New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4087372	42 (0.680)	4 (0.070)	4/244	NT	8.8%	intergenic (+21/‑405)	PP_3597/PP_3598	amino acid ABC transporter ATP‑binding protein/peptidase C26
	?	NC_002947	= 4087442	44 (0.770)					intergenic (+91/‑335)	PP_3597/PP_3598	amino acid ABC transporter ATP‑binding protein/peptidase C26

TTCAACCAGCCGCGCACCGAGCGGGCCAAGGCGTTTTTGGCGCAGATCCTGCACTGATTGAAAGCCTGTCACTGTGGGGGGTTTACCCGCGAAGAAGACACCGCCGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCAAGCCCACTCCCACAGTGACCGAGGTTACTTCAAGTTACCTAATCATTGCGCCGCTGCAATGACCCAACTGCATCGTTAAATATTATTGACCGCAGACCCTGCCAAACCCACGCCGCCACAGGCCCGCATCGGTTTCAGCCCCCAGAAAACGGC  >  NC_002947/4087295‑4087587                                                                                                                                                    |                                                                                                                                                  ttCAACCAGCCGCGCACCGAGCGGGCCAAGGCGTTTTTGGCGCAGATCCTGCACTGATTGAAAGCCTGTCACTGTGGGGGGTTTACCCGCGAAGAAGACACCGCCGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCAAGCCCACTc                                                                                                                                                  <  6:148314‑M2/149‑2 (MQ=255)      ccAGCCGCGCACCGAGCGGGCCAAGGCGTTTTTGGCGCAGATCCTGCACTGATTGAAAGCCTGTCACTGTGGGGGGTTTACCCGCGAAGAAGACACCGCCGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCAAGCCCACTccca                                                                                                                                               <  2:256016‑M2/147‑5 (MQ=255)         gCCGCGCACCGAGCGGGCCAAGGCGTTTTTGGCGCAGATCCTGCACTGATTGAAAGCCTGTCACTGTGGGGGGTTTACCCGCGAAGAAGACACCGCCGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCAAGCCCACTcccacagtg                                                                                                                                          >  2:148669‑M2/1‑140 (MQ=255)                    aGCGGGCCAAGGCGTTTTTGGCGCAGATCCTGCACTGATTGAAAGCCTGTCACTGTGGGGGGTTTACCCGCGAAGAAGACACCGCCGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCAAGCCCACTCCCACAGTGACCGAGGTTa                                                                                                                                <  3:115295/148‑1 (MQ=255)                    aGCGGGCCAAGGCGTTTTTGGCGCAGATCCTGCACTGATTGAAAGCCTGTCACTGTGGGGGGTTTACCCGCGAAGAAGACACCGCCGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCAAGCCCACTCCCACAGTGACCGAGGTTa                                                                                                                                >  4:115295/1‑148 (MQ=255)                       gggCCAAGGCGTTTTTGGCGCAGATCCTGCACTGATTGAAAGCCTGTCACTGTGGGGGGTTTACCCGCGAAGAAGACACCGCCGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCAAGCCCACTCCCACAGTGACCGAGGTTACTTc                                                                                                                            <  8:221250/149‑1 (MQ=255)                       gggCCAAGGCGTTTTTGGCGCAGATCCTGCACTGATTGAAAGCCTGTCACTGTGGGGGGTTTACCCGCGAAGAAGACACCGCCGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCAAGCCCACTCCCACAGTGACCGAGGTTACTTc                                                                                                                            <  8:319198/149‑1 (MQ=255)                         cccAAGGCGATTTTGGCGCAGATCCTGCACTGATTGAAAGCCTGTCACTGTGGGGGGTTTACCCGCGAAGAAGACACCGCCGTGGATAGCACCGGCTTCGCCCGTGTTAGCGGGCAAGCCCACACCCACAGATACAGAGGTTACATCaa                                                                                                                          >  6:233234/2‑149 (MQ=25)                          ccAAGGCGTTTTTGGCGCAGATCCTGCACTGATTGAAAGCCTGTCACTGTGGGGGGTTTACCCGCGAAGAAGACACCGCCGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCAAGCCCACTCCCACAGTGACCGAGGt                                                                                                                                  <  