New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5269810	61 (0.980)	4 (0.070)	4/260	NT	7.1%	coding (529/1371 nt)	radA	DNA repair enzyme
	?	NC_002947	= 5269874	45 (0.740)					coding (465/1371 nt)	radA	DNA repair enzyme

ATAGCGCACCAGCAACGCTGTGCTTTCGCGCACCTGGGCCACGCCGCCCGGGGCCGATTGCAACTGCTCGGTGAAAATGGTCTGGATCGAGTCGATCACCATTACCCGCGGCTTCTCGACCCGCGCCGTGGCAATGATCGTCTCGATGCAGGTTTCGGTCATCACCTTGAGTTGGTCCTGGGGTAGGCCCAGCCGCCGCGAGCGCATGGCCACCTGCTGCTGCGACTCCTCCCCCGTGACATACAGGGCCGGCATGCCCACGGCAATGTTGCACAAGGTCTGTAGCAAAATGGTC  >  NC_002947/5269727‑5270021                                                                                                                                                    |                                                                                                                                                    aTAGCGCACCAGCAACGCTGTGCTTTCGCGCACCTGGGCCACGCCGCCCGGGGCCGATTGAAACTGCTCGGTGAAAATGGTCTGGATCGAGTCGATCACCAATACCCGCGGCTTCTCGACCCGCGCCGTGGCAATGATCGTCTCGATg                                                                                                                                                     >  4:347353/1‑148 (MQ=255)      gctccAGGAACGCTGTGCTTTCGCGCACCTTGGCCTCGCCGCCCGGGGCGGATTGCAAGTGCTCGTTGATATTGGTCTGGATCGAGTGGATCACGATTACCCGCGGCTTCTCGACCCGCGCCGTGGCAATGATCTTCTCGATGGAGGtt                                                                                                                                               <  8:79254/146‑1 (MQ=255)         ccAGCAACGCTGTGCTTTCGCGCACCTGGGCCACGCCGCCCGGGGCCGATTGCAACTGCTCGGTGAAAATGGTCTGGATCGAGTCGATCACCATTACCCGCGGCTTCTCGACCCGCGCCGTGGCAATGATCGTCTCGATGCAGGTTTCg                                                                                                                                            <  4:40280/149‑1 (MQ=255)          cAGCAACGCTGTGCTTTCGCGCACCTGGGCCACGCCGCCCGGGGCCGATTGCAACTGCTCGGTGAAAATGGTCTGGATCGAGTCGATCACCATTACCCGCGGCTTCTCGACCCGCGCCGTGGCAATGATCGTCTCGATGCAGGTTTCgg                                                                                                                                           <  4:197974/149‑1 (MQ=255)          cAGCAACGCTGTGCTTTCGCGCACCTGGGCCACGCCGCCCGGGGCCGATTGCAACTGCTCGGTGAAAATGGTCTGGATCGAGTCGATCACCATTACCCGCGGCTTCTCGACCCGCGCCGTGGCAATGATCGTCTCGATGCAGGTTTCgg                                                                                                                                           <  6:73794/149‑1 (MQ=255)                 gCTGTGCTTTCGCGCACCTGGGCCACGCCGCCCGGGGCCGATTGCAACTGCTCGGTGAAAATGGTCTGGATCGAGTCGATCACCATTACCCGCGGCTTCTCGACCCGCGCCGTGGCAATGATCGTCTCGATGCAGGTTTCGGTCATCAc                                                                                                                                    >  7:33274/1‑149 (MQ=255)                   tgtgCTTTCGCGCACCTGGGCCACGCCGCCCGGGGCCGATTGCAACTGCTCGGTGAAAATGGTCTGGATCGAGTCGATCACCATTACCCGCGGCTTCTCGACCCGCGCCGTGGCAATGATCGTCTCGATGCAGGTTTCGGTCATCACCt                                                                                                                                  >  7:153824/1‑149 (MQ=255)                     tgCTTTCGCGCACCTGGGCCACGCCGCCCGGGGCCGATTGCAACTGCTCGGTGAAAATGGTCTGGATCGAGTCGATCACCATTACCCGCGGCTTCTCGACCCGCGCCGTGGCAATGATCGTCTCGATGCAGTTTTCGGTCATCACCtt                                                                                                                                 <  2:390079/148‑1 (MQ=255)                      gCTTTCGCGCACCTGGGCCACGCCGCCCGGGGCCGATTGCAACTGCTCGGTGAAAATGGTCTGGATCGAGTCGATCACCATTACCCGCGGCTTCTCGACCCGCGCCGTGGCAATGATCGTCTCGATGCAGGTTTCGGTCATCACCTTGa                                                                                                                               <  4:19661/149‑1 (MQ=255)                       cTTTCGCGCACCTGGGCCACGCCGCCCGGGGCCGATTGCAACTGCTCGGTGAAAATGGTCTGGATCGAGTCGATCACCATTACCCGCGGCTTCTCGACCCGCGCCGTGGCAATGATCGTCTCGATGCAGGTTTCGGTCATCACCTTGAg                                                                                                                              >  3:338699/1‑149 (MQ=255)                        tttCGCGCACCTGGGCCACGCCGCCCGGGGCCGATTGCAACTGCTCGGTGAAAATGGTCTGGATCGAGTCGATCACCATTACCCGCGGCTTCTCGACCCGCGCCGTGGCAATGATCGTCTCGATGCAGGTTTCGGTCATCACCTTGAGt                                                                                                                             <  3:299845/149‑1 (MQ=255)                           cgctCACCTGGGCCACGCCGCCCGGGGCGGATTGCAACTTCTCGGTTAAAATGGTCTGGATCGAGTCGATCACCATTACCGGCGGCTTCTCGACCCGCGCCGTGGCAATGATCGTCTCGATGCAGGTTTCGGTCATCACCTTGAGTTg                                                                                                                           <  5:47531/148‑1 (MQ=255)                           cgcgCACCTGGGCCACGCCGCCCGGGGCCGATTGCAACTGCTCGGTGAAAATGGTCTGGATCGAGTCGATCACCATTACCCGCGGCTTCTCGACCCGCGCCGTGGCAATGATCGTCTCGATGCAGGTTTCGGTCATCACCTTGAGTTg                                                                                                                           <  8:33274/148‑1 (MQ=255)                               cacaTGGGCCACGCCGCCCGGGGCCGATTGAAACTGCTCGGTGAAAATGTTCTGGATCGAGTCGATCACCATTACCCGCGGCTTCTCGACCCGCGCCGTGGCAATGATCGTCTCGATGCAGGTTTCGGTCCTCACCTTTAGTTGGTCCt                                                                                                                      >  3:10972/1‑149 (MQ=255)                                aCCTGGGCCACGCCGCCCGGGGCCGATTGCAACTGCTCGGTGAAAATGGTCTGGATCGAGTCGATCACCATTACCCGCGGCTTCTCGACCCGCGCCGTGGCAATGATCGTCTCGATGCAGGTTTCGGTCATCACCTTGAGTTGGTCCTg                                                                                                                     <  4:273393/149‑1 (MQ=255)                                 ccTGGGCCACGCCGCCCGGGGCCGATTGCAACTGCTCGGTGAAAATGGTCTGGATCGAGTCGATCACCATTACCCGCGGCTTCTCGACCCGCGCCGTGGCAATGATCGTCTCGATGCAGGTTTCGGTCATCACCTTGAGTTGGTCCTgg                                                                                                                    <  2:231598/149‑1 (MQ=255)                                      gCCACGCCGCCCGGGGCCGATTGCAACTGCTCGGTGAAAATGGTCTGGATCGAGTCGATCACCATTACCCGCGGCTTCTCGACCCGCGCCGTGGCAATGATCGTCTCGATGCAGGTTTCGGTCATCACCTTGAGTTGGTCCTGGGGTAg                                                                                                               <  8:27587/149‑1 (MQ=255)                                       ccACGCCGCCCGGGGCCGATTGCAACTGCTCGGTGAAAATGGTCTGGATCGAGTCGATCACCATTACCCGCGGCTTCTCGACCCGCGCCGTGGCAATGATCGTCTCGATGCAGGTTTCGGTCATCACCTTGAGTTGGTCCTGGGGTAgg                                                                                                              <  7:227845/149‑1 (MQ=255)                                        cACGCCGCCCGGGGCCGATTGCAACTGCTCGGTGAAAATGGTCTGGATCGAGTCGATCACCATTACCCGCGGCTTCTCGACCCGCGCCGTGGCAATGATCGTCTCGATGCAGGTTTCGGTCATCACCTTGAGTTGGTCCTGGGGTAGGc                                                                                                             <  8:153824/149‑1 (MQ=255)                                           gccgccCGGGGCCGATTGCAACTGCTCGGTGAAAATGGTCTGGATCGAGTCGATCACCATTACCCGCGGCTTCTCGACCCGCGCCGTGGCAATGATCGTCTCGATGCAGGTTTCGGTCATCACCTTGAGTTGGTCCTGGGGTAGGCCCa                                                                                                          <  7:47590/149‑1 (MQ=255)                                                   