New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2390927	44 (0.710)	4 (0.070)	4/252	NT	8.7%	coding (1788/2238 nt)	rlmKL	23S rRNA (guanine(2445)‑N(2))/(guanine(2069)‑N(7))‑ methyltransferase
	?	NC_002947	= 2390951	42 (0.720)					coding (1812/2238 nt)	rlmKL	23S rRNA (guanine(2445)‑N(2))/(guanine(2069)‑N(7))‑ methyltransferase

CTGCTGGTCAACCTCACCGACTACCTGGATACCGGGCTGTTCCTCGACCACCGCCCGATGCGTATGCGCATCCAGCGCGAGGCTGCCGGCAAGCGCTTCCTCAACCTGTTCTGCTACACCGCCACGGCCACCGTGCACGCGGCCAAGGGCGGTGCGCGC‑AGCACCACCAGCGTCGACCTGTCGAAAACCTACCTGGACTGGGCACGGCGTAACCTGGCGCTCAATGGCTATTCCGAGCGCAACCGCCTGGAGCAGAGCGATGTAATGACCTGGCTGGAAGGCAACCGTGA  >  NC_002947/2390805‑2391094                                                                                                                                                   |                                                                                                                                                 ctgctgGTCAACCTCACCGACTACCTGGATACCGGGCTGTTCCTCGACCACCGCCCGATGCGTATGCGCATCCAGCGCGAGGCTGCCGGCAAGCGCTTCCTCAACCTGTTCTGCTACACCGCCACGGCCACCGTGCACGCGGCCAAGgg                                                                                                                                                <  1:378011‑M2/149‑3 (MQ=255)    ctgGTCAACCTCACCGACTACCTGGATACCGGGCTGTTCCTCGACCACCGCCCGATGCGTATGCGCATCCAGCGCGAGGCTGCCGGCAAGCGCTTCCTCAACCTGTTCTGCTACACCGCCACGGCCACCGTGCACGCGGCCAAGggcg                                                                                                                                              >  6:378524‑M2/1‑144 (MQ=255)       gTCAACCTCACCGACTACCTGGATACCGGGCTGTTCCTCGACCACCGCCCGATGCGTATGCGCATCCAGCGCGAGGCTGCCGGCAAGCGCTTCCTCAACCTGTTCTGCTACACCGCCACGGCCACCGTGCACGCGGCCAAGggcggt                                                                                                                                            >  7:146727‑M2/1‑141 (MQ=255)        tCAACCTCACCGACTACCTGGATACCGGGCTGTTCCTCGACCACCGCCCGATGCGTATGCGCATCCAGCGCGAGGCTGCCGGCAAGCGCTTCCTCAACCTGTTCTGCTACACCGCCACGGCCACCGTGCACGCGGCCAAGGGCGGTgcg                                                                                                                                         >  5:291403/1‑149 (MQ=255)                aCCGACTACCTGGATACCGGGCTGTTCCTCGACCACCGCCCGATGCGTATGCGCATCCAGCGCGAGGCTGCCGGCAAGCGCTTCCTCAACCTGTTCTGCTACACCGCCACGGCCACCGTGCACGCGGCCAAGGGCGGTGCGCGC‑AGcac                                                                                                                                >  7:278898/1‑149 (MQ=255)                        ccTGGATACCGGGCTGTTCCTCGACCACCGCCCGATGCGTATGCGCATCCAGCGCGAGGCTGCCGGCAAGCGCTTCCTCAACCTGTTCTGCTACACCGCCACGGCCACCGTGCACGCGGCCAAGGGCGGTGCGCGC‑AGCACCACCAGCg                                                                                                                        >  3:335477/1‑149 (MQ=255)                         cTGGATACCGGGCTGTTCCTCGACCACCGCCCGATGCGTATGCGCATCCAGCGCGAGGCTGCCGGCAAGCGCTTCCTCACCCTGTTCTGCTACACCGCCACGGCCACCGTGCACGCGGCCAAGGGCGGTGCGCGC‑AGCACCACCAGCGt                                                                                                                       >  8:272382/1‑149 (MQ=255)                         cTGGATACCGGGCTGTTCCTCGACCACCGCCCGATGCGTATGCGCATCCAGCGCGAGGCTGCCGGCAAGCGCTTCCTCAACCTGTTCTGCTACACCGCCACGGCCACCGTGCACGCGGCCAAGGGCGGTGCGCGC‑AGCACCACCAGCGt                                                                                                                       >  6:215717/1‑149 (MQ=255)                            gATACCGGGCTGTTCCTCGACCACCGCCCGATGCGTATGCGCATCCAGCGCGAGGCTGCCGGCAAGCGCTTCCTCAACCTGTTCTGCTACACCGCCACGGCCACCGTGCACGCGGCCAAGGGCGGTGCGCGC‑AGCACCACCAGCGTCg                                                                                                                     <  8:180096/148‑1 (MQ=255)                            gATACCGGGCTGTTCCTCGACCACCGCCCGATGCGTATGCGCATCCAGCGCGAGGCTGCCGGCAAGCGCTTCCTCAACCTGTTCTGCTACACCGCCACGGCCACCGTGCACGCGGCCAAGGGCGGTGCGCGC‑AGCACCACCAGCGTCg                                                                                                                     >  7:180096/1‑148 (MQ=255)                               aCCGGGCTGTTCCTCGACCACCGCCCGAAGCGTATGCGCATCCAGCGCGACGCTGCCGGCAAGCGCTTCCTCAACCTGTTCTGCTACACCGCCACGGCCACCGTGCACGCGGCCAAGGGCGGTGCGCGC‑AGCACCACCAGCGTCGACCt                                                                                                                 >  5:214819/1‑149 (MQ=255)                                        ttCCTCGACCACCGCCCGATGCGTATGCGCATCCAGCGCGAGGCTGCCGGCAAGCGCTTCCTCAACCTGTTCTGCTACACCGCCACGGCCACCGTGCACGCGGCCAAGGGCGGTGCGCGC‑AGCACCACCAGCGTCGACCTGTCGaaaa                                                                                                         <  5:96278/148‑1 (MQ=255)                                            tCGACCACCGCCCGATGCGTATGCGCATCCAGCGCGAGGCTGCCGGCAAGCGCTTCCTCAACCTGTTCTGCTACACCGCCACGGCCACCGTGCACGCGGCCAAGGGCGGTGCGCGC‑AGCACCACCAGCGTCGACCTGTCGAAAacctac                                                                                                    >  3:353013/1‑149 (MQ=255)                                                  accGCCCGATGCGTATGCGCATCCAGCGCGAGGCTGCCGGCAAGCGCTTCCTCAACCTGTTCTGCTACACCGCCACGGCCACCGTGCACGCGGCCAAGGGCGGTGCGCGC‑AGCACCACCAGCGTCGACCTGTCGAAAACCTACCTGGAc                                                                                              <  6:121374/149‑1 (MQ=255)                                                    cGCCCGATGCGTATGCGCATCCAGCGCGAGGCTGCCGGCAAGCGCTTCCTCAACCTGTTCTGCTACACCGCCACGGCCACCGTGCACGCGGCCAAGGGCGGTGCGCGC‑AGCACCACCAGCGTCGACCTGTCGAAAACCTACCTGGACTg                                                                                            <  4:353013/149‑1 (MQ=255)                                                          aTGCGTATGCGCATCCAGCGCGAGGCTGCCGGCAAGCGGTTCCTCAACCTGTTCTGCTACAACGCCACGGCCACCGTGCACGCGGCCAAGGGCGGTTCGCGC‑AGCACCACCAGCGTCGACCTGTCGAAAACCTACCTGGACTGGGCACg                                                                                      >  3:117050/1‑149 (MQ=255)                                                          