2:333154/140‑1 (MQ=255)                          ccAAGGCGTTTTTGGCGCAGATCCTGCACTGATTGAAAGCCTGTCACTGTGGGGGGTTTACCCGCGAAGAAGACACCGCCGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCAAGCCCACTCCCACAGTGACCGAGGTTagatgggg                                                                                                                         >  1:333154/1‑142 (MQ=255)                          ccAAGGCGTTTTTGGCGCAGATCCTGCACTGATTGAAAGCCTGTCACTGTGGGGGGTTTACCCGCGAAGAAGACACCGCCGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCAAGCCCACTCCCACAGTGACCGAGGTTACTTCAAg                                                                                                                         <  2:244453/149‑1 (MQ=255)                             aGGCGTTTTTGGCGCAGATCCTGCACTGATTGAAAGCCTGTCACTGTGGGGGGTTTACCCGCGAAGAAGACACCGCCGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCAAGCCCACTCCCACAGTGACCGAGGTTACTTCAAGTTa                                                                                                                      >  4:63036/1‑149 (MQ=255)                              ggCGTTTTTGGCGCAGATCCTGCACTGATTGAAAGCCTGTCACTGTGGGGGGTTTACCCGCGAAGAAGACACCGCCGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCAAGCCCACTCCCACAGTGACCGAGGTTACTTCAGGTTAc                                                                                                                     <  5:234897/149‑1 (MQ=255)                               gCGTTTTTGGCGCAGATCCTGCACTGATTGAAAGCCTGTCACTGTGGGGGGTTTACCCGCGAAGAAGACACCGCCGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCAAGCCCACTCCCACAGTGACCGAGGTTACTTCAAGTTAcc                                                                                                                    >  2:239301/1‑149 (MQ=255)                                 gTTTTTGGCGCAGATCCTGCACTGATTGAAAGCCTGTCACTGT‑GGGGGTTTACCCGCGAAGAAGACACCGCCGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCAAGCCCACTCCCACAGTGACCGAGGTTACTTCAAGTTACCTaa                                                                                                                 >  4:355386/1‑149 (MQ=255)                                        gcgcAGATCCTGCACTGATTGAAAGCCTGTCACTGTGGGGGGTTTACCCGCGAAGAAGACACCGCCGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCAAGCCCACTCCCACAGTGACCGAGGTTACTTCAAGTTACCTAATCAtt                                                                                                            <  4:21887/148‑1 (MQ=255)                                        gcgcAGATCCTGCACTGATTGAAAGCCTGTCACTGTGGGGGGTTTACCCGCGAAGAAGACACCGCCGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCAAGCCCACTCCCACAGTGACCGAGGTTACTTCAAGTTACCTAATCAtt                                                                                                            <  1:239301/148‑1 (MQ=255)                                         cgcAGATCCTGCACTGATTGAAAGCCTGTCACTGTGGGGGGTTTACCCGCGAAGAAGACACCGCCGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCAAGCCCACTCCCACAGTGACCGAGGTTACTTCAAGTTACCTAATCATTgc                                                                                                          <  5:148314/149‑1 (MQ=255)                                          gcAGATCCTGCACTGATTGAAAGCCTGTCACTGTGGGGGGTTTACCCGCGAAGAAGACACCGCCGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCAAGCCCACTCCCACAGTGACCGAGGTTACTTCAAGTTACCTAATCATTgcg                                                                                                         >  3:313686/1‑149 (MQ=255)                                                      cTGATGGAAAGCCTGTCCCTGTGGGTGGTTTACCCGCGAAGAAGCCACCGCCGTGGATGGCACGGGCGTCGCCCGTGTTCGCGGGCAAGCCCACTCCCACAGTGACCGAGGTTACTTCAAGTTACCTAATCATTGCGCCGCTGCAATGa                                                                                             <  4:225063/149‑1 (MQ=37)                                                         aTTGAAAGCCTGTCACTGTGGGGGGTTTACCCGCGAAGAAGACACCGCCGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCAAGCCCACTCCCACAGTGACCGAGGTTACTTCAAGTTACCTAATCATTGCGCCGCTGCAATGAcc                                                                                           >  6:19807/1‑148 (MQ=255)                                                          ttGAAAGCCTGTCACTGTGGGGGGTTTACCCGCGAAGAAGACACCGCCGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCAAGCCCACTCCCACAGTGACCGAGGTTACTTCAAGTTACCTAATCATTGCGCCGCTGCAATGAccc                                                                                          >  6:330644/1‑148 (MQ=255)                                                            gAAAGCCTGTCACTGTGGGGGGTTTACCCGCGAAGAAGACACCGCCGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCAAGCCCACTcccacagtgacaggctttcaatcagtgcaggatctgcgccaaaaacgccttggcccgctc                                                                                       <  6:58577‑M2/149‑61 (MQ=255)                                                             aaaGCCTGTCACTGTGGGGGGTTTACCCGCGAAGAAGACACCGCCGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCAAGCCCACTCCCACAGTGACCGAGGTTACTTCAAGTTACCTAATCATTGCGCCGCTGCAATGAcc                                                                                           <  8:204773/144‑1 (MQ=255)                                                             aaaGCCTGTCACTGTGGGGGGTTTACCCGCGAAGAAGACACCGCCGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCAAGCCCACTCCCACAGTGACCGAGGTTACTTCAAGTTACCTAATCATTGCGCCGCTGCAATGAcc                                                                                           >  7:204773/1‑144 (MQ=255)                                                             aaaGCCTGTCACTGT‑GGGGGTTTACCCGCGAAGAAGACACCGCCGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCAAGCCCACTCCCACAGTGACCGAGGTTACTTCAAGTTACCTAATCATTGCGCCGCTGCAATGACCCAACt                                                                                      <  3:355386/148‑1 (MQ=255)                                                                   tGTCACTGTGGGGGGTTTACCCGCGAAGAAGACACCGCCGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCAAGCCCACTCCCACAGTGACCGAGGTTACTTCAAGTTACCTAATCATTGCGCCGCTGCAATGACCCAACTGCATCg                                                                                >  7:83390/1‑149 (MQ=255)                                                                       aCTGTGGGGGGTTTACCCGCGAAGAAGACACCGCCGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCAAGCCCACTcccacagtgacaggctttcaatcagtgcaggatctgcgccaaaaacgccttggcccgctcggtgcgcggct                                                                            <  2:200700‑M2/149‑72 (MQ=255)                                                                           tgGGGGGTTTACCCGCGAAGAAGACTCGTCCGTGGATGGCACGGGCTTCGTCCTTGTTCGCGTGCAAGCCCACTCCCACAGTGACCTAGGTTACTTCAAGTTACCTAATCATTGCGCCGCTACAATGACCCAACTGCATCGTTAAat                                                                          <  5:233234/147‑1 (MQ=37)                                                                              ggggTTTACCCGCGAAGAAGACACCGCCGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCAAGCCCACTCCCACAGTGACCGAGGTTACTTCAAGTTACCTAATCATTGCGCCGCTGCAATGACCCAACTGCATCGTTAAAtattat                                                                     <  3:63036/149‑1 (MQ=255)                                                                                      cccGCGAAGAAGACACCGCCGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCAAGCCCACTCCCACAGTGACCGAGGTTACTTCAAGTTACCTAATCATTGCGCCGCTGCAATGACCCAACTGCATCGTTAAATATTATTGACCg                                                               >  6:254787/1‑147 (MQ=255)                                                                                       ccGCGAAGAAGACACCGCCGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCAAGCCCACTcccacagtgacaggctttcaatcagtgcaggatctgcgccaaaaacgccttggcccgctcggtgcgcggctggttgaagaacacctg                                                            >  5:58577‑M2/1‑62 (MQ=255)                                                                                               aagaCACCGCCGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCAAGCCCACTCCCACAGTGACCGAGGTTACTTCAAGTTACCTAATCATTGCGCCGCTGCAATGACCCAACTGCATCGTTAAATATTATTGACCGCAGACCCTGc                                                     >  5:374629/1‑148 (MQ=255)                                                                                                  acacCGCCGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCAAGCCCACTcccacagtgacaggctttcaatcagtgcaggatctgcgccaaaaacgccttggcccgctcggtgcgcggctggttgaagaacacctgcggcgggctgt                                                 >  1:200700‑M2/1‑51 (MQ=255)                                                                                                   cacCGCCGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCAAGCCCACTCCCACAGTGACCGAGGTTACTTCAAGTTACCTAATCATTGCGCCGCTGCAATGACCCAACTGCATCGTTAAATATTATTGACCGCAGACCCTGCCAAAc                                                <  5:254787/149‑1 (MQ=255)                                                                                                    acCGCCGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCAAGCCCACTCCCACAGTGACCGAGGTTACTTCAAGTTACCTAATCATTGCGCCGCTGCAATGACCCAACTGCATCGTTAAATATTATTGACCGCAGACCCTg                                                      <  6:272126/142‑1 (MQ=255)                                                                                                    acCGCCGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCAAGCCCACTCCCACAGTGACCGAGGTTACTTCAAGTTACCTAATCATTGCGCCGCTGCAATGACCCAACTGCATCGTTAAATATTATTGACCGCAGACCCTg                                                      >  5:272126/1‑142 (MQ=255)                                                                                                    acCGCCGTGGATGCCACGGGCTTCGCCCGTGTTCGCGCGCAAGCCCACTCCCACAGTGACCGAGGTTACTTCAAGTTACCTAATCATTGCGCCGCTGCAATGACCCAACTGCATCGTTAAATATTATTCACCCCAGACCCTGCCAAAcc                                               >  5:354220/1‑149 (MQ=255)                                                                                                     ccgccgTGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCAAGCCCACTCCCACAGTGACCGAGGTTACTTCAAGTTACCTAATCATTGCGCCGCTGCAATGACCCAACTGCATCGTTAAATATTATTGACCGCAGACCCTGCCAAAccc                                              >  3:329858/1‑149 (MQ=255)                                                                                                       gccgTGGATGGCACGGCCTTCGCCCGTGTTCGCGGGCAAGCCCACTCCCACAGTGACCGAGGTTACTACAAGATACCTAATCATTGCGCCGCTGCAATCACCCACCTGCATCCTGTAATATTTTTGACCGCAGACGCTGCCAATccccc                                            >  8:353789/1‑147 (MQ=37)                                                                                                          gTGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCAAGCCCACTCCCACAGTGACCGAGGTTACTTCAAGTTACCTAATCATTGCGCCGCTGCAATGACCCAACTGCATCGTTAAATATTATTGACCGCAGACCCTGCCAAACCCAcgcc                                         >  4:196848/1‑149 (MQ=255)                                                                                                             gATGGCACGGGCTTCGCCCGTGTTCGCGGGCAAGCCCACTCCCACAGTGACCGAGGTTACTTCAAGTTACCTAATCATTGCGCCGCTCCAATGACCCAACTGCATCGTTAAATATTATTGACCGCAGACCCTGCCAAACCCAcgccgc                                       >  5:295112/1‑148 (MQ=255)                                                                                                                 gCACGGGCTTCGCCCGTGTTCGCGGGCAAGCCCACTCCCACAGTGACCGAGGTTACTTCAAGTTACCTAATCATTGCGCCGCTGCAATGACCCAACTGCATCGTTAAATATTATTGACCGCAGACCCTGCCAAACCCACGCCGCCACAg                                  <  8:83390/149‑1 (MQ=255)                                                                                                                 gCACGGGCTTCGCCCGTGTTCGCGGGCAAGCCCACTCCCACAGTGACCGAGGTTACTTCAAGTTACCTAATCATTGCGCCGCTGCAATGACCCAACTGCATCGTTAAATATTATTGACCGCAGACCCTGCCAAACCCACGCCGCCACAg                                  >  1:257606/1‑149 (MQ=255)                                                                                                                   