gggCCGATTGCACCTGCTCGGTGAAAATGGGCTGGATCGAGTCGATCACAATTACCCGCGGCTTATCGACCCGCGCCGTGTCAATGATCGTCTCTATGCAGGTTTCGGTCATCACCTTGAGTTGTTCCTTGGGTAGTCCCAGCcgccgc                                                                                                  <  4:10972/149‑1 (MQ=255)                                                    ggCCGATTGCAACTGCTCGGTGAAAATGGTCTGGATCGAGTCGATCACCATTACCCGCGGCTTCTCGACCCGCGCCGTGGCAATGATCGTCTCGATGCAGGTTTCGGTCATCACCTTGAGTTGGTCCTGGGGTAGGCCCAGCCGCcgcg                                                                                                 <  6:170101/149‑1 (MQ=255)                                                     gCCGATTGCAACTGCTCGGTGAAAATGGTCTGGATCGAGTCGATCACCATTACCCGCGGCTTCTCGACCCGCGCCGTGGCAATGATCGTCTCGATGCAGGTTTCGGTCATCACCTTGAGTTGGTCCTGGGGTAGGCCCAGCCGCCGCGa                                                                                                <  5:371487/149‑1 (MQ=255)                                                      ccGATTGCAACTGCTCGGTGAAAATGGTCTGGATCGAGTCGATCACCATTACCCGCGGCTTCTCGACCCGCGCCGTGGCAATGATCGTCTCGATGCAGGTTTCGGTCATCACCTTGAGTTGGTCCTGGGGTAGGCCCAGCCGCCGCGAg                                                                                               >  4:19599/1‑149 (MQ=255)                                                             cAACTGCTCGGTGAAAATGGTCTGGATCGAGTCGATCACCATTACCCGCGGCTTCTCGACCCGCGCCGTGGCAATGATCGTCTCGATGCAGGTTTCGGTCATCACCTTGAGTTGGTCCTGGGGTAGGCCCAGCCGCCGCGAGCGCATgg                                                                                        <  4:338699/149‑1 (MQ=255)                                                             cAACTGCTCGGTGAAAATGGTCTGGATCGAGTCGATCACCATTACCCGCGGCTTCTCGACCCGCGCCGTGGCAATGATCGTCTCGATGCAGGTTTCGGTCATCACCTTGAGTTGGTCCTGGGGTAGGCCCAGCCGCCGCGAGCGCATgg                                                                                        >  6:6663/1‑149 (MQ=255)                                                              aaCTGCTCGGTTAAATTGGGCTGGATCGAGTCGATCACCATTACCCGCGGCTTCTCGACCCGCGCCGTGGGAATGATCGTCTCGATGCAGGTTTCGGTCATCACCTTGAGTTGGTCCTGGGGTAGGCCCAGCCGCCGCGAGCGCATGGc                                                                                       <  3:12969/149‑1 (MQ=255)                                                              aaCTGCTCGGTGAAAATGGTCTGGATCGAGTCGATCACCATTACCCGCGGCTTCTCGACCCGCGCCGTGGCAATGATCGTCTCGATGCAGGTTTCGGtcatc                                                                                                                                      <  7:210054/102‑1 (MQ=255)                                                              aaCTGCTCGGTGAAAATGGTCTGGATCGAGTCGATCACCATTACCCGCGGCTTCTCGACCCGCGCCGTGGCAATGATCGTCTCGATGCAGGTTTCGGtcatc                                                                                                                                      >  8:210054/1‑102 (MQ=255)                                                                    tCGGTGAAAATGGTCTGGATCGAGTCGATCACCATTACCCGCGGCTTCTCGACCCGCGCCGTGGCAATGATCGTCTCGATGCAGGTTTCGGTCATCACCTTCAGTTGGTCCTGGGGTAGGCCCAGCCGCCGCGAGCGCATGGCCACctg                                                                                 >  7:277894/1‑149 (MQ=255)                                                                          aaaaTGGTCTGGATCGAGTCGATCACCATTACCCGCGGCTTCTCGACCCGCGCCGTGGCAATGATCGTCTCGATGcagaccattttcaccgagcagttgcaatcggccccgggcggcgtggcccaggtgcgcgaaagcacagcgttgct                                                                           <  2:197305‑M2/149‑75 (MQ=255)                                                                            