aTGCGTATGCGCATCCAGCGCGAGGCTGCCGGCAAGCGCTTCCTCAACCTGTTCTGCTACACCGCCACGGCCACCGTGCACGCGGCCAAGGGCGGTGCGCGC‑AGCACCACCAGCGTCGACCTGTCGAAAACCTACCTGGACTGGGCACg                                                                                      <  1:385467/149‑1 (MQ=255)                                                                 tGCGCATCCAGCGCGAGGCTGCCGGCAAGCGCTTCCTCAACCTGTTCTGCTACACCGCCACGGCCACGGTGCACGCGGCCAAGGGCGGTGCGCGC‑AGCACCACCAGCGTCGACCTGTCGAAAACCTACCTGGACTGGGCACGGCGTAAc                                                                               <  6:214819/149‑1 (MQ=255)                                                                    gcATCCAGCGCGAGGCTGCCGGCAAGCGCTTCCTCACCCTGTTCTGCTACACCGCCACGGCCACCGTGCACGCGGCCAAGGGCGGTGCGCGC‑AGCACCACCAGCGTCGACCTGTCGAAAACCTACCTGGACTGGGCACGGCGTAACCTg                                                                            <  7:272382/149‑1 (MQ=255)                                                                       tCCAGCGCGAGGCTGCCGGCAAGCGCTTCCTCAACCTGTTCTGCTACACCGCCACGGCCACCGTGCACGCGGCCAAGGGCGGTGCGCGC‑AGCACCACCAGCGTCGACCTGTCGAAAACCTACCTGGACTGGGCACGGCGTAACCTGgcg                                                                         >  7:118338/1‑149 (MQ=255)                                                                          aGCGCGAGGCTGCCGGCAAGCGCTTCCTCAACCTGTTCTGCTACACCGCCACGGCCACCGTGCACGCGGCCAAGGGCGGTGCGCGC‑AGCACCACCAGCGTCGACCTGTCGAAAACCTACCTGGACTGGGCACGGCGTAACCTGGCGCt                                                                       >  8:239384/1‑148 (MQ=255)                                                                                   cTGCCGGCAAGCGCTTCCTCAACCTGTTCTGCTACACCGCCACGGCCACCGTGCACGCGGCCAAGGGCGGTGCGCGC‑AGCACCACCAGCGTCGACCTGTCGAAAACCTACCTGGACTGGGCACGGCGTAACCTGGCGCTCAATGGCTAt                                                             >  4:320238/1‑149 (MQ=255)                                                                                      ccGGCAAGCGCTTCCTCAACCTGTTCTGCTACACCGCCACGGCCACCGTGCACGCGGCCAAGGGCGGTGCGCGC‑AGCACCACCAGCGTCGACCTGTCGAAAACCTACCTGGACTGGGCACGGCGTAACCTGGCGCTCAATGGCTATTcc                                                          >  5:15659/1‑149 (MQ=255)                                                                                      ccGGCAAGCGCTTCCTCAACCTGTTCTGCTACACCGCCACGGCCACCGTGCACGCGGCCAAGGGCGGTGCGCGC‑AGCACCACCAGCGTCGACCTGTCGAAAACCTACCTGGACTGGGCACGGCGTAACCTGGCGCTCAATGGCTATTcc                                                          <  8:30780/149‑1 (MQ=255)                                                                                          cAAGCGCTTCCTCAACCTGTTCTGCTACACCGCCACGGCCACCGTGCACGCGGCCAAGGGCGGTGCGCGC‑AGCACCACCAGCGTCGACCTGTCGAAAACCTACCTGGACTGGGCACGGCGTAACCTGGCGCTCAATGGCTATTCCGAgc                                                      <  6:291403/149‑1 (MQ=255)                                                                                          cAAGCGCTTCCTCAACCTGTTCTGCTACACCGCCACGGCCACCGTGCACGCGGCCAAGGGCGGTGCGCGC‑AGCACCACCAGCGTCGACCTGTCGAAAACCTACCTGGACTGGGCACGGCGTAACCTGGCGCTCAATGGCTATTCCGAgc                                                      <  5:215717/149‑1 (MQ=255)                                                                                             gcgcTTCCTCAACCTGTTCTGCTACACCGCCACGGCCACCGTGCACGCGGCCAAGGGCGGTGCGCGC‑AGCACCACCAGCGTCGACCTGTCGAAAACCTACCTGGACTGGGCACGGCGTAACCTGGCGCTCAATGGCTATTCCGAgcgc                                                    >  8:220578/1‑148 (MQ=255)                                                                                                   ccTCAACCTGTTCTGCTACACCGCCACGGCCACCGTGCACGCGGCCAAGGGCGGTGCGCGC‑AGCACCACCAGCGTCGACCTGTCGAAAACCTACCTGGACTGGGCACGGCGTAACCTGGCGCTCAATGGCTATTCCGa                                                        >  7:113435/1‑138 (MQ=255)                                                                                                   ccTCAACCTGTTCTGCTACACCGCCACGGCCACCGTGCACGCGGCCAAGGGCGGTGCGCGC‑AGCACCACCAGCGTCGACCTGTCGAAAACCTACCTGGACTGGGCACGGCGTAACCTGGCGCTCAATGGCTATTCCGa                                                        <  8:113435/138‑1 (MQ=255)                                                                                                   ccTCAACCTGTTCTGCTACACCGCCACGGCCACCGTGCACGCGGCCAAGGGCGGTGCGCGC‑AGCACCACCAGCGTCGACCTGTCGAAAACCTACCTGGACTGGGCACGGCGTAACCTGGCGCTCAATGGCTATTCCGAGCGCAACCGcc                                             >  1:199972/1‑149 (MQ=255)                                                                                                     tCAACCTGTTCTGCTACACCGCCACGGCCACCGTGCACGCGGCCAAGGGCGGTGCGCGC‑AGCACCACCAGCGTCGACCTGTCGAAAACCTACCTGGACTGGGCACGGCGTAACCTGGCGCTCAATGGCTATTCCGAGCGCAACCGCCTg                                           >  4:268266/1‑149 (MQ=255)                                                                                                     tCAACCTGTTCTGCTACACCGCCACGGCCACCGTGCACGCGGCCAAGGGCGGTGCGCGC‑AGCACCACCAGCGTCGACCTGTCGAAAACCTACCTGGACTGGGCACGGCGTAACCTGGCGCTCAATGGCTATTCCGAGCGCAACCGCCTg                                           >  2:94093/1‑149 (MQ=255)                                                                                                       aaCCTGTTCTGCTACACCGCCACGGCCACCGTGCACGCGGCCAAGGGCGGTGCGCGC‑AGCACCACCAGCGTCGACCTGTCGAAAACCTACCTGGACTGGGCACGGCGTAACCTGGCGCTCAATGGCTATTCCGAGCGCAACCGCCTg                                           <  8:118338/147‑1 (MQ=255)                                                                                                       aaCCTGTTCTGCTACACCGCCACGGCCACCGTGCACGCGGCCAAGGGCGGTGCGCGC‑AGCACCACCAGCGTCGACCTGTCGAAAACCTACCTGGACTGGGCACGGCGTAACCTGGCGCTCAATGGCTATTCCGAGCGCAACCGCCTg                                           >  7:73238/1‑147 (MQ=255)                                                                                                       aaCCTGTTCTGCTACACCGCCACGGCCACCGTGCACGCGGCCAAGGGCGGTGCGCGC‑AGCACCACCAGCGTCGACCTGTCGAAAACCTACCTGGACTGGGCACGGCGTAACCTGGCGCTCAATGGCTATTCCGAGCGCAACCGCCTg                                           >  7:78477/1‑147 (MQ=255)                                                                                                           tGTTCTGCTACACCGCCACGGCCACCGTGCACGCGGCCAAGGGCGGTGCGCGCTTGCACCACCAGCGTCGACCTGTCGAAAACCTACCTGGACTGGGCACGGCGTAACCTGGCGCTCAATGGCTATTCCGAGCGCAACCGCCTGGAg                                        >  1:101258/1‑147 (MQ=255)                                                                                                             ttCTGCTACACCGCCACGGCCACCGTGCACGCGGCCAAGGGCGGTGCGCGC‑AGCACCACCAGCGTCGACCTGTAGAAAACCTACCTGGACTGGGCACGGCGTAACCTGGCGCTCAATGTCTATTCCGAGCGCAACCGCCTGGAGCagag                                   <  6:35617/149‑1 (MQ=255)                                                                                                               ccgatctaccgccacgGCCACCGTGCACGCGGCCAAGggcggtttagcagaacaggttgaggaagcgcttgccggcagcctcgcgctggatgcgcatacgcatcgggcggtggtcgaggaacagcccggtatccaggtagtcggtgagg                                  >  3:77678‑M2/8‑37 (MQ=255)                                                                                                                tGCTACACCGCCACGGCCACCGTGCACGCGGCCAAGggcggtgtagcagaacaggttgaggaagcgcttgccggcagcctcgcgctggatgcgcatacgcatcgggcggtggtcgaggaacagcccggtatccaggtagtcggtgaggt                                 <  3:225052‑M2/149‑114 (MQ=255)                                                                                                                  cTACACCGCCACGGCCACCGTGCACGCGGCCAAGGGCGGTGCGCGC‑AGCACCACCAGCGTCGACCTGTCGAAAACCTACCTGGACTGGGCACGGCGTAACCTGGCGCTCAATGGCTATTCCGAGCGCAACCGCCTGGAGCAGAGCGATg                              <  3:73955/149‑1 (MQ=255)                                                                                                                   tACACCGCCACGGCCACCGTGCACGCGGCCAAGggcggtgtagcagaacaggttgaggaagcgcttgccggcagcctcgcgctggatgcgcatacgcatcgggcggtggtcgaggaacagcccggtatccaggtagtcggtgaggttga                              <  3:84795‑M2/149‑117 (MQ=255)                                                                                                                   tACACCGCCACGGCCACCGTGCACGCGGCCAAGGGCGGTGCGCGC‑AGCACCACCAGCGTCGACCTGTCGAAAACCTACCTGGACTGGGCACGGCGTAACCTGgcg                                                                         >  8:77765/1‑105 (MQ=255)                                                                                                                   tACACCGCCACGGCCACCGTGCACGCGGCCAAGGGCGGTGCGCGC‑AGCACCACCAGCGTCGACCTGTCGAAAACCTACCTGGACTGGGCACGGCGTAACCTGgcg                                                                         <  7:77765/105‑1 (MQ=255)                                                                                                                   tACACCGCCACGGCCACCGTGCACGCGGCCAAGGGCGGTGCGCGC‑AGCACCACCAGCGTCGACCTGTCGAAAACCTACCTGGACTGGGCACGGCGTAACCTGGCGCTCAATGGCTATTCCGAGCGCAACCGCCTGGAGCAGAGCGATg                              >  3:267883/1‑148 (MQ=255)                                                                                                                      acCGCCACGGCCACCGTGCACGCGGCCAAGGGCGGTGCGCGC‑AGCACCACCAGCGTCGACCTGTCGAAAACCTACCTGGACTGGGCACGGCGTAACCTGGCGCTCAATGGCTATTCCGAGCGCAACCGCCTGGAGCAGAGCGATGTAAt                          <  4:335477/149‑1 (MQ=255)                                                                                                                       