aCGGGCTTCGCCCGTGTTCGCGGGCAAGCCCACTCCCACAGTGACCGAGGTTACTTCAAGTTACCTAATCATTGCGCCGCTGCAATGACCCAACTGCATCGTTAAATATTATTGACCGCAGACCCTGACAAACCCACGCCGCCACAGGc                                >  4:104978/1‑149 (MQ=255)                                                                                                                                 tgtTCGCGGGCAAGCCCACTCCCACAGTGACCGAGGTTACTTCAAGTTACCTAATCATTGCGCCGCTGCAATGACCCAACTGCATCGTTAAATATTATTGACCGCAGACCCTGCCAAACCCACGCCGCCACAGGCCCGCATCGGTTTCa                  <  6:295112/149‑1 (MQ=255)                                                                                                                                 tgtTCGCGGGCAAGCCCACTCCCACAGTGACCGAGGTTACTTCAAGTTACCTAATCATTGCGCCGCTGCAATGACCCAACTGCATCGTTAAATATTATTGACCGCAGACCCTGCCAAACCCACGCCGCCACAGGCCCGCATCGGTTTCa                  <  5:19807/149‑1 (MQ=255)                                                                                                                                  gtTCGCGGGCAAGCCCACTCCCACAGTGACCGAGGTTACTTCAAGTTACCTAATCATTGCGCCGCTGCAATGACCCAACTGCATCGTTAAATATTATTGACCGCAGACCCTGCCAAACCCACGCCGCCACAGGCCCGCATCGGTTTCAg                 >  4:118069/1‑149 (MQ=255)                                                                                                                                       cgGGCAAGCCCACTCCCACAGTGACCGAGGTTACTTCAAGTTACCTAATCATTGCGCCGCTGCAATGACCCAACTGCATCGTTAAATATTATTGACCGCAGACCCTGCCAAACCCACGCCGCCACAGGCCCGCATCGGTTTCAGcccc             >  4:48820/1‑148 (MQ=255)                                                                                                                                            aaGCCCACTCCCACAGTGACCGAGGTTACTTCAAGTTACCTAATCATTGCGCCGCTGCAATGACCCAACTGCATCGTTAAATATTATTGACCGCAGACCCTGCCAAACCCACGCCGCCACAGGCCCGCATCGGTTTCAGCCCCCAGaa        >  8:45373/1‑148 (MQ=255)                                                                                                                                             aGCCCACTCCCACAGTGACCGAGGTTACTTCAAGTTACCTAATCATTGCGCCGCTGCAATGACCCAACTGCATCGTTAAATATTATTGACCGCAGACCCTGCCAAACCCACGCCGCCACAGGCCCGCATCGGTTTCAGCCCCCAGaaaa      <  4:329858/149‑1 (MQ=255)                                                                                                                                                ccACTCCCACAGTGACCGAGGTTACTTCAAGTTACATAATCAGTGCGCCGCTGCAATGACCCAACTGCATCGTTAAATATTATTGACCGCAGACCCTGCCAAACCCCAGCCGCCACCGCCCAGCATCTGTTTACGCCCCCTGaaacagg   >  6:379233/1‑145 (MQ=255)                                                                                                                                                 cACTCCCACAGTGACCGAGGTTACTTCAAGTTACCTAATCATTGCGCCGCTGCAATGACCCAACTGCATCGTTAAATATTATTGACCGCAGACCCTGCCAAACCCACGCCGCCACAGGCCCGCATCGGttt                    <  6:186841/131‑1 (MQ=255)                                                                                                                                                 cACTCCCACAGTGACCGAGGTTACTTCAAGTTACCTAATCATTGCGCCGCTGCAATGACCCAACTGCATCGTTAAATATTATTGACCGCAGACCCTGCCAAACCCACGCCGCCACAGGCCCGCATCGGTTTCAGCCCCCAGAAAACGGc  <  5:330644/149‑1 (MQ=255)                                                                                                                                                 cACTCCCACAGTGACCGAGGTTACTTCAAGTTACCTAATCATTGCGCCGCTGCAATGACCCAACTGCATCGTTAAATATTATTGACCGCAGACCCTGCCAAACCCACGCCGCCACAGGCCCGCATCGGTTTCAGCCCCCAGAAAACGGc  <  3:196848/149‑1 (MQ=255)                                                                                                                                                    |                                                                                                                                                  TTCAACCAGCCGCGCACCGAGCGGGCCAAGGCGTTTTTGGCGCAGATCCTGCACTGATTGAAAGCCTGTCACTGTGGGGGGTTTACCCGCGAAGAAGACACCGCCGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCAAGCCCACTCCCACAGTGACCGAGGTTACTTCAAGTTACCTAATCATTGCGCCGCTGCAATGACCCAACTGCATCGTTAAATATTATTGACCGCAGACCCTGCCAAACCCACGCCGCCACAGGCCCGCATCGGTTTCAGCCCCCAGAAAACGGC  >  NC_002947/4087295‑4087587

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.