aaTGGTCTGGATCGAGTCGATCACCATTACCCGCGGCTTCTCGCCCCGCGCCGTGGCAATGATCGTCTCGATGCAGGTTTCGGTCATCACCTTGAGTTGGTCCTGGGGTAGGCCCAGCCGCCGCGAGCGCATGGCCACCtgctgctgc                                                                          >  7:121451/1‑148 (MQ=255)                                                                             aTGGTCTGGATCGAGTCGATCACCATTACCCGCGGCTTCTCGACCCGCGCCGTGGCAATGATCGTCTCGATGcagaccattttcaccgagcagttgcaatcggccccgggcggcgtggcccaggtgcgcgaaagcacagcgttgctggt                                                                        <  6:113551‑M2/149‑78 (MQ=255)                                                                                gTCTGGCTCGAGGCGATCACCATTACCCGCGGCTTCTCGACCCGCGCCGTGGCAATGATCGTCTCGATGCAGGTTTCGGTCATCACCTTGAGTTGGTCCTGGGGTAGGCCCAGCCGCCGCGAGCGCATGGCCACCTGCTGCTGCGActc                                                                     <  4:267316/149‑1 (MQ=255)                                                                                  cTGGATCGAGTCGATCACCATTACCCGCGGCTTCTCGACCCGCGCCGTGGCAATGATCGTCTCGATGCAGGTTTCGGTCATCACCTTGAGTTGGTCCTGGGGTAGGCCCAGCCGCCGCGAGCGCATGGCCACCtgctgctgc                                                                          <  7:28971/142‑1 (MQ=255)                                                                                  cTGGATCGAGTCGATCACCATTACCCGCGGCTTCTCGACCCGCGCCGTGGCAATGATCGTCTCGAAGCAGGATTCGGTCATCACCTTGAGTTCGTCCTGGGGTAGGCCCAGCCGCCGCGAGCGCATGGCCacctgcacctgc                                                                          >  8:28971/1‑142 (MQ=255)                                                                                  cTGGATCGAGTCGATCACCATTACCCGCGGCTTCTCGACCCGCGACGTGGCAATGATCGTCTCGATGCAGGTTTCGGTCATCACCTTGAGTTGGTCCTGGGGTAGGCCCAGCCGCCGCGAGCGCATGGCCACCTGCTGCTGCGActcct                                                                   >  5:34309/1‑149 (MQ=255)                                                                                     gATCGAGTCGATCACCATTACCCGCGGCTTCTCGACCCGCGCCGTGGCAATGATCGTCTCGATGcagaccattttcaccgagcagttgcaatcggccccgggcggcgtggcccaggtgcgcgaaagcacagcgttgctggtgcgcta                                                                  >  1:197305‑M2/1‑64 (MQ=255)                                                                                     gATCGAGTCGATCACCATTACCCGCGGCTTCTCGACCCGCGCCGTGGCAATGATCGTCTCGATGCAGGTTTCGGTCATCACCTTGAGTTGGTCCTGGGGTAGGCCCAGCCGCCGCGAGCGCATGGCCACCTGCTGCTGCGActcct                                                                   <  2:35141/146‑1 (MQ=255)                                                                                       tCGAGTCGATCACCATTACCCGCGGCTTCTCGACCCGCGCCGTGGCAATGATCGTCTCGATGCAGGTTTCGGTCATCACCTTGAGTTGGTCCTGGGGTAGGCCCAGCCGCCGCGAGCGCATGGCCACCTGCTGCTGCGACTCCTccccc                                                              <  2:8457/149‑1 (MQ=255)                                                                                         gAGTCGATCACCATTACCCGCGGCTTCTCGACCCGCGCCGTGGCAATGATCGTCTCGATGcagaccattttcaccgagcagttgcaatcggccccgggcggcgtggcccaggtgcgcgaaagcacagcgttgctggtgcgctatgccaa                                                            >  5:113551‑M2/1‑60 (MQ=255)                                                                                                                cTTCTCGACCCGCGCCGTGGCAATGATCGTCTCGATGCAGGTTTCGGTCATCACCTTGAGTTGGTCCTGGGGTAGGCCCAGCCGCCGCGAGCGCATGGCCACCTGCTGCTGCGACTCCTCCCCCGTGACATACAGGGCCGGCATGCCCa                                     >  2:334764/1‑149 (MQ=255)                                                                                                                   ctcGACCCGCGCCGTGGCAATGATCGTCTCGATGCAGGTTTCGGTCATCACCTTGAGTTGGTCCTGGGGTAGGCCCAGCCGCCGCGAGCGCATGGCCACCTGCTGCTGCGACTCCTCCCCCGTGACATACAGGGCCGGCATGCCCACg                                   <  3:19599/148‑1 (MQ=255)                                                                                                                      gACCCGCGCCGTGGCAATGATCGTCTCGATGCAGGTTTCGGTCATCACCTTGAGTTGGTCCTGGGGTAGGCCCAGCCGCCGCGAGCGCATGGCCACCTGCTGCTGCGACTCCTCCCCCGTGACATACAGGGCCGGCATGCCCACgg                                  <  1:222616/146‑1 (MQ=255)                                                                                                                      gACCCGCGCCGTGGCAATGATCGTCTCGATGCAGGTTTCGGTCATCACCTTGAGTTGGTCCTGGGGTAGGCCCAGCCGCCGCGAGCGCATGGCCACCTGCTGCTGCGACTCCTCCCCCGTGACATACAGGGCCGGCATGCCCACGGCaa                               >  8:345946/1‑149 (MQ=255)                                                                                                                        cccGCGCCGTGGCAATGATCGTCTCGATGCAGGTTTCGGTCATCACCTTGAGTTGGTCCTGGGGTAGGCCCAGCCGCCGCGAGCGCATGGCCACCTGCTGCTGCGACTCCTCCCCCGTGACATACAGGGCCGGCATGCCCACGGCAATg                             >  1:234391/1‑149 (MQ=255)                                                                                                                         ccGCGCCGTGGCAATGATCGTCTCGATGCAGGTTTCGGTCATCACCTTGAGTTGGTCCTGGGGTAGGCCCAGCCGCCGCGAGCGCATGGCCACCTGCTGCTGCGACTCCTCCCCCGTGACATACAGGGCCGGCATGCCCACGGCAATGt                            <  1:94281/149‑1 (MQ=255)                                                                                                                            cgcCGTGGCAATGATCGTCTCGATGCAGGTTTCGGTCATCACCTTGAGTTGGTCCTGGGGTAGGCCCAGCCGCCGCGAGCGCATGGCCACCTGCTGCTGCGACTCCTCCCCCGTGACATACAGGGCCGGCATGCCCACGGCAATGTTGc                         <  5:6663/149‑1 (MQ=255)                                                                                                                                     aaTGATCGTCTCGATGCAGGTTTCGGTCATCACCTTGAGTTGGTCCTGGGGTAGGCCCAGCCGCCGCGAGCGCATGGCCACCTGCTGCTGCGACTCCTCCCCCGTGACATACAGGGCCGGCATGCCCACGGCAATGTTGCACAAGGTCt                >  6:196543/1‑149 (MQ=255)                                                                                                                                     aaTGATCGTCTCGATGCAGGTTTCGGTCATCACCTTGAGTTGGTCCTGGGGTAGGCCCAGCCGCCGCGAGCGAATGGCCACCTGCTGCTGCGACTCCTCCCCCGTGACATACAGGGCCGGCATGCCCACGGCAATGTTGCACAAGGTCt                >  1:349368/1‑149 (MQ=255)                                                                                                                                       tGATCGTCTCGATGCAGGTTTCGGTCATCACCTTGAGTTGGTCCTGGGGTAGGCCCAGCCGCCGCGAGCGCATGGCCACCTGCTGCTGCGACTCCTCCCCCGTGACATACAGGGCCGGCATGCCCACGGCAATGTTGCACAAGGTCTGt              <  2:349368/149‑1 (MQ=255)                                                                                                                                                   tGCAGGTTTCGGTCATCACCTTGAGTTGGTCCTGGGGTAGGCCCAGCCGCCGCGAGCGCATGGCCACCTGCTGCTGCGACTCCTCCCCCGTGACATACAGGGCCGGCATGCCCACGGCAATGTTGCACAAGGTCTGTAGCAAAATGGTc  >  5:373656/1‑149 (MQ=255)                                                                                                                                                    |                                                                                                                                                    ATAGCGCACCAGCAACGCTGTGCTTTCGCGCACCTGGGCCACGCCGCCCGGGGCCGATTGCAACTGCTCGGTGAAAATGGTCTGGATCGAGTCGATCACCATTACCCGCGGCTTCTCGACCCGCGCCGTGGCAATGATCGTCTCGATGCAGGTTTCGGTCATCACCTTGAGTTGGTCCTGGGGTAGGCCCAGCCGCCGCGAGCGCATGGCCACCTGCTGCTGCGACTCCTCCCCCGTGACATACAGGGCCGGCATGCCCACGGCAATGTTGCACAAGGTCTGTAGCAAAATGGTC  >  NC_002947/5269727‑5270021

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.