ccGCCACGGCCACCGTGCACGCGGCCAAGggcggtgtagcagaacaggttgaggaagcgcttgccggcagcctcgcgctggatgcgcatacgcatcgggcggtggtcgaggaacagcccggtagccaggtagtcggtgagg                                  <  4:77678‑M2/141‑113 (MQ=255)                                                                                                                            aCGGCCACCGTGCACGCGGCCAAGGGCGGTGCGCGC‑AGCACCACCAGCGTCGACCTGTCGAAAACCTACCTGGACTGGGCACGGCGTAACCTGGCGCTCAATGGCTATTCCGAGCGCAACCGTCTGGAGCAGAGCGATGTAATGACctg                    <  2:378011/149‑1 (MQ=255)                                                                                                                                    cGTGCACGCGGCCAAGGGCGGTGCGCGC‑AGCACCACCAGCGTCGACCTGTCGAAAACCTACCTGGACTGGGCACGGCGTAACCTGGCGCTCAATGGCTATTCCGAGCGCAACCGCCTGGAGCAGAGCGATGTAATGACCTGGCTGGAAg            >  8:199016/1‑149 (MQ=255)                                                                                                                                         aCGCGGCCAAGGGCGGTGCGAGC‑AGCACCACCAGCGTCGACCTGTCGAAAACCTACCTGGACTGGGCACGGCGTAACCTGGCGCTCAATGGCTATTCCGAGCGCAACCGCCTGGAGCAGAGCGATGTAATGACCTGGCTGGAAGGCAAc       <  8:278898/149‑1 (MQ=255)                                                                                                                                              gCCAAGGGCGGTGCGCGC‑AGCACCACCAGCGTCGACCTGTCGAAAACCTACCTGGACTGGGCACGGCGTAACCTGGCGCTCAATGGCTATTCCGAGCGCAACCGCCTGGAGCAGAGCGATGTAATGACCTGGCTGGAAGGCAACCGTGa  <  7:239384/149‑1 (MQ=255)                                                                                                                                                cAAGGGCGGTGCGCGC‑AGCACCACCAGCGTCGACCTGTCGAAAACCTACCTGGACTGGGCACGGCGTAACCTGGCGCTCAATGGCTATTCCGAGCGCAACCGCCTGGAGCAGAGCGATGTAATGAcc                      <  2:205964/127‑1 (MQ=255)                                                                                                                                                cAAGGGCGGTGCGCGC‑AGCACCACCAGCGTCGACCTGTCGAAAACCTACCTGGACTGGGCACGGCGTAACCTGGCGCTCAATGGCTATTCCGAGCGCAACCGCCTGGAGCAGAGCGATGTAATGAcc                      >  1:205964/1‑127 (MQ=255)                                                                                                                                                cAAGGGCGGTGCGCGC‑AGCACCACCAGCGTCGACCTGTCGAAAACCTACCTGGACTGGGCACGGCGTAACCTGGCGCTCAATGGCTATTCCGAGCGCAACCGCCTGGAGCAGAGCGATGTAATGACCTGGCTGGAAGGCAACCGTGa  >  1:56414/1‑147 (MQ=255)                                                                                                                                                   |                                                                                                                                                 CTGCTGGTCAACCTCACCGACTACCTGGATACCGGGCTGTTCCTCGACCACCGCCCGATGCGTATGCGCATCCAGCGCGAGGCTGCCGGCAAGCGCTTCCTCAACCTGTTCTGCTACACCGCCACGGCCACCGTGCACGCGGCCAAGGGCGGTGCGCGC‑AGCACCACCAGCGTCGACCTGTCGAAAACCTACCTGGACTGGGCACGGCGTAACCTGGCGCTCAATGGCTATTCCGAGCGCAACCGCCTGGAGCAGAGCGATGTAATGACCTGGCTGGAAGGCAACCGTGA  >  NC_002947/2390805‑2391094

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.