107720/149‑1 (MQ=255)                                                                                                             gctcccccATCCCTGGCGCCATCGCTGCGCTGGCCATGGCCGTGCACCTGGCCAGTGGTCGGCGCCACGCCCAGACCCTGGCGGCGCAGGCCTGAACCGAACAGAACAAGACGAGGTAACCCCCATGACCGTGAACATTTCCCATAc                                            <  1:135316/141‑1 (MQ=255)                                                                                                                   ccATCCCTGGCGCCATCGCTGCGCTGGCCATGGCCGTGCACCTGGCCAGTg                                                                                                                                      <  5:374188/51‑1 (MQ=255)                                                                                                                   ccATCCCTGGCGCCATCGCTGCGCTGGCCATGGCCGTGCACCTGGCCAGTg                                                                                                                                      >  6:374188/1‑51 (MQ=255)                                                                                                                   ccATCCCTGGCGCCATCGCTGCGCTGGCCATGGCCGTGCACCTGGCCAGTGGTCGGCGCCACGCCCAGACCCTGGCGGCGCAGGCCTGAACCGAACAGAACAAGACGAGGTAACCCCCATGACCGTGAACATTTCCCATACTGCCGAg                                     <  2:382834/148‑1 (MQ=255)                                                                                                                    cATCCCTGGCGCCATCGCTGCGCTGGCCATGGCCGTGCACCTGGCCAGTGGTCGGCGCCACGCACAGACCCTGGCGGCGCAGGCCTGACCCGAACAGAACACGACGAGGTAACCCCCATGACCGGGACCATTTCCCATACTGCCGCggg                                   >  8:151124/1‑148 (MQ=255)                                                                                                                      tCCCTGGCGCCATCGCTGCGCTGGCCATGGCCGTGCACCTGGCCAGTGGTCGGCGCCACGCCCAGACCCTGGCGGCGCAGGCCTGAACCGAACAGAACAAGACGAGGTAACCCCCATGACCGTGAACATTTCCCATACTGCCGAGGTAc                                 <  7:281164/149‑1 (MQ=255)                                                                                                                        ccTGGCGCCATCGCTGCGCTGGCCATGGCCGTGCACCTGGCCAGTGGTCGGCGCCACGCCCAGACCCTGGCGGCGCAGGCCTGAACCGAACAGAACAAGACGAGGTAACCCCCATGACCGTGAACATTTCCCATACTGCCGAGGTAcag                               <  5:300784/149‑1 (MQ=255)                                                                                                                        ccTGGCGCCATCGCTGCGCTGGCCATGGCCGTGCACCTGGCCAGTGGTCGGCGCCACGCCCAGACCCTGGCGGCGCAGGCCTGAACCGAACAGAACAAGACGAGGTAACCCCCATGACCGTGAACATTTCCCATACTGCCGAGGTAcag                               >  2:299590/1‑149 (MQ=255)                                                                                                                         cTGGCGCCATCGCTGCGCTGGCCATGGCCGTGCACCTGGCCAGTGGTCGGCGCCACGCCCAGACCCTGGCGGCGCAGGCCTGAACCGAACAGAACAAGACGAGGTAACCCCCATGACCGTGAACATTTCCCATACTGCCGAGGTAcagc                              <  7:151124/149‑1 (MQ=255)                                                                                                                            gcgcCATCGCTGCGCTGGCCATGGCCGTGCACCTGGCCAGTGGTCGGCGCCACGCCCAGACCCTGGCGGCGCAGGCCTGAACCGAACAGAACAAGACGAGGTAACCCCCATGACCGTGAACATTTCCCATACTGCCGAGGTACAGCAGt                           <  2:283070/149‑1 (MQ=255)                                                                                                                                  tCGCTGCGCTGGCCATGGCCGTGCACCTGGCCAGTGGTCGGCGCCACGCCCAGACCCTGGCGGCGCAGGCCTGAACCGAACAGAACAAGACGAGGTAACCCCCATGACCGTGAACATTTCCCATACTGCCGAGGTACAGCAGTTCTTCg                     <  2:384429/149‑1 (MQ=255)                                                                                                                                           tgGCCATGGCCGTGCACCTGGCCAGTGGTCGGCGCCACGCCCAGACCCTGGCGGCGCAggccatggccagcgcagcgatggcgccagggatggcaaaggcgatgaaattgagttgcagtggcaggttgatgcccatcagcgcaccgcc             <  3:49488‑M2/148‑91 (MQ=255)                                                                                                                                             gCCATGGCCGTGCACCTGGCCAGTGGTCGGCGCCACGCCCAGACCCTGGCGGCGCAGGCCTGAACCGAACAGAACAAGACGAGGTAACCCCCATGACCGTGAACATTTCCCATACTGCCGAGGTACAGCAGTTCTTCGAGCAGGCCGCa          <  5:173806/149‑1 (MQ=255)                                                                                                                                              ccATGGCCGTGCACCTGGCCAGTGGTCGGCGCCACGCCCAGACCCTGGCGGCGCAggccatggccagcgcagcgatggcgccagggatggcaaaggcgatgaaattgagttgcagtggcaggttgatgcccatcagcgcaccgcccag          <  4:316839‑M2/148‑94 (MQ=255)                                                                                                                                                   gCCGTGCACCTGGCCAGTGGTCGGCGCCACGCCCAGACCCTGGCGGCGCAGGCCTGAACCGAACAGAACAAGACGAGGTACCCCCCATGACCGTGAACATTTCCCATACTGCCGAGGTACAGCAGTTCTTCGAGCAGGCCGCAGGCttt    >  1:355928/1‑149 (MQ=255)                                                                                                                                                   gCCGTGCACCTGGCCAGTGGTCGGCGCCACGCCCAGACCCTGGCGGCGCAGGCCTGAACCGAACAGAACAAGACGAGGTAACCCCCATGACCGTGAACATTTCCCATACTGCCGAGGTACAGCAGTTCTTCGAGCAGGCCGCAGGCtt     <  1:299590/148‑1 (MQ=255)                                                                                                                                                    ccGTGCACCTGGCCAGTGGTCGGCGCCACGCCCAGACCCTGGCGGCGCAGGCCTGAACCGAACAGAACAAGACGAGGTAACCCCCATGACCGTGAACATTTCCCATACTGCCGAGGTACAGCAGTTCTTCGAGCAGGCCGCAGGCtttt   >  1:203414/1‑149 (MQ=255)                                                                                                                                                    ccGTGCACCTGGCCAGTGGTCGGCGCCACGCCCAGACCCTGGCGGCGCAGGCCTGAACCGAACAGAACAAGACGAGGTAACCCCCATGACCGTGAACATTTCCCATACTGCCGAGGTACAGCAGTTCTTCGAGCAGGCCGCAGGCtttt   <  1:184606/149‑1 (MQ=255)                                                                                                                                                     cGTGCACCTGGCCAGTGGTCGGCGCCACGCCCAGACCCTGGCGGCGCAggccatggccagcgcagcgatggcgccagggatggcaaaggcgatgaaattgagttgcagtggcaggttgatgcccatcagcgcaccgcccagcagcgggc  >  3:316839‑M2/1‑48 (MQ=255)                                                                                                                                                     cGTGCACCTGGCCAGTGGTCGGCGCCACGCCCAGACCCTGGCGGCGCAGGCCTGAACCGAACAGAACAAGACGAGGTAACCCCCATGACCGTGAACATTTCCCATACTGCCGAGGTACAGCAGTTCTTCGAGCAGGCCGCAGGCTTTTg  <  1:54476/149‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                                     CCGGCCTGGGCTGGGCCTCGGGCATCGGCCGTAATGGCGCCATCGTCGGCCCGCTGCTGGGCGGTGCGCTGATGGGCATCAACCTGCCACTGCAACTCAATTTCATCGCCTTTGCCATCCCTGGCGCCATCGCTGCGCTGGCCATGGCCGTGCACCTGGCCAGTGGTCGGCGCCACGCCCAGACCCTGGCGGCGCAGGCCTGAACCGAACAGAACAAGACGAGGTAACCCCCATGACCGTGAACATTTCCCATACTGCCGAGGTACAGCAGTTCTTCGAGCAGGCCGCAGGCTTTTG  >  NC_002947/3586933‑